GWAS1114661_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1114661_H (intelligence QTL GWAS1114661 (human)) Homo sapiens

Symbol: GWAS1114661_H
Name: intelligence QTL GWAS1114661 (human)
RGD ID: 597018587
Trait: intelligence
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38588,417,096 - 88,417,097RGD_MAPPER_PIPELINEGRCh38
GRCh37587,712,913 - 87,712,914RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1114661_HHumanintelligence  IAGPrs6452788405850206 GWAS_CATALOGPMID:29844566

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6480801TMEM161B-DTTMEM161B divergent transcript58826888288436674Human
11576030LINC02060long intergenic non-protein coding RNA 206058840898288439090Human


Peak: (rs6452788)
Human AssemblyChrPosition (strand)Source
GRCh38588,417,096 - 88,417,097RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597460484GWAS1556558_Hhealth study participation QTL GWAS1556558 (human)3e-09health study participation58841709688417097Human
597443409GWAS1539483_Hdocosahexaenoic acid measurement, fatty acid measurement QTL GWAS1539483 (human)1e-08fatty acid amount (VT:0010046)blood free fatty acids level (CMO:0000117)58841709688417097Human
597018587GWAS1114661_Hintelligence QTL GWAS1114661 (human)0.000002intelligence58841709688417097Human
597392901GWAS1488975_Hrefractive error QTL GWAS1488975 (human)5e-09refractive error58841709688417097Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1114661_H GCST006269 General cognitive ability up to 300,486 European ancestry individuals ? NR 0.000002 5.699 rs6452788 4.786 intelligence (EFO:0004337)
 PMID:29844566
GWAS1725488_H GCST007070 White blood cell count approximately 444,000 European ancestry individuals ? NR 1E-7 7 rs6452788 N/A leukocyte quantity (OBA:VT0000217)
 PMID:30595370
GWAS1488975_H GCST010378 Spherical equivalent 95,827 European ancestry individuals G NR 5E-9 8.302 rs6452788 0.07 PMID:32352494
GWAS1539483_H GCST90092817 Ratio of docosahexaenoic acid to total fatty acid levels 115,006 European ancestry individuals G 0.760042 1E-8 8 rs6452788 0.0265588 docosahexaenoic acid measurement (EFO:0007761)
fatty acid measurement (EFO:0005110)
 PMID:35213538
GWAS1556558_H GCST008549 Mental health study participation (provided email address) 224,321 British ancestry cases, 147,096 British ancestry controls A 0.24 3E-9 8.523 rs6452788 0.0075061 health study participation (EFO:0010130)
 PMID:31263887
Database
Acc Id
Source(s)
GWAS Catalog GCST006269 GWAS Catalog

Note Type Note Reference