FAM83G (family with sequence similarity 83 member G) - Rat Genome Database

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Gene: FAM83G (family with sequence similarity 83 member G) Chlorocebus sabaeus
Analyze
Symbol: FAM83G
Name: family with sequence similarity 83 member G
RGD ID: 18398979
Description: ENCODES a protein that exhibits keratin filament binding (inferred); protein kinase binding (inferred); INVOLVED IN BMP signaling pathway (inferred); epidermal growth factor receptor signaling pathway (inferred); intermediate filament cytoskeleton organization (inferred); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM83G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,671,458 - 17,703,538 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,668,751 - 17,702,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,171,460 - 3,205,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM83G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,671,458 - 17,703,538 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,668,751 - 17,702,726 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,171,460 - 3,205,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAM83G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,968,789 - 19,006,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,968,789 - 19,004,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371718,872,102 - 18,908,077 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,815,106 - 18,848,785 (-)NCBINCBI36Build 36hg18NCBI36
Celera1720,788,727 - 20,822,409 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,440,295 - 18,473,977 (-)NCBIHuRef
CHM1_11718,883,155 - 18,916,846 (-)NCBICHM1_1
T2T-CHM13v2.01718,915,280 - 18,952,622 (-)NCBIT2T-CHM13v2.0
Fam83g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,574,908 - 61,600,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,574,917 - 61,600,777 (+)EnsemblGRCm39 Ensembl
GRCm381161,684,058 - 61,709,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,684,091 - 61,709,951 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,497,912 - 61,523,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,500,659 - 61,524,350 (+)NCBIMGSCv36mm8
MGSCv361162,113,529 - 62,137,220 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Fam83g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,862,983 - 46,887,499 (+)NCBIGRCr8
mRatBN7.21046,363,029 - 46,388,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,363,051 - 46,388,019 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01047,960,735 - 47,984,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,961,056 - 47,983,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,753,880 - 47,777,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,842,945 - 47,865,224 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1045,611,073 - 45,634,421 (+)NCBICelera
Cytogenetic Map10q22NCBI
Fam83g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467595,490 - 623,566 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955467594,921 - 623,661 (+)NCBIChiLan1.0ChiLan1.0
FAM83G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,039,865 - 54,075,872 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11758,662,089 - 58,698,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,237,065 - 32,273,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11737,169,737 - 37,204,872 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1737,169,509 - 37,204,872 (+)Ensemblpanpan1.1panPan2
FAM83G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,054,805 - 41,085,156 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,055,311 - 41,084,739 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,195,906 - 41,226,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,162,218 - 41,192,723 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,162,225 - 41,192,722 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,130,171 - 41,160,525 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,077,227 - 41,107,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,269,380 - 41,299,741 (+)NCBIUU_Cfam_GSD_1.0
Fam83g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,933,849 - 59,964,279 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881622,966 - 653,421 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881623,048 - 651,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM83G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,296,820 - 60,322,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,296,749 - 60,322,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,944,510 - 62,958,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Fam83g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,398,579 - 5,428,309 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,396,223 - 5,428,272 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1
Low 35 20 34
Below cutoff 26

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000005974   ⟹   ENSCSAP00000004186
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1617,668,751 - 17,702,726 (-)Ensembl
RefSeq Acc Id: XM_008010589   ⟹   XP_008008780
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11617,671,458 - 17,703,538 (-)NCBI
Vero_WHO_p1.0NW_0236660593,171,460 - 3,205,884 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008008780 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004186.1
Reference Protein Sequences
RefSeq Acc Id: XP_008008780   ⟸   XM_008010589
- UniProtKB: A0A0D9R6E7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004186   ⟸   ENSCSAT00000005974


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005974.1 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/TrEMBL
InterPro FAM83_N UniProtKB/TrEMBL
NCBI Gene FAM83G ENTREZGENE
PANTHER PROTEIN FAM83B-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam FAM83 UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/TrEMBL
UniProt A0A0D9R6E7 ENTREZGENE, UniProtKB/TrEMBL