Thrb (thyroid hormone receptor beta) - Rat Genome Database

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Gene: Thrb (thyroid hormone receptor beta) Chinchilla lanigera
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Symbol: Thrb
Name: thyroid hormone receptor beta
RGD ID: 9041775
Description: ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cellular response to thyroid hormone stimulus (ortholog); embryonic organ development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thyroid hormone receptor, beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543015,992,146 - 16,323,238 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543015,992,146 - 16,322,696 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Thrb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543015,992,146 - 16,323,238 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543015,992,146 - 16,322,696 (-)NCBIChiLan1.0ChiLan1.0
THRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38324,117,153 - 24,495,708 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl324,117,153 - 24,495,756 (-)EnsemblGRCh38hg38GRCh38
GRCh37324,158,644 - 24,537,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36324,134,709 - 24,511,317 (-)NCBINCBI36hg18NCBI36
Build 34324,139,235 - 24,511,317NCBI
Celera324,094,249 - 24,472,076 (-)NCBI
Cytogenetic Map3p24.2NCBI
HuRef324,104,526 - 24,481,917 (-)NCBIHuRef
CHM1_1324,110,176 - 24,487,912 (-)NCBICHM1_1
T2T-CHM13v2.0324,121,636 - 24,500,130 (-)NCBI
Thrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,429,599 - 4,810,538 (-)NCBIGRCm39mm39
GRCm39 Ensembl144,431,611 - 4,809,435 (-)Ensembl
GRCm381417,659,225 - 18,040,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1417,660,261 - 18,038,090 (+)EnsemblGRCm38mm10GRCm38
MGSCv371418,493,474 - 18,870,602 (+)NCBIGRCm37mm9NCBIm37
MGSCv361416,774,842 - 16,827,040 (+)NCBImm8
Celera1413,338,110 - 13,729,284 (+)NCBICelera
Cytogenetic Map14A1NCBI
Thrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2157,685,180 - 8,031,920 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl157,685,180 - 7,882,916 (-)Ensembl
Rnor_6.0158,890,578 - 9,239,815 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl158,890,578 - 9,086,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01512,951,550 - 13,299,586 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4159,282,845 - 9,345,506 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1159,279,949 - 9,685,583 (-)NCBI
Celera157,735,185 - 8,077,355 (-)NCBICelera
Cytogenetic Map15p16NCBI
THRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1324,345,760 - 24,722,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl324,346,824 - 24,564,960 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0324,024,025 - 24,401,024 (-)NCBIMhudiblu_PPA_v0panPan3
THRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12319,278,650 - 19,648,547 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2319,277,493 - 19,660,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2319,274,402 - 19,646,202 (+)NCBI
ROS_Cfam_1.02319,582,486 - 19,954,456 (+)NCBI
ROS_Cfam_1.0 Ensembl2319,582,797 - 19,954,439 (+)Ensembl
UMICH_Zoey_3.12319,398,045 - 19,769,727 (+)NCBI
UNSW_CanFamBas_1.02319,507,580 - 19,879,481 (+)NCBI
UU_Cfam_GSD_1.02319,616,877 - 19,988,327 (+)NCBI
Thrb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118182,627,645 - 182,847,821 (-)NCBI
SpeTri2.0NW_00493647315,766,214 - 15,986,389 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1310,900,718 - 11,359,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11310,900,716 - 11,360,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21312,399,964 - 12,857,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11568,797,410 - 69,161,256 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1568,802,078 - 68,902,292 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604141,924,134 - 42,291,602 (-)NCBIVero_WHO_p1.0
Thrb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247881,950,890 - 2,349,343 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247881,950,888 - 2,348,895 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006003   ⟹   ENSCLAP00000005902
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543015,992,146 - 16,091,151 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006004   ⟹   ENSCLAP00000005903
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543015,996,651 - 16,323,238 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006005   ⟹   ENSCLAP00000005904
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543015,996,651 - 16,285,065 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006006   ⟹   ENSCLAP00000005905
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543015,996,651 - 16,060,985 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006007   ⟹   ENSCLAP00000005906
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543015,996,651 - 16,037,916 (-)Ensembl
RefSeq Acc Id: XM_005387482   ⟹   XP_005387539
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543015,992,146 - 16,322,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515651   ⟹   XP_013371105
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543015,992,146 - 16,285,065 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387539 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371105 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005387539   ⟸   XM_005387482
- Sequence:
RefSeq Acc Id: XP_013371105   ⟸   XM_013515651
- Sequence:
RefSeq Acc Id: ENSCLAP00000005902   ⟸   ENSCLAT00000006003
RefSeq Acc Id: ENSCLAP00000005906   ⟸   ENSCLAT00000006007
RefSeq Acc Id: ENSCLAP00000005905   ⟸   ENSCLAT00000006006
RefSeq Acc Id: ENSCLAP00000005904   ⟸   ENSCLAT00000006005
RefSeq Acc Id: ENSCLAP00000005903   ⟸   ENSCLAT00000006004


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004182 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000005902 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000005903 UniProtKB/TrEMBL
  ENSCLAP00000005904 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000005905 UniProtKB/TrEMBL
  ENSCLAP00000005906 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006003 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000006004 UniProtKB/TrEMBL
  ENSCLAT00000006005 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000006006 UniProtKB/TrEMBL
  ENSCLAT00000006007 UniProtKB/TrEMBL
NCBI Gene Thrb ENTREZGENE
UniProt A0A8C2UV13_CHILA UniProtKB/TrEMBL
  A0A8C2UVH9_CHILA UniProtKB/TrEMBL
  A0A8C2V0N5_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Thrb  thyroid hormone receptor beta    thyroid hormone receptor, beta  Symbol and/or name change 5135510 APPROVED