Zbtb16 (zinc finger and BTB domain containing 16) - Rat Genome Database

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Gene: Zbtb16 (zinc finger and BTB domain containing 16) Heterocephalus glaber
Analyze
Symbol: Zbtb16
Name: zinc finger and BTB domain containing 16
RGD ID: 18917976
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN embryonic digit morphogenesis (ortholog); embryonic hindlimb morphogenesis (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); acute promyelocytic leukemia with PLZF/RARA (ortholog); FOUND IN nuclear body (inferred); nuclear speck (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zinc finger and BTB domain-containing protein 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247849,545,529 - 9,726,960 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247849,546,509 - 9,726,960 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl553,033,419 - 53,213,802 (-)Ensembl
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247849,545,529 - 9,726,960 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247849,546,509 - 9,726,960 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl553,033,419 - 53,213,802 (-)Ensembl
ZBTB16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811114,059,711 - 114,256,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11114,058,335 - 114,256,765 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh3711113,930,433 - 114,127,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,435,641 - 113,626,608 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411113,435,658 - 113,626,568NCBI
Celera11111,083,317 - 111,274,300 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,859,046 - 110,049,950 (+)NCBIHuRef
CHM1_111113,814,520 - 114,005,500 (+)NCBICHM1_1
T2T-CHM13v2.011114,070,066 - 114,267,135 (+)NCBIT2T-CHM13v2.0
Zbtb16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,563,097 - 48,747,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,563,141 - 48,748,664 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38948,651,797 - 48,836,225 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,654,297 - 48,836,222 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37948,462,402 - 48,644,050 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36948,406,264 - 48,587,864 (-)NCBIMGSCv36mm8
Celera945,948,793 - 46,132,024 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.47NCBI
Zbtb16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8857,885,886 - 58,073,507 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl857,891,081 - 58,073,507 (-)EnsemblGRCr8
mRatBN7.2848,989,376 - 49,177,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl848,994,566 - 49,177,011 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx854,500,313 - 54,682,843 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0852,779,162 - 52,961,700 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,643,426 - 50,825,960 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd858,714,828 - 58,897,345 (-)NCBI
Lyon_Normotensive860,912,006 - 61,094,527 (-)NCBI
Lyon_Hypertensive859,342,723 - 59,525,241 (-)NCBI
F344_StmMcwi850,748,161 - 50,930,096 (-)NCBI
Rnor_6.0852,980,226 - 53,146,765 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl852,985,313 - 53,146,953 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0851,573,252 - 51,740,759 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4851,931,530 - 52,094,813 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera848,553,034 - 48,734,595 (-)NCBICelera
RGSC_v3.1852,110,091 - 52,110,396 (-)NCBI
Cytogenetic Map8q23NCBI
Zbtb16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,668,332 - 15,845,372 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541215,668,332 - 15,845,384 (+)NCBIChiLan1.0ChiLan1.0
ZBTB16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29114,803,098 - 114,998,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111115,897,024 - 116,092,398 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011108,938,414 - 109,133,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111112,780,446 - 112,977,164 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11112,780,380 - 112,977,164 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
ZBTB16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,082,594 - 19,284,360 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,087,154 - 19,267,628 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha519,007,960 - 19,195,854 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0519,104,312 - 19,292,747 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,106,853 - 19,291,539 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,168,970 - 19,356,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,070,647 - 19,258,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,117,162 - 19,305,163 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1497,413,103 - 97,593,606 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440494796,135,014 - 96,315,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612395,177 - 570,595 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936612389,877 - 570,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,639,701 - 41,836,742 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1941,639,536 - 41,839,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,454,490 - 46,459,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11110,380,942 - 110,577,642 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604320,384,628 - 20,582,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11105,446,067 - 105,648,771 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,449,994 - 105,643,344 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Zbtb16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1843,145,301 - 43,324,830 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010658   ⟹   ENSHGLP00000010541
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247849,546,509 - 9,725,987 (+)Ensembl
Naked mole-rat maternal Ensembl553,033,419 - 53,213,802 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000010659   ⟹   ENSHGLP00000010542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247849,548,069 - 9,726,960 (+)Ensembl
Naked mole-rat maternal Ensembl553,033,419 - 53,211,472 (-)Ensembl
RefSeq Acc Id: XM_004856614   ⟹   XP_004856671
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,546,489 - 9,726,960 (+)NCBI
RefSeq Acc Id: XM_004856615   ⟹   XP_004856672
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,549,001 - 9,726,960 (+)NCBI
RefSeq Acc Id: XM_004856616   ⟹   XP_004856673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,545,529 - 9,726,960 (+)NCBI
RefSeq Acc Id: XM_004856617   ⟹   XP_004856674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,548,085 - 9,726,960 (+)NCBI
RefSeq Acc Id: XM_004856618   ⟹   XP_004856675
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,547,958 - 9,726,960 (+)NCBI
RefSeq Acc Id: XM_021237865   ⟹   XP_021093524
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247849,547,155 - 9,726,960 (+)NCBI
RefSeq Acc Id: XP_004856673   ⟸   XM_004856616
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856671   ⟸   XM_004856614
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093524   ⟸   XM_021237865
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856675   ⟸   XM_004856618
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856674   ⟸   XM_004856617
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856672   ⟸   XM_004856615
- UniProtKB: A0A0P6JG30 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010542   ⟸   ENSHGLT00000010659
Ensembl Acc Id: ENSHGLP00000010541   ⟸   ENSHGLT00000010658


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007562 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010658 ENTREZGENE
  ENSHGLT00000010659 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  ZnFinger_BTB_dom_contain UniProtKB/TrEMBL
KEGG Report hgl:101714671 UniProtKB/TrEMBL
NCBI Gene Zbtb16 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 7A UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6JG30 ENTREZGENE, UniProtKB/TrEMBL