GWAS1500053_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1500053_H (bitter alcoholic beverage consumption measurement QTL GWAS1500053 (human)) Homo sapiens

Symbol: GWAS1500053_H
Name: bitter alcoholic beverage consumption measurement QTL GWAS1500053 (human)
RGD ID: 597403979
Trait: bitter alcoholic beverage consumption measurement
Measurement Type: drink intake measurement   (CMO:0000771)    
LOD Score: Not Available
P Value: 8.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38588,366,503 - 88,366,504RGD_MAPPER_PIPELINEGRCh38
GRCh37587,662,320 - 87,662,321RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1500053_HHumandrink intake measurement  IAGPrs13157159405850206 GWAS_CATALOGPMID:31046077

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1500053_HHumanbitter alcoholic beverage consumption measurement  IAGPrs13157159405850206 GWAS_CATALOGPMID:31046077

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6480801TMEM161B-DTTMEM161B divergent transcript58826888288436674Human


Peak: (rs13157159)
Human AssemblyChrPosition (strand)Source
GRCh38588,366,503 - 88,366,504RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597403979GWAS1500053_Hbitter alcoholic beverage consumption measurement QTL GWAS1500053 (human)8e-11bitter alcoholic beverage consumption measurementdrink intake measurement (CMO:0000771)58836650388366504Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1500053_H GCST008522 Bitter alcoholic beverage consumption 336,448 European ancestry individuals T 0.2078 8E-11 10.097 rs13157159 0.0082 bitter alcoholic beverage consumption measurement (EFO:0010092)
 PMID:31046077
Database
Acc Id
Source(s)
GWAS Catalog GCST008522 GWAS Catalog

Note Type Note Reference