Chrng (cholinergic receptor nicotinic gamma subunit) - Rat Genome Database

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Gene: Chrng (cholinergic receptor nicotinic gamma subunit) Rattus norvegicus
Analyze
Symbol: Chrng
Name: cholinergic receptor nicotinic gamma subunit
RGD ID: 2354
Description: Enables acetylcholine-gated monoatomic cation-selective channel activity. Involved in monoatomic cation transport and skeletal muscle contraction. Part of acetylcholine-gated channel complex. Human ortholog(s) of this gene implicated in contractures, pterygia, and spondylocarpotarsal fusion syndrome. Orthologous to human CHRNG (cholinergic receptor nicotinic gamma subunit); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; INTERACTS WITH acetylcholine; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acetylcholine receptor subunit gamma; AChR gamma subunit; ACHRG; cholinergic receptor, nicotinic gamma; cholinergic receptor, nicotinic, gamma; cholinergic receptor, nicotinic, gamma (muscle); cholinergic receptor, nicotinic, gamma polypeptide
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,325,984 - 95,332,092 (+)NCBIGRCr8
mRatBN7.2987,878,085 - 87,884,193 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,878,085 - 87,914,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx996,302,189 - 96,308,180 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,438,448 - 101,444,435 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,806,343 - 99,812,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,302,218 - 94,308,591 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0994,023,731 - 94,032,190 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,012,089 - 86,018,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1986,195,507 - 86,201,618 (+)NCBI
Celera985,291,469 - 85,297,460 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Original Reference(s)
ChrngRatcongenital myasthenic syndrome  ISOCHRNG (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
ChrngRatcontractures, pterygia, and spondylocarpotarsal fusion syndrome  ISOCHRNG (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16826520 more ...
ChrngRatcontractures, pterygia, and spondylocarpotarsal fusion syndrome 1B  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive multiple pterygium syndromeClinVarPMID:15704180 more ...
ChrngRatgenetic disease  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16826520 more ...
ChrngRatJoubert syndrome 22  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Joubert syndrome 22ClinVarPMID:28492532
ChrngRatMultiple Pterygium Syndrome, Lethal Type  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Lethal multiple pterygium syndromeClinVarPMID:16199547 more ...
ChrngRatneuropathy  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Peripheral neuropathyClinVarPMID:16826520 more ...
ChrngRatperipheral nervous system disease  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Peripheral neuropathyClinVarPMID:16826520 more ...
ChrngRatPerlman syndrome  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Perlman syndromeClinVarPMID:28492532
ChrngRatrheumatoid arthritis  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: Rheumatoid arthritisClinVarPMID:23261301 more ...
ChrngRatscoliosis  ISOCHRNG (Homo sapiens)8554872ClinVar Annotator: match by term: ScoliosisClinVarPMID:15704180 more ...
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Original Reference(s)
ChrngRatarthrogryposis multiplex congenita  ISOCHRNG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16826520 and PMID:16826531
ChrngRatbone development disease  ISOCHRNG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16826531
ChrngRatcongenital myasthenic syndrome  ISOCHRNG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16826520
ChrngRatcontractures, pterygia, and spondylocarpotarsal fusion syndrome  ISOCHRNG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16826520 and PMID:16826531

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Original Reference(s)
ChrngRat1,2-dichloroethane decreases expressionISOChrng (Mus musculus)6480464ethylene dichloride results in decreased expression of CHRNG mRNACTDPMID:28189721 and PMID:28960355
ChrngRat17beta-estradiol increases expressionISOCHRNG (Homo sapiens)6480464Estradiol results in increased expression of CHRNG mRNACTDPMID:31614463
ChrngRatacetylcholine multiple interactionsEXP 6480464Acetylcholine binds to and results in increased activity of [CHRNA1 protein binds to CHRNA1 protein binds to CHRNB1 protein binds to CHRNG protein binds to CHRND protein]CTDPMID:22461452
ChrngRatacetylcholine multiple interactionsISOCHRNG (Homo sapiens)6480464Acetylcholine binds to and results in increased activity of [CHRNA1 protein binds to CHRNA1 protein binds to CHRNB1 protein binds to CHRNG protein binds to CHRND protein]CTDPMID:22461452
ChrngRatacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of CHRNG mRNACTDPMID:28959563
ChrngRatacrylamide increases expressionISOChrng (Mus musculus)6480464Acrylamide results in increased expression of CHRNG mRNACTDPMID:30807115
ChrngRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of CHRNG mRNACTDPMID:16483693
ChrngRataristolochic acid A increases expressionISOCHRNG (Homo sapiens)6480464aristolochic acid I results in increased expression of CHRNG mRNACTDPMID:33212167
ChrngRatbenzo[a]pyrene decreases expressionISOCHRNG (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of CHRNG mRNACTDPMID:22316170
ChrngRatbenzo[a]pyrene decreases methylationISOCHRNG (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of CHRNG promoterCTDPMID:27901495
ChrngRatbis(2-ethylhexyl) phthalate decreases expressionISOChrng (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of CHRNG mRNACTDPMID:35716406
ChrngRatbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of CHRNG mRNACTDPMID:25181051
ChrngRatC60 fullerene decreases expressionEXP 6480464fullerene C60 results in decreased expression of CHRNG mRNACTDPMID:19167457
ChrngRatcarmustine decreases expressionISOCHRNG (Homo sapiens)6480464Carmustine results in decreased expression of CHRNG mRNACTDPMID:15980968
ChrngRatCGP 52608 multiple interactionsISOCHRNG (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to CHRNG gene]CTDPMID:28238834
ChrngRatchlorpyrifos decreases expressionEXP 6480464Chlorpyrifos results in decreased expression of CHRNG mRNACTDPMID:18812211
ChrngRatdiazinon decreases expressionEXP 6480464Diazinon results in decreased expression of CHRNG mRNACTDPMID:17452286
ChrngRatepibatidine multiple interactionsEXP 6480464epibatidine binds to [NACHRALPHA3 protein co-treated with CHRNG protein]CTDPMID:10728888
ChrngRatflavonoids decreases expressionEXP 6480464Flavonoids results in decreased expression of CHRNG mRNACTDPMID:18035473
ChrngRatLicochalcone B decreases expressionISOCHRNG (Homo sapiens)6480464licochalcone B results in decreased expression of CHRNG mRNACTDPMID:33647349

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Biological Process
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Original Reference(s)
ChrngRatacetylcholine receptor signaling pathway involved_inIBAMGI:87891 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatchemical synaptic transmission involved_inIBAFB:FBgn0000036 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatexcitatory postsynaptic potential involved_inIEAGO:00228481600115GO_REF:0000108GOCGO_REF:0000108
ChrngRatmembrane depolarization involved_inIBAMGI:87891 and PANTHER:PTN0014504311600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatmonoatomic cation transport  IDA 8549758 RGD 
ChrngRatmonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-04071600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRatmonoatomic ion transmembrane transport involved_inIEAInterPro:IPR0062011600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatmonoatomic ion transmembrane transport involved_inIBAFB:FBgn0000036 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatmonoatomic ion transport involved_inIEAInterPro:IPR002394 more ...1600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRatregulation of membrane potential acts_upstream_of_or_withinISOChrng (Mus musculus)1624291MGI:87885 more ...RGDPMID:2383398 and PMID:8798466
ChrngRatregulation of postsynaptic membrane potential involved_inIEAGO:00228481600115GO_REF:0000108GOCGO_REF:0000108
ChrngRatskeletal muscle contraction  IDA 8549758 RGD 
ChrngRatsynaptic transmission, cholinergic involved_inIEAGO:00154641600115GO_REF:0000108GOCGO_REF:0000108
ChrngRattranslation involved_inIEAUniProtKB-KW:KW-06481600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRattranslational initiation involved_inIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRattranslational initiation involved_inIEAInterPro:IPR0010401600115GO_REF:0000002InterProGO_REF:0000002
ChrngRattranslational initiation involved_inIEAInterPro:IPR001040 and InterPro:IPR0197701600115GO_REF:0000002InterProGO_REF:0000002
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Cellular Component
1 to 17 of 17 rows

  
Object Symbol
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Original Reference(s)
ChrngRatacetylcholine-gated channel complex  IDA 8549758 RGD 
ChrngRatacetylcholine-gated channel complex part_ofISOChrng (Mus musculus)1624291 PMID:8798466RGDPMID:8798466
ChrngRatacetylcholine-gated channel complex part_ofIBAFB:FBgn0000036 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatcytoplasm located_inIEAInterPro:IPR0197701600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatmembrane located_inIEAInterPro:IPR002394 more ...1600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRatneuron projection is_active_inIBAFB:FBgn0086778 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
ChrngRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRatplasma membrane located_inISOChrng (Mus musculus)1624291 PMID:12388596RGDPMID:12388596
ChrngRatplasma membrane is_active_inIBAFB:FBgn0000036 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatpostsynaptic membrane located_inIEAUniProtKB-SubCell:SL-02191600115GO_REF:0000044UniProtGO_REF:0000044
ChrngRatpostsynaptic membrane located_inISOChrng (Mus musculus)1624291 PMID:15883046RGDPMID:15883046
ChrngRatpostsynaptic membrane located_inIEAInterPro:IPR0023941600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatpostsynaptic membrane located_inIEAUniProtKB-KW:KW-06281600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRatsynapse is_active_inIBAFB:FBgn0000038 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatsynapse located_inIEAUniProtKB-KW:KW-07701600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
1 to 19 of 19 rows

  
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Original Reference(s)
ChrngRatacetylcholine receptor activity enablesIBAPANTHER:PTN001450431 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatacetylcholine-gated monoatomic cation-selective channel activity  IDA 68734 RGD 
ChrngRatacetylcholine-gated monoatomic cation-selective channel activity enablesIBAMGI:87891 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
ChrngRatacetylcholine-gated monoatomic cation-selective channel activity enablesISOChrng (Mus musculus)1624291MGI:87885 more ...RGDPMID:2383398 and PMID:8798466
ChrngRatacetylcholine-gated monoatomic cation-selective channel activity enablesIEAInterPro:IPR0023941600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatacetylcholine-gated monoatomic cation-selective channel activity  IDA 8549758 RGD 
ChrngRatextracellular ligand-gated monoatomic ion channel activity enablesIEAInterPro:IPR006202 and InterPro:IPR0367341600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatligand-gated monoatomic ion channel activity  IDA 68734 RGD 
ChrngRatmonoatomic ion channel activity enablesIEAInterPro:IPR002394 and InterPro:IPR0062011600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatprotein binding enablesISOCHRNG (Homo sapiens)1624291UniProtKB:P60409 more ...RGDPMID:25416956 more ...
ChrngRatprotein binding enablesISOChrng (Mus musculus)1624291PR:P02716 more ...RGDPMID:8798466
ChrngRatprotein binding enablesISOCHRNG (Homo sapiens) and UniProtKB:P07510-21624291UniProtKB:A8MQ03 more ...RGDPMID:25910212 and PMID:32296183
ChrngRatRNA binding enablesIEAInterPro:IPR001040 and InterPro:IPR0197701600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatRNA binding enablesIEAInterPro:IPR0010401600115GO_REF:0000002InterProGO_REF:0000002
ChrngRatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRattranslation initiation factor activity enablesIEAInterPro:IPR0010401600115GO_REF:0000002InterProGO_REF:0000002
ChrngRattranslation initiation factor activity enablesIEAInterPro:IPR001040 and InterPro:IPR0197701600115GO_REF:0000002InterProGO_REF:0000002
ChrngRattranslation initiation factor activity enablesIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
ChrngRattransmembrane signaling receptor activity enablesIEAInterPro:IPR0062011600115GO_REF:0000002InterProGO_REF:0000002
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RGD Manual Annotations


  

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Reference Title
Reference Citation
1. Multiple inhibitory actions of lidocaine on Torpedo nicotinic acetylcholine receptors transplanted to Xenopus oocytes. Alberola-Die A, etal., J Neurochem. 2011 Jun;117(6):1009-19. doi: 10.1111/j.1471-4159.2011.07271.x. Epub 2011 May 10.
2. Mammalian nicotinic acetylcholine receptors: from structure to function. Albuquerque EX, etal., Physiol Rev. 2009 Jan;89(1):73-120. doi: 10.1152/physrev.00015.2008.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. A novel mode-of-action mediated by the fetal muscle nicotinic acetylcholine receptor resulting in developmental toxicity in rats. Rasoulpour RJ, etal., Toxicol Sci. 2012 Jun;127(2):522-34. doi: 10.1093/toxsci/kfs118. Epub 2012 Mar 29.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14. Refined structure of the nicotinic acetylcholine receptor at 4A resolution. Unwin N, J Mol Biol. 2005 Mar 4;346(4):967-89. doi: 10.1016/j.jmb.2004.12.031. Epub 2005 Jan 25.
15. Primary structure and functional expression of the alpha-, beta-, gamma-, delta- and epsilon-subunits of the acetylcholine receptor from rat muscle. Witzemann V, etal., Eur J Biochem 1990 Dec 12;194(2):437-48.
16. The neuromuscular junction: selective remodeling of synaptic regulators at the nerve/muscle interface. Witzemann V, etal., Mech Dev. 2013 Jun-Aug;130(6-8):402-11. doi: 10.1016/j.mod.2012.09.004. Epub 2012 Sep 29.
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PMID:2383398   PMID:3666131   PMID:8798466   PMID:12388596   PMID:15883046  



Chrng
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,325,984 - 95,332,092 (+)NCBIGRCr8
mRatBN7.2987,878,085 - 87,884,193 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,878,085 - 87,914,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx996,302,189 - 96,308,180 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,438,448 - 101,444,435 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,806,343 - 99,812,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,302,218 - 94,308,591 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0994,023,731 - 94,032,190 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,012,089 - 86,018,199 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1986,195,507 - 86,201,618 (+)NCBI
Celera985,291,469 - 85,297,460 (+)NCBICelera
Cytogenetic Map9q35NCBI
CHRNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,539,692 - 232,548,115 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,539,692 - 232,548,115 (+)EnsemblGRCh38hg38GRCh38
GRCh372233,404,402 - 233,412,825 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,112,681 - 233,119,282 (+)NCBINCBI36Build 36hg18NCBI36
Build 342233,229,962 - 233,235,931NCBI
Celera2227,168,752 - 227,175,352 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,255,337 - 225,261,938 (+)NCBIHuRef
CHM1_12233,410,527 - 233,417,126 (+)NCBICHM1_1
T2T-CHM13v2.02233,026,474 - 233,034,899 (+)NCBIT2T-CHM13v2.0
Chrng
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,133,533 - 87,139,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,132,379 - 87,140,416 (+)EnsemblGRCm39 Ensembl
GRCm38187,205,811 - 87,211,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,204,657 - 87,212,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,102,386 - 89,108,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36189,036,981 - 89,042,806 (+)NCBIMGSCv36mm8
Celera190,178,869 - 90,184,965 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map144.07NCBI
Chrng
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,425,603 - 3,432,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554533,425,603 - 3,432,695 (-)NCBIChiLan1.0ChiLan1.0
CHRNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,143,072 - 135,155,792 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,158,037 - 135,166,019 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B119,770,636 - 119,779,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B238,689,935 - 238,696,526 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B238,689,935 - 238,696,526 (+)Ensemblpanpan1.1panPan2
CHRNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,178,149 - 44,183,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,178,181 - 44,183,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2544,672,778 - 44,678,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02544,435,581 - 44,441,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,435,581 - 44,440,890 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,361,428 - 44,366,851 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,206,722 - 44,212,147 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,361,853 - 44,367,490 (+)NCBIUU_Cfam_GSD_1.0
Chrng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,383,042 - 186,388,768 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,550,987 - 4,556,576 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,550,987 - 4,556,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,052,031 - 133,058,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115133,051,668 - 133,059,935 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215146,951,213 - 146,959,626 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHRNG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110118,558,688 - 118,566,449 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10118,559,230 - 118,565,610 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604080,935,848 - 80,941,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrng
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,297,059 - 5,301,699 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248435,297,025 - 5,301,714 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Chrng
22 total Variants

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:35
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000026529
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat

1 to 10 of 22 rows
D9Got109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2987,881,222 - 87,881,453 (+)MAPPERmRatBN7.2
Rnor_6.0994,305,356 - 94,305,586NCBIRnor6.0
Rnor_5.0994,028,948 - 94,029,178UniSTSRnor5.0
RGSC_v3.4986,015,225 - 86,015,457RGDRGSC3.4
RGSC_v3.4986,015,227 - 86,015,457UniSTSRGSC3.4
RGSC_v3.1986,198,644 - 86,198,876RGD
Celera985,294,488 - 85,294,718UniSTS
RH 2.0 Map9849.4RGD
Cytogenetic Map9q35UniSTS
D9Wox27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2987,881,304 - 87,881,532 (+)MAPPERmRatBN7.2
Rnor_6.0994,305,438 - 94,305,665NCBIRnor6.0
Rnor_5.0994,029,030 - 94,029,257UniSTSRnor5.0
RGSC_v3.4986,015,309 - 86,015,536UniSTSRGSC3.4
Celera985,294,570 - 85,294,797UniSTS
Cytogenetic Map9q35UniSTS
UniSTS:238129  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8995,331,151 - 95,331,904 (+)Marker Load Pipeline
mRatBN7.2987,883,252 - 87,884,005 (+)MAPPERmRatBN7.2
Rnor_6.0994,307,651 - 94,308,403NCBIRnor6.0
Rnor_5.0994,031,243 - 94,031,995UniSTSRnor5.0
RGSC_v3.4986,017,259 - 86,018,011UniSTSRGSC3.4
Celera985,296,520 - 85,297,272UniSTS
Cytogenetic Map9q35UniSTS
Chrng  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera985,292,457 - 85,294,126UniSTS
Cytogenetic Map9q35UniSTS







RefSeq Acc Id: NM_019145   ⟹   NP_062018
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,325,984 - 95,332,092 (+)NCBI
mRatBN7.2987,878,085 - 87,884,193 (+)NCBI
Rnor_6.0994,302,218 - 94,308,591 (+)NCBI
Rnor_5.0994,023,731 - 94,032,190 (+)NCBI
RGSC_v3.4986,012,089 - 86,018,199 (+)RGD
Celera985,291,469 - 85,297,460 (+)RGD
Sequence:
Protein RefSeqs NP_062018 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA29662 (Get FASTA)   NCBI Sequence Viewer  
  CAA52828 (Get FASTA)   NCBI Sequence Viewer  
  EDL75621 (Get FASTA)   NCBI Sequence Viewer  
  EDL75622 (Get FASTA)   NCBI Sequence Viewer  
  EDL75623 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085634
GenBank Protein P18916 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062018   ⟸   NM_019145
- Peptide Label: precursor
- UniProtKB: P18916 (UniProtKB/Swiss-Prot),   A0A8I6A2R4 (UniProtKB/TrEMBL),   A6JWL3 (UniProtKB/TrEMBL)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K933-F1-model_v2 AlphaFold A0A0G2K933 1-256 view protein structure
AF-P18916-F1-model_v2 AlphaFold P18916 1-519 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-26849 BioCyc
Ensembl Genes ENSRNOG00000019634 Ensembl
  ENSRNOG00000077483 ENTREZGENE
Ensembl Transcript ENSRNOT00000106438 ENTREZGENE
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot
  2.70.170.10 UniProtKB/Swiss-Prot
InterPro Neur_chan_lig-bd UniProtKB/Swiss-Prot
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot
  Neur_channel UniProtKB/Swiss-Prot
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot
  Neuro_actylchol_rec UniProtKB/Swiss-Prot
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot
  Nicotinic_acetylcholine_rcpt UniProtKB/Swiss-Prot
KEGG Report rno:25753 UniProtKB/Swiss-Prot
NCBI Gene 25753 ENTREZGENE
PANTHER PTHR18945 UniProtKB/Swiss-Prot
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot
  Neur_chan_memb UniProtKB/Swiss-Prot
PhenoGen Chrng PhenoGen
PRINTS NICOTINICR UniProtKB/Swiss-Prot
  NRIONCHANNEL UniProtKB/Swiss-Prot
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019634 RatGTEx
  ENSRNOG00000077483 RatGTEx
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot
  SSF90112 UniProtKB/Swiss-Prot
TIGR TC226750
UniProt A0A096MK14_RAT UniProtKB/TrEMBL
  A0A0G2K933_RAT UniProtKB/TrEMBL
  A0A0U1RRY1_RAT UniProtKB/TrEMBL
  A0A8I6A2R4 ENTREZGENE, UniProtKB/TrEMBL
  A6JWL3 ENTREZGENE, UniProtKB/TrEMBL
  A6JWL4_RAT UniProtKB/TrEMBL
  A6JWL5_RAT UniProtKB/TrEMBL
  ACHG_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Chrng  cholinergic receptor nicotinic gamma subunit  Chrng  cholinergic receptor, nicotinic gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-09 Chrng  cholinergic receptor, nicotinic gamma  Chrng  cholinergic receptor, nicotinic, gamma (muscle)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Chrng  cholinergic receptor, nicotinic, gamma (muscle)  Chrng  cholinergic receptor, nicotinic, gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Chrng  cholinergic receptor, nicotinic, gamma  Chrng  cholinergic receptor, nicotinic, gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Chrng  cholinergic receptor, nicotinic, gamma polypeptide      Symbol and Name status set to approved 70586 APPROVED