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Gene: Fam83g (family with sequence similarity 83, member G) Rattus norvegicus

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Symbol:

Fam83g

Name:

family with sequence similarity 83, member G

RGD ID:

2322345

Description:

Predicted to enable protein kinase binding activity. Predicted to be involved in BMP signaling pathway. Predicted to be active in cytosol and nucleus. Orthologous to human FAM83G (family with sequence similarity 83 member G); INTERACTS WITH (+)-schisandrin B; 3-chloropropane-1,2-diol; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC100360307; LOC100360307

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	46,862,983 - 46,887,499 (+)	NCBI		GRCr8
mRatBN7.2	10	46,363,029 - 46,388,030 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	46,363,051 - 46,388,019 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	47,960,735 - 47,984,083 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	47,961,056 - 47,983,724 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	47,753,880 - 47,777,098 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	47,842,945 - 47,865,224 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	45,611,073 - 45,634,421 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	autistic disorder		ISO	RGD:1606850	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311
Fam83g	Rat	common variable immunodeficiency 2		ISO	RGD:1606850	8554872	ClinVar Annotator: match by term: Immunodeficiency, common variable, 2	ClinVar	PMID:28492532
Fam83g	Rat	Joubert syndrome 1		ISO	RGD:1606850	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532
Fam83g	Rat	Meckel Syndrome 9		ISO	RGD:1606850	8554872	ClinVar Annotator: match by term: Meckel syndrome, type 9	ClinVar	PMID:21493627
Fam83g	Rat	Potocki-Lupski syndrome		ISO	RGD:1606850	8554872	ClinVar Annotator: match by term: Potocki-Lupski syndrome	ClinVar	PMID:28837307

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	palmoplantar keratosis		ISO	RGD:12095288	9068941	Hyperkeratosis, palmoplantar, FAM83G-related	OMIA	PMID:10701186\|PMID:12828257\|PMID:24832243\|PMID:26747202\|PMID:29963719\|PMID:34796560\|PMID:37582787

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of FAM83G mRNA]	CTD	PMID:31150632
Fam83g	Rat	(-)-epigallocatechin 3-gallate	increases expression	ISO	RGD:1606850	6480464	epigallocatechin gallate results in increased expression of FAM83G protein	CTD	PMID:31195006
Fam83g	Rat	17beta-estradiol	increases expression	ISO	RGD:1606850	6480464	Estradiol results in increased expression of FAM83G mRNA	CTD	PMID:23019147\|PMID:31614463
Fam83g	Rat	3-chloropropane-1,2-diol	increases expression	EXP		6480464	alpha-Chlorohydrin results in increased expression of FAM83G mRNA	CTD	PMID:28522335
Fam83g	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1618348	6480464	bisphenol S affects the methylation of FAM83G exon	CTD	PMID:33297965
Fam83g	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1606850	6480464	Aflatoxin B1 results in decreased methylation of FAM83G polyA tail	CTD	PMID:30157460
Fam83g	Rat	aflatoxin B1	increases methylation	ISO	RGD:1606850	6480464	Aflatoxin B1 results in increased methylation of FAM83G intron; Aflatoxin B1 results in increased methylation more ...	CTD	PMID:30157460
Fam83g	Rat	aristolochic acid A	increases expression	ISO	RGD:1606850	6480464	aristolochic acid I results in increased expression of FAM83G mRNA	CTD	PMID:33212167
Fam83g	Rat	arsane	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	arsenic atom	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1618348	6480464	Benzo(a)pyrene results in increased methylation of FAM83G exon	CTD	PMID:27901495
Fam83g	Rat	benzo[e]pyrene	decreases methylation	ISO	RGD:1606850	6480464	benzo(e)pyrene results in decreased methylation of FAM83G polyA tail	CTD	PMID:30157460
Fam83g	Rat	bisphenol A	affects expression	ISO	RGD:1606850	6480464	bisphenol A affects the expression of FAM83G mRNA	CTD	PMID:30903817
Fam83g	Rat	bisphenol A	increases expression	ISO	RGD:1618348	6480464	bisphenol A results in increased expression of FAM83G mRNA	CTD	PMID:37894381
Fam83g	Rat	cadmium dichloride	increases expression	ISO	RGD:1606850	6480464	Cadmium Chloride results in increased expression of FAM83G mRNA	CTD	PMID:38568856
Fam83g	Rat	caffeine	increases phosphorylation	ISO	RGD:1606850	6480464	Caffeine results in increased phosphorylation of FAM83G protein	CTD	PMID:35688186
Fam83g	Rat	chlordecone	decreases expression	ISO	RGD:1618348	6480464	Chlordecone results in decreased expression of FAM83G mRNA	CTD	PMID:33711761
Fam83g	Rat	cisplatin	decreases expression	ISO	RGD:1606850	6480464	Cisplatin results in decreased expression of FAM83G mRNA	CTD	PMID:27392435
Fam83g	Rat	copper(II) chloride	increases expression	ISO	RGD:1606850	6480464	cupric chloride results in increased expression of FAM83G mRNA	CTD	PMID:38568856
Fam83g	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1606850	6480464	di-n-butylphosphoric acid affects the expression of FAM83G mRNA	CTD	PMID:37042841
Fam83g	Rat	dicrotophos	increases expression	ISO	RGD:1606850	6480464	dicrotophos results in increased expression of FAM83G mRNA	CTD	PMID:28302478
Fam83g	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of FAM83G mRNA	CTD	PMID:29391264
Fam83g	Rat	FR900359	decreases phosphorylation	ISO	RGD:1606850	6480464	FR900359 results in decreased phosphorylation of FAM83G protein	CTD	PMID:37730182
Fam83g	Rat	furan	increases expression	ISO	RGD:1618348	6480464	furan results in increased expression of FAM83G mRNA	CTD	PMID:24183702
Fam83g	Rat	genistein	decreases expression	ISO	RGD:1618348	6480464	Genistein results in decreased expression of FAM83G mRNA	CTD	PMID:32186404
Fam83g	Rat	GSK-J4	increases expression	ISO	RGD:1606850	6480464	GSK-J4 results in increased expression of FAM83G mRNA	CTD	PMID:29301935
Fam83g	Rat	manganese atom	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	manganese(0)	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	manganese(II) chloride	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	methapyrilene	decreases methylation	ISO	RGD:1606850	6480464	Methapyrilene results in decreased methylation of FAM83G polyA tail	CTD	PMID:30157460
Fam83g	Rat	N-methyl-4-phenylpyridinium	increases expression	ISO	RGD:1606850	6480464	1-Methyl-4-phenylpyridinium results in increased expression of FAM83G mRNA	CTD	PMID:24810058
Fam83g	Rat	ozone	multiple interactions	ISO	RGD:1618348	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased more ...	CTD	PMID:34911549
Fam83g	Rat	paracetamol	increases expression	ISO	RGD:1606850	6480464	Acetaminophen results in increased expression of FAM83G mRNA	CTD	PMID:22230336
Fam83g	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of FAM83G mRNA	CTD	PMID:30723492
Fam83g	Rat	paraquat	increases expression	EXP		6480464	Paraquat results in increased expression of FAM83G mRNA	CTD	PMID:32680482
Fam83g	Rat	pentachlorophenol	increases expression	ISO	RGD:1618348	6480464	Pentachlorophenol results in increased expression of FAM83G mRNA	CTD	PMID:23892564
Fam83g	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	RGD:1618348	6480464	perfluorohexanesulfonic acid results in decreased expression of FAM83G mRNA	CTD	PMID:37995155
Fam83g	Rat	potassium dichromate	increases expression	ISO	RGD:1618348	6480464	Potassium Dichromate results in increased expression of FAM83G mRNA	CTD	PMID:23608068
Fam83g	Rat	progesterone	decreases expression	ISO	RGD:1618348	6480464	Progesterone results in decreased expression of FAM83G mRNA	CTD	PMID:22238285
Fam83g	Rat	sodium arsenite	increases expression	ISO	RGD:1606850	6480464	sodium arsenite results in increased expression of FAM83G mRNA	CTD	PMID:38568856
Fam83g	Rat	sodium arsenite	multiple interactions	ISO	RGD:1606850	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Fam83g	Rat	sunitinib	increases expression	ISO	RGD:1606850	6480464	Sunitinib results in increased expression of FAM83G mRNA	CTD	PMID:31533062
Fam83g	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of FAM83G mRNA	CTD	PMID:31150632
Fam83g	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of FAM83G mRNA]	CTD	PMID:31150632
Fam83g	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of FAM83G mRNA	CTD	PMID:34492290
Fam83g	Rat	thiram	increases expression	ISO	RGD:1606850	6480464	Thiram results in increased expression of FAM83G mRNA	CTD	PMID:38568856
Fam83g	Rat	titanium dioxide	decreases methylation	ISO	RGD:1618348	6480464	titanium dioxide results in decreased methylation of FAM83G gene	CTD	PMID:35295148
Fam83g	Rat	triphenyl phosphate	affects expression	ISO	RGD:1606850	6480464	triphenyl phosphate affects the expression of FAM83G mRNA	CTD	PMID:37042841
Fam83g	Rat	triptonide	increases expression	ISO	RGD:1618348	6480464	triptonide results in increased expression of FAM83G mRNA	CTD	PMID:33045310
Fam83g	Rat	valproic acid	increases methylation	ISO	RGD:1606850	6480464	Valproic Acid results in increased methylation of FAM83G gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	BMP signaling pathway	involved_in	ISO	RGD:1606850	1624291	PMID:24554596	RGD	PMID:24554596
Fam83g	Rat	BMP signaling pathway	involved_in	IBA	PANTHER:PTN000415270\|UniProtKB:A6ND36	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam83g	Rat	BMP signaling pathway	involved_in	IEA	UniProtKB:A6ND36\|ensembl:ENSP00000373647	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	cytosol	located_in	ISO	RGD:1606850	1624291	PMID:24554596	RGD	PMID:24554596
Fam83g	Rat	cytosol	located_in	IEA	UniProtKB:A6ND36\|ensembl:ENSP00000373647	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fam83g	Rat	cytosol	is_active_in	IBA	PANTHER:PTN000415270\|UniProtKB:A6ND36	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam83g	Rat	cytosol	located_in	ISO	RGD:1606850\|UniProtKB:A6ND36-1	1624291		RGD	GO_REF:0000052
Fam83g	Rat	nucleus	located_in	IEA	UniProtKB:A6ND36\|ensembl:ENSP00000373647	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fam83g	Rat	nucleus	is_active_in	IBA	PANTHER:PTN000415270\|UniProtKB:A6ND36	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam83g	Rat	nucleus	located_in	ISO	RGD:1606850	1624291	PMID:24554596	RGD	PMID:24554596

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam83g	Rat	protein binding	enables	ISO	RGD:1606850	1624291	UniProtKB:P48729\|UniProtKB:Q15797 PMID:23455922, PMID:24554596, PMID:29789297, PMID:32707033, PMID:33961781, PMID:35271311	RGD	PMID:23455922\|PMID:24554596\|PMID:29789297\|PMID:32707033\|PMID:33961781\|PMID:35271311
Fam83g	Rat	protein kinase binding	enables	IBA	PANTHER:PTN008563846\|UniProtKB:Q2M2I3\|UniProtKB:Q5T0W9\|UniProtKB:Q6ZRV2\|UniProtKB:Q86UY5\|UniProtKB:Q9BQN1\|UniProtKB:Q9H4H8	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:24554596

Fam83g
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	46,862,983 - 46,887,499 (+)	NCBI		GRCr8
mRatBN7.2	10	46,363,029 - 46,388,030 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	46,363,051 - 46,388,019 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	47,960,735 - 47,984,083 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	47,961,056 - 47,983,724 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	47,753,880 - 47,777,098 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	47,842,945 - 47,865,224 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	45,611,073 - 45,634,421 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

FAM83G
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	18,968,789 - 19,006,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	18,968,789 - 19,004,764 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	18,872,102 - 18,908,077 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	18,815,106 - 18,848,785 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	20,788,727 - 20,822,409 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	18,440,295 - 18,473,977 (-)	NCBI		HuRef
CHM1_1	17	18,883,155 - 18,916,846 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	18,915,280 - 18,952,622 (-)	NCBI		T2T-CHM13v2.0

Fam83g
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	61,574,908 - 61,600,776 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	61,574,917 - 61,600,777 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	61,684,058 - 61,709,950 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	61,684,091 - 61,709,951 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	61,497,912 - 61,523,452 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	61,500,659 - 61,524,350 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	62,113,529 - 62,137,220 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B2	NCBI
cM Map	11	37.96	NCBI

Fam83g
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	595,490 - 623,566 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	594,921 - 623,661 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM83G
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	54,039,865 - 54,075,872 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	58,662,089 - 58,698,044 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	32,237,065 - 32,273,015 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	37,169,737 - 37,204,872 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	37,169,509 - 37,204,872 (+)	Ensembl	panpan1.1		panPan2

FAM83G
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,054,805 - 41,085,156 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,055,311 - 41,084,739 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	41,195,906 - 41,226,265 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,162,218 - 41,192,723 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	41,162,225 - 41,192,722 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	41,130,171 - 41,160,525 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,077,227 - 41,107,591 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	41,269,380 - 41,299,741 (+)	NCBI		UU_Cfam_GSD_1.0

Fam83g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	59,933,849 - 59,964,279 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936881	622,966 - 653,421 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936881	623,048 - 651,065 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM83G
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	60,296,820 - 60,322,650 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	60,296,749 - 60,322,653 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	62,944,510 - 62,958,873 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM83G
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	17,671,458 - 17,703,538 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	17,668,751 - 17,702,726 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	3,171,460 - 3,205,884 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam83g
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	5,398,579 - 5,428,309 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	5,396,223 - 5,428,272 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fam83g
51 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	112
Count of miRNA genes:	98
Interacting mature miRNAs:	104
Transcripts:	ENSRNOT00000027312
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35392267	51793994	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat

BI289660

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	46,387,767 - 46,387,982 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	47,985,487 - 47,985,701	NCBI	Rnor6.0
Rnor_5.0	10	47,778,629 - 47,778,843	UniSTS	Rnor5.0
RGSC_v3.4	10	47,867,185 - 47,867,399	UniSTS	RGSC3.4
Celera	10	45,635,825 - 45,636,039	UniSTS
RH 3.4 Map	10	530.17	UniSTS
Cytogenetic Map	10	q23	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	38	103	56	55	24	25	24	6	171	86	83	45	60	31


RefSeq Transcripts	NM_001430302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002724502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002727718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027312 ⟹ ENSRNOP00000027312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	46,363,051 - 46,388,019 (+)	Ensembl
Rnor_6.0 Ensembl	10	47,961,056 - 47,983,724 (+)	Ensembl

RefSeq Acc Id:

XM_039087606 ⟹ XP_038943534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	46,862,983 - 46,887,499 (+)	NCBI
mRatBN7.2	10	46,363,029 - 46,388,030 (+)	NCBI


Protein RefSeqs	NP_001417231	(Get FASTA)	NCBI Sequence Viewer
	XP_038943534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027312
	ENSRNOP00000027312.3

Ensembl Acc Id:

ENSRNOP00000027312 ⟸ ENSRNOT00000027312

RefSeq Acc Id:

XP_038943534 ⟸ XM_039087606

Protein Domains

Scaffolding anchor of CK1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZN30-F1-model_v2	AlphaFold	D3ZN30	1-814	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-24790	BioCyc
Ensembl Genes	ENSRNOG00000027924	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027312	ENTREZGENE
	ENSRNOT00000027312.5	UniProtKB/TrEMBL
Gene3D-CATH	Endonuclease Chain A	UniProtKB/TrEMBL
InterPro	DUF1669	UniProtKB/TrEMBL
	FAM83	UniProtKB/TrEMBL
NCBI Gene	100360307	ENTREZGENE
PANTHER	PROTEIN FAM83A-RELATED	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DUF1669	UniProtKB/TrEMBL
PhenoGen	Fam83g	PhenoGen
RatGTEx	ENSRNOG00000027924	RatGTEx
Superfamily-SCOP	Phospholipase D/nuclease	UniProtKB/TrEMBL
UniProt	D3ZN30	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-08-06	Fam83g	family with sequence similarity 83, member G	LOC100360307	hypothetical protein LOC100360307	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100360307	hypothetical protein LOC100360307			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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