Fam83g (family with sequence similarity 83, member G) - Rat Genome Database

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Gene: Fam83g (family with sequence similarity 83, member G) Mus musculus
Analyze
Symbol: Fam83g
Name: family with sequence similarity 83, member G
RGD ID: 1618348
MGI Page MGI
Description: Predicted to enable protein kinase binding activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Orthologous to human FAM83G (family with sequence similarity 83 member G).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310040C09Rik; AI506990; hypothetical protein LOC69640; RP23-278F12.4; wl; wly
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,574,908 - 61,600,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,574,917 - 61,600,777 (+)EnsemblGRCm39 Ensembl
GRCm381161,684,058 - 61,709,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,684,091 - 61,709,951 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,497,912 - 61,523,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,500,659 - 61,524,350 (+)NCBIMGSCv36mm8
MGSCv361162,113,529 - 62,137,220 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750  
PMID:21873635   PMID:23656696   PMID:26073538   PMID:29963719   PMID:34144502  


Genomics

Comparative Map Data
Fam83g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,574,908 - 61,600,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,574,917 - 61,600,777 (+)EnsemblGRCm39 Ensembl
GRCm381161,684,058 - 61,709,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,684,091 - 61,709,951 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,497,912 - 61,523,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,500,659 - 61,524,350 (+)NCBIMGSCv36mm8
MGSCv361162,113,529 - 62,137,220 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
FAM83G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,968,789 - 19,006,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,968,789 - 19,004,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371718,872,102 - 18,908,077 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,815,106 - 18,848,785 (-)NCBINCBI36Build 36hg18NCBI36
Celera1720,788,727 - 20,822,409 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,440,295 - 18,473,977 (-)NCBIHuRef
CHM1_11718,883,155 - 18,916,846 (-)NCBICHM1_1
T2T-CHM13v2.01718,915,280 - 18,952,622 (-)NCBIT2T-CHM13v2.0
Fam83g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,862,983 - 46,887,499 (+)NCBIGRCr8
mRatBN7.21046,363,029 - 46,388,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,363,051 - 46,388,019 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01047,960,735 - 47,984,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,961,056 - 47,983,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,753,880 - 47,777,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,842,945 - 47,865,224 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1045,611,073 - 45,634,421 (+)NCBICelera
Cytogenetic Map10q22NCBI
Fam83g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467595,490 - 623,566 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955467594,921 - 623,661 (+)NCBIChiLan1.0ChiLan1.0
FAM83G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,039,865 - 54,075,872 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11758,662,089 - 58,698,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,237,065 - 32,273,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11737,169,737 - 37,204,872 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,169,509 - 37,204,872 (+)Ensemblpanpan1.1panPan2
FAM83G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,054,805 - 41,085,156 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,055,311 - 41,084,739 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,195,906 - 41,226,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,162,218 - 41,192,723 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,162,225 - 41,192,722 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,130,171 - 41,160,525 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,077,227 - 41,107,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,269,380 - 41,299,741 (+)NCBIUU_Cfam_GSD_1.0
Fam83g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,933,849 - 59,964,279 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881622,966 - 653,421 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881623,048 - 651,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM83G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,296,820 - 60,322,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,296,749 - 60,322,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,944,510 - 62,958,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM83G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,671,458 - 17,703,538 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,668,751 - 17,702,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,171,460 - 3,205,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam83g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,398,579 - 5,428,309 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,396,223 - 5,428,272 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam83g
579 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1222
Count of miRNA genes:596
Interacting mature miRNAs:761
Transcripts:ENSMUST00000070453, ENSMUST00000093019
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse

Markers in Region
AI506990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,709,656 - 61,709,748UniSTSGRCm38
MGSCv371161,523,158 - 61,523,250UniSTSGRCm37
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11825.48UniSTS
UniSTS:236602  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,707,835 - 61,708,136UniSTSGRCm38
MGSCv371161,521,337 - 61,521,638UniSTSGRCm37
Cytogenetic Map11B2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000070453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,574,917 - 61,577,684 (+)Ensembl
GRCm38.p6 Ensembl1161,684,091 - 61,686,858 (+)Ensembl
RefSeq Acc Id: ENSMUST00000093019   ⟹   ENSMUSP00000090697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,575,245 - 61,600,777 (+)Ensembl
GRCm38.p6 Ensembl1161,684,419 - 61,709,951 (+)Ensembl
RefSeq Acc Id: NM_178618   ⟹   NP_848733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,575,236 - 61,600,776 (+)NCBI
GRCm381161,684,410 - 61,709,950 (+)NCBI
MGSCv371161,497,912 - 61,523,452 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534119   ⟹   XP_006534182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,574,908 - 61,600,774 (+)NCBI
GRCm381161,684,058 - 61,709,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534120   ⟹   XP_006534183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,574,908 - 61,600,774 (+)NCBI
GRCm381161,684,058 - 61,709,950 (+)NCBI
Sequence:
RefSeq Acc Id: NP_848733   ⟸   NM_178618
- UniProtKB: Q5U437 (UniProtKB/Swiss-Prot),   Q8C1B0 (UniProtKB/Swiss-Prot),   Q5SWY7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534182   ⟸   XM_006534119
- Peptide Label: isoform X1
- UniProtKB: Q5U437 (UniProtKB/Swiss-Prot),   Q8C1B0 (UniProtKB/Swiss-Prot),   Q5SWY7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534183   ⟸   XM_006534120
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000090697   ⟸   ENSMUST00000093019
Protein Domains
FAM83 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SWY7-F1-model_v2 AlphaFold Q5SWY7 1-812 view protein structure

Promoters
RGD ID:6820862
Promoter ID:MM_KWN:7788
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000070453,   OTTMUST00000012995
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361161,497,536 - 61,498,036 (+)MPROMDB
RGD ID:8674944
Promoter ID:EPDNEW_M15502
Type:multiple initiation site
Name:Fam83g_2
Description:Mus musculus family with sequence similarity 83, member G , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15503  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,684,087 - 61,684,147EPDNEW
RGD ID:8674946
Promoter ID:EPDNEW_M15503
Type:initiation region
Name:Fam83g_1
Description:Mus musculus family with sequence similarity 83, member G , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15502  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,684,464 - 61,684,524EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916890 AgrOrtholog
Ensembl Genes ENSMUSG00000042377 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000093019 ENTREZGENE
  ENSMUST00000093019.6 UniProtKB/Swiss-Prot
Gene3D-CATH Endonuclease Chain A UniProtKB/Swiss-Prot
InterPro FAM83_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1916890 ENTREZGENE
NCBI Gene 69640 ENTREZGENE
PANTHER PROTEIN FAM83G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM83 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam83g PhenoGen
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/Swiss-Prot
UniProt FA83G_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q5U437 ENTREZGENE
  Q8BK45_MOUSE UniProtKB/TrEMBL
  Q8C1B0 ENTREZGENE
  Q8C1M8_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5U437 UniProtKB/Swiss-Prot
  Q8C1B0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Fam83g  family with sequence similarity 83, member G  2310040C09Rik  RIKEN cDNA 2310040C09 gene  Symbol and/or name change 5135510 APPROVED