BSG (basigin (Ok blood group)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: BSG (basigin (Ok blood group)) Pan paniscus
Analyze
Symbol: BSG
Name: basigin (Ok blood group)
RGD ID: 329345444
Description: ENCODES a protein that exhibits signaling receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); endothelial tube morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); breast ductal carcinoma (ortholog); FOUND IN endosome (ortholog); photoreceptor outer segment (ortholog); sarcolemma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basigin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2204,897,258 - 4,908,073 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,136,030 - 4,146,843 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl19539,815 - 551,456 (+)Ensemblpanpan1.1panPan2


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BSG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2204,897,258 - 4,908,073 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,136,030 - 4,146,843 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl19539,815 - 551,456 (+)Ensemblpanpan1.1panPan2
BSG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819571,283 - 583,493 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19571,277 - 583,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3719571,283 - 583,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619522,325 - 534,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419522,324 - 534,492NCBI
Celera19234,501 - 246,669 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19342,018 - 354,031 (+)NCBIHuRef
CHM1_119570,866 - 583,082 (+)NCBICHM1_1
T2T-CHM13v2.019525,174 - 537,384 (+)NCBIT2T-CHM13v2.0
Bsg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,540,192 - 79,547,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,540,325 - 79,547,803 (+)EnsemblGRCm39 Ensembl
GRCm381079,704,358 - 79,711,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,704,491 - 79,711,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,167,103 - 79,174,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,107,629 - 79,115,022 (+)NCBIMGSCv36mm8
Celera1080,718,673 - 80,726,294 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Bsg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,643,788 - 10,651,005 (-)NCBIGRCr8
mRatBN7.279,993,170 - 10,000,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,993,170 - 10,000,387 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,874,130 - 12,881,349 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,752,211 - 14,759,430 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,611,541 - 12,618,758 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,875,536 - 12,882,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,875,537 - 12,882,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0713,044,572 - 13,051,789 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,507,914 - 11,515,132 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,507,913 - 11,515,056 (-)NCBI
Celera78,166,570 - 8,173,787 (-)NCBICelera
Cytogenetic Map7q11NCBI
Bsg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554957,148,806 - 7,156,296 (-)NCBIChiLan1.0ChiLan1.0
BSG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,942,703 - 57,951,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,943,276 - 57,951,061 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,745,480 - 57,753,845 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,686,165 - 58,694,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,686,156 - 58,698,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,739,806 - 57,748,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,219,731 - 58,228,095 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,422,924 - 58,431,329 (-)NCBIUU_Cfam_GSD_1.0
Bsg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,644,988 - 217,653,120 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588181,576 - 189,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588181,688 - 189,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1277,735,586 - 77,743,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BSG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16309,579 - 320,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6309,506 - 321,785 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,757,164 - 8,768,688 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bsg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,913,099 - 7,920,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,913,297 - 7,920,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039759   ⟹   ENSPPAP00000017059
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19539,815 - 550,580 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039763   ⟹   ENSPPAP00000017063
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19545,988 - 550,580 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039767   ⟹   ENSPPAP00000017067
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19547,354 - 551,456 (+)Ensembl
RefSeq Acc Id: XM_055104185   ⟹   XP_054960160
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2204,897,258 - 4,908,073 (+)NCBI
NHGRI_mPanPan1194,136,030 - 4,146,843 (+)NCBI
RefSeq Acc Id: XM_055104186   ⟹   XP_054960161
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2204,897,345 - 4,908,073 (+)NCBI
NHGRI_mPanPan1194,136,117 - 4,146,843 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054960160 (Get FASTA)   NCBI Sequence Viewer  
  XP_054960161 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017059.1
  ENSPPAP00000017063.1
  ENSPPAP00000017067.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000017063   ⟸   ENSPPAT00000039763
RefSeq Acc Id: ENSPPAP00000017067   ⟸   ENSPPAT00000039767
RefSeq Acc Id: ENSPPAP00000017059   ⟸   ENSPPAT00000039759
RefSeq Acc Id: XP_054960160   ⟸   XM_055104185
RefSeq Acc Id: XP_054960161   ⟸   XM_055104186
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031607 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039759.1 UniProtKB/TrEMBL
  ENSPPAT00000039763.1 UniProtKB/TrEMBL
  ENSPPAT00000039767.1 UniProtKB/TrEMBL
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene BSG ENTREZGENE
PANTHER BASIGIN UniProtKB/TrEMBL
  BASIGIN RELATED UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
PRINTS BASIGIN UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A0A2R9AI86_PANPA UniProtKB/TrEMBL
  A0A2R9AJ29_PANPA UniProtKB/TrEMBL
  A0A2R9AQB3_PANPA UniProtKB/TrEMBL