Thrb (thyroid hormone receptor beta) - Rat Genome Database

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Gene: Thrb (thyroid hormone receptor beta) Rattus rattus
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Symbol: Thrb
Name: thyroid hormone receptor beta
RGD ID: 625878121
Description: ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); cellular response to thyroid hormone stimulus (ortholog); ASSOCIATED WITH Arachnodactyly (ortholog); Arnold-Chiari Malformation (ortholog); atrial fibrillation (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly
Position:
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11287,040,043 - 87,133,169 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Thrb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11287,040,043 - 87,133,169 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
THRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38324,117,153 - 24,495,708 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl324,117,153 - 24,495,756 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37324,158,644 - 24,537,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36324,134,709 - 24,511,317 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34324,139,235 - 24,511,317NCBI
Celera324,094,249 - 24,472,076 (-)NCBICelera
Cytogenetic Map3p24.2NCBI
HuRef324,104,526 - 24,481,917 (-)NCBIHuRef
CHM1_1324,110,176 - 24,487,912 (-)NCBICHM1_1
T2T-CHM13v2.0324,121,636 - 24,500,130 (-)NCBIT2T-CHM13v2.0
Thrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,429,599 - 4,810,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,429,815 - 4,809,435 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381417,659,225 - 18,040,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1417,660,261 - 18,038,090 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371418,493,474 - 18,870,602 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361416,774,842 - 16,827,040 (+)NCBIMGSCv36mm8
Celera1413,338,110 - 13,729,284 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Thrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81510,115,954 - 10,465,231 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1510,115,954 - 10,313,680 (-)EnsemblGRCr8
mRatBN7.2157,685,180 - 8,031,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl157,685,180 - 7,882,916 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx159,830,939 - 10,169,014 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01510,743,731 - 11,081,799 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0159,044,158 - 9,382,240 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd159,095,214 - 9,440,709 (-)NCBI
Lyon_Normotensive159,015,140 - 9,360,629 (-)NCBI
Lyon_Hypertensive159,103,994 - 9,443,284 (-)NCBI
F344_StmMcwi159,714,915 - 10,060,405 (-)NCBI
Rnor_6.0158,890,578 - 9,239,815 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl158,890,578 - 9,086,282 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01512,951,550 - 13,299,586 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4159,282,845 - 9,345,506 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera157,735,185 - 8,077,355 (-)NCBICelera
RGSC_v3.1159,279,949 - 9,685,583 (-)NCBI
Cytogenetic Map15p16NCBI
Thrb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543015,992,146 - 16,323,238 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495543015,992,146 - 16,322,696 (-)NCBIChiLan1.0ChiLan1.0
THRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2224,072,698 - 24,449,852 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1324,077,464 - 24,454,587 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0324,024,025 - 24,401,024 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1324,345,760 - 24,722,803 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl324,346,824 - 24,564,960 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
THRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12319,278,650 - 19,648,547 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2319,277,493 - 19,660,283 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2319,274,402 - 19,646,202 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02319,582,486 - 19,954,456 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2319,582,797 - 19,954,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12319,398,045 - 19,769,727 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02319,507,580 - 19,879,481 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02319,616,877 - 19,988,327 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Thrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1235,596,634 - 35,965,788 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024405118182,627,645 - 182,847,821 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647315,770,146 - 15,986,561 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647315,766,214 - 15,986,389 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1310,900,724 - 11,359,544 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11310,900,716 - 11,360,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21312,399,964 - 12,857,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11569,505,462 - 69,873,106 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604141,924,134 - 42,291,602 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11568,797,410 - 69,161,256 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1568,802,078 - 68,902,292 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Thrb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247881,950,888 - 2,348,895 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247881,950,890 - 2,349,343 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl932,773,158 - 33,032,682 (-)Ensembl


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_032917248   ⟹   XP_032773139
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v11287,040,045 - 87,133,169 (+)NCBI
RefSeq Acc Id: XM_032917249   ⟹   XP_032773140
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v11287,040,043 - 87,133,169 (+)NCBI
RefSeq Acc Id: XM_032917250   ⟹   XP_032773141
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v11287,095,673 - 87,133,169 (+)NCBI
Protein Sequences
Protein RefSeqs XP_032773139 (Get FASTA)   NCBI Sequence Viewer  
  XP_032773140 (Get FASTA)   NCBI Sequence Viewer  
  XP_032773141 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_032773140   ⟸   XM_032917249
- Peptide Label: isoform X2
RefSeq Acc Id: XP_032773139   ⟸   XM_032917248
- Peptide Label: isoform X1
RefSeq Acc Id: XP_032773141   ⟸   XM_032917250
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Thrb ENTREZGENE