HOMER2 (homer scaffold protein 2)

Advanced Search (OLGA)

Gene: HOMER2 (homer scaffold protein 2) Chlorocebus sabaeus

Analyze

Symbol:

HOMER2

Name:

homer scaffold protein 2

RGD ID:

18633663

Description:

ENCODES a protein that exhibits glutamate receptor binding (ortholog); identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); calcium-mediated signaling (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autosomal dominant nonsyndromic deafness 68 (ortholog); Bloom syndrome (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homer protein homolog 2; homer scaffolding protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	2,667,718 - 2,810,238 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	2,706,134 - 2,803,372 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	44,281,540 - 44,425,488 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

autosomal dominant nonsyndromic deafness 68 (ISO)

Bloom syndrome (ISO)

Cocaine-Related Disorders (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral response to cocaine (IEA,ISO)

calcium-mediated signaling (IEA,ISO)

G protein-coupled glutamate receptor signaling pathway (IEA)

negative regulation of calcineurin-NFAT signaling cascade (IEA)

negative regulation of interleukin-2 production (IEA)

regulation of G protein-coupled receptor signaling pathway (IEA,ISO)

sensory perception of sound (IEA)

Cellular Component

apical part of cell (IEA)

cytoplasm (IEA)

cytosol (IEA)

dendrite (ISO)

glutamatergic synapse (IEA,ISO)

neuronal cell body (ISO)

plasma membrane (ISO)

postsynaptic density (IEA,ISO)

stereocilium tip (IEA)

synapse (IEA)

Molecular Function

actin binding (IEA)

G protein-coupled glutamate receptor binding (IEA)

glutamate receptor binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

protein-containing complex binding (ISO)

synaptic receptor adaptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HOMER2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	2,667,718 - 2,810,238 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	2,706,134 - 2,803,372 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	44,281,540 - 44,425,488 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

HOMER2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	82,834,661 - 82,986,157 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	82,836,946 - 82,986,153 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	83,517,735 - 83,621,472 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	81,314,789 - 81,412,477 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	81,314,788 - 81,412,477	NCBI
Celera	15	60,965,171 - 61,062,906 (+)	NCBI		Celera
Cytogenetic Map	15	q25.2	NCBI
HuRef	15	59,787,302 - 59,884,988 (-)	NCBI		HuRef
CHM1_1	15	83,259,957 - 83,363,087 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	80,701,241 - 80,850,554 (-)	NCBI		T2T-CHM13v2.0

Homer2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	81,250,229 - 81,356,673 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	81,250,229 - 81,357,275 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	81,600,481 - 81,706,925 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	81,600,481 - 81,707,527 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	88,745,367 - 88,851,811 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	81,483,228 - 81,580,639 (-)	NCBI		MGSCv36	mm8
Celera	7	79,009,788 - 79,104,812 (-)	NCBI		Celera
Cytogenetic Map	7	D3	NCBI
cM Map	7	45.71	NCBI

Homer2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	144,968,207 - 145,069,022 (-)	NCBI		GRCr8
mRatBN7.2	1	135,558,977 - 135,659,780 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	135,567,414 - 135,659,772 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	143,488,882 - 143,581,178 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	150,658,320 - 150,750,396 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	143,564,822 - 143,658,186 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	143,443,300 - 143,535,579 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	143,443,300 - 143,535,583 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	144,387,025 - 144,478,034 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	137,827,128 - 137,933,089 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	137,905,533 - 138,012,215 (-)	NCBI
Celera	1	127,618,673 - 127,711,006 (-)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

Homer2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	13,741,161 - 13,818,060 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	13,671,115 - 13,828,413 (+)	NCBI	ChiLan1.0	ChiLan1.0

HOMER2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	72,906,093 - 73,051,976 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	77,066,987 - 77,212,497 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	62,617,905 - 62,762,903 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	80,731,863 - 80,876,442 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	80,737,570 - 80,784,729 (-)	Ensembl	panpan1.1		panPan2

Homer2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	128,699,719 - 128,836,080 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936483	17,507,533 - 17,539,105 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936483	17,500,962 - 17,634,804 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOMER2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	52,001,579 - 52,096,828 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	52,001,253 - 52,104,426 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	57,489,011 - 57,584,450 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Homer2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	18,635,283 - 18,721,984 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	18,626,353 - 18,751,279 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007990232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007990238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037987783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037987784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000015387 ⟹ ENSCSAP00000013328

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	29	2,706,134 - 2,803,372 (+)	Ensembl

RefSeq Acc Id:

XM_007990232 ⟹ XP_007988423

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	29	2,667,718 - 2,804,068 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	44,289,228 - 44,425,488 (-)	NCBI

Sequence:

show sequence

ATCACCTGATTTCCGCTTCCGGCGGGCTAATGTTGAGGGTGCCTGTCAAGTCTCGCGATAACTA
AGGCTCGTCGTGTGGCTCGCTTTGCTACAGATCGCTTCTTCAAATACTGGCGCAACGCCCAGAG
CTCGATGAGGTGTGGGCAAGTAGCTGTCTGAAGGTGGATGATGCCCTCCATGCGCTTTCAGCCT
GCCTGGTGGGTGGCCAGTCGAAAACGTCGCCGTCTATTAAGCTCCTTTGACTGGGAGCCGTGGA
CGGGTAGAGACGGAAGTTCTGGGAATCACCGGAGAAGGGAGGGAAAGGCTCCTTCGGCCGCCTG
CTCCCGGCGTCTTCGTGGGGAACTGAGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTC
CAGATTGACCCCAACACCAAGAAGAACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCT
ACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCAT
AAACAGCACAATTACACCGAATATGACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCC
GACAGCAGAGCCAACACGGTGTTTGGTTTGGGGTTTTCCTCTGAGCAGCAGCTGACAAAGTTTG
CAGAGAAATTCCAGGAGGTGAAAGAAGCTGCCAAGATAGCCAAAGACAAGACGCAGGAGAAAAT
CGAGACCTCAAGTGATCATTCCCAAGAATCTGGGCGTGAAACCCCATCTTCTACTCAGGCATCC
AGTGTCAATGGGACGGACGATGAAAAGGCCTCTCACACCGGTCCAGCCAACACGCACCTGAAGT
CTGAGAATGATAAGCTGAAGATTGCCTTGACGCAGAGCGCTGCCAACGTGAAGAAATGGGAGAT
CGAGCTGCAGACCCTGCGGGAGAGCAATGCCCGGCTGACCACAGCACTGCAGGAGTCGGCAGCC
AGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATCTGCCGCGACGAGAATGACCGGCTCCGCAACA
AGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAACAGAGAGAAGGAGAAGAACACACAACT
GAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAAAGATCTC
CGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAG
AGGCGGCAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGA
GGAGAGCAAATACCGACAGCGCCACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGAT
GGGAAGATTGACGACCTGCATGACTTCCGCCGAGGCCTCTCCAAGCTGGGCACCGATAACTAGG
GCTGGCCGAGGCCCAGGCCCCGCCTGTGAGTCCCAAGCGTGTGTGCGAGACCAGATAGCTCTAG
GACGTTCTTCTGTGTGCATTGCTTCTGTAAATGCAGGCGCAGTTTGTCGTGTTTCCAAACCAGT
TGTGCCGTCCACTCCTTTCCAGAATAGAAATCTCCTCTCGCTTCTCTGGCCTTGTGAGGTTGTG
GACAACTGGAAGATTCTGACTCAGGAATCCAGAACTAGGTCTACCTTCAACATTTACGCAGTCA
GGGCAGGGATGTTTATATCTTTCATAAGGGCTGTTGCAACCATATGAACTGAAAAAATGCATTT
TCTAATCCAAATATTGATATTCTTTACACCAGGCCATCAGGCTCCTTTTATCAAATAGCATTCA
GAGTATTTGAATGTCCATCAGGCACCAGCCCCGGGGGGCACAGAGAGAACAACATTCCTCTCCA
TCAACATCGAGAGGCTTTATTTAAAACAACTGTTTAGTGGAAACTTATTGAGAGATGGAAAACA
AGCTTCTGGTGGGTGCATTTTCTGACCCGGGAGTCGCCTGCAGCCACAATACTGCCCCTGCCCC
CCAGTTTGTATGGTTGCGACAGTGTTCCTTTTCTTGGTTTTAATTTCTGAGCAGATGATTGTGC
TGTGGGAACAGCACACAGTGAGGGTGCCTAGCACAATGCCTGGCACTAAGTAGGTGCTTAATAA
ATGTTTGTTTTACTAAA

hide sequence

RefSeq Acc Id:

XM_007990233 ⟹ XP_007988424

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	29	2,667,718 - 2,810,238 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	44,281,540 - 44,425,488 (-)	NCBI

Sequence:

show sequence

ATCACCTGATTTCCGCTTCCGGCGGGCTAATGTTGAGGGTGCCTGTCAAGTCTCGCGATAACTA
AGGCTCGTCGTGTGGCTCGCTTTGCTACAGATCGCTTCTTCAAATACTGGCGCAACGCCCAGAG
CTCGATGAGGTGTGGGCAAGTAGCTGTCTGAAGGTGGATGATGCCCTCCATGCGCTTTCAGCCT
GCCTGGTGGGTGGCCAGTCGAAAACGTCGCCGTCTATTAAGCTCCTTTGACTGGGAGCCGTGGA
CGGGTAGAGACGGAAGTTCTGGGAATCACCGGAGAAGGGAGGGAAAGGCTCCTTCGGCCGCCTG
CTCCCGGCGTCTTCGTGGGGAACTGAGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTC
CAGATTGACCCCAACACCAAGAAGAACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCT
ACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCAT
AAACAGCACAATTACACCGAATATGACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCC
GACAGCAGAGCCAACACGGTGTTTGGTTTGGGGTTTTCCTCTGAGCAGCAGCTGACAAAGTTTG
CAGAGAAATTCCAGGAGGTGAAAGAAGCTGCCAAGATAGCCAAAGACAAGACGCAGGAGAAAAT
CGAGACCTCAAGTGATCATTCCCAAGAATCTGGGCGTGAAACCCCATCTTCTACTCAGGCATCC
AGTGTCAATGGGACGGACGATGAAAAGGCCTCTCACACCGGTCCAGCCAACACGCACCTGAAGT
CTGAGAATGATAAGCTGAAGATTGCCTTGACGCAGAGCGCTGCCAACGTGAAGAAATGGGAGAT
CGAGCTGCAGACCCTGCGGGAGAGCAATGCCCGGCTGACCACAGCACTGCAGGAGTCGGCAGCC
AGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATCTGCCGCGACGAGAATGACCGGCTCCGCAACA
AGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAACAGAGAGAAGGAGAAGAACACACAACT
GAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAAAGATCTC
CGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAG
AGGCGGCAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGA
GGAGAGCAAATACCGACAGCGCCACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGAT
GGGAAGATTGACGACCTGCATGACTTCCGCCGAGGCCTCTCCAAGCTGGGCACCGATAACTAGG
GCTGGCCGAGGCCCAGGCCCCGCCTTTAATTCTCTGATCTGGCTGGGCGT

hide sequence

RefSeq Acc Id:

XM_007990234 ⟹ XP_007988425

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	29	2,667,718 - 2,804,068 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	44,289,227 - 44,425,468 (-)	NCBI

Sequence:

show sequence

ATCACCTGATTTCCGCTTCCGGCGGGCTAATGTTGAGGGTGCCTGTCAAGTCTCGCGATAACTA
AGGCTCGTCGTGTGGCTCGCTTTGCTACAGATCGCTTCTTCAAATACTGGCGCAACGCCCAGAG
CTCGATGAGGTGTGGGCAAGTAGCTGTCTGAAGGTGGATGATGCCCTCCATGCGCTTTCAGCCT
GCCTGGTGGGTGGCCAGTCGAAAACGTCGCCGTCTATTAAGCTCCTTTGACTGGGAGCCGTGGA
CGGGTAGAGACGGAAGTTCTGGGAATCACCGGAGAAGGGAGGGAAAGGCTCCTTCGGCCGCCTG
CTCCCGGCGTCTTCGTGGGGAACTGAGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTC
CAGATTGACCCCAACACCAAGAAGAACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCT
ACTTCTATGATGTCACAAGGAACAGCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCAT
AAACAGCACAATTACACCGAATATGACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCC
GACAGCAGAGCCAACACGGTGTTTGGTTTGGGGTTTTCCTCTGAGCAGCAGCTGACAAAGTTTG
CAGAGAAATTCCAGGAGGTGAAAGAAGCTGCCAAGATAGCCAAAGACAAGACGCAGGAGAAAAT
CGAGACCTCAAGTGATCATTCCCAAGCATCCAGTGTCAATGGGACGGACGATGAAAAGGCCTCT
CACACCGGTCCAGCCAACACGCACCTGAAGTCTGAGAATGATAAGCTGAAGATTGCCTTGACGC
AGAGCGCTGCCAACGTGAAGAAATGGGAGATCGAGCTGCAGACCCTGCGGGAGAGCAATGCCCG
GCTGACCACAGCACTGCAGGAGTCGGCAGCCAGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATC
TGCCGCGACGAGAATGACCGGCTCCGCAACAAGATTGATGAGCTGGAAGAACAATGCAGTGAGA
TCAACAGAGAGAAGGAGAAGAACACACAACTGAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCT
CCGAGAAAAGGAGACAGAGCTGAAAGATCTCCGAAAACAAAGTGAAATCATACCTCAGCTCATG
TCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCGGCAGAGAGAGACAATCAAAACCTGGAAG
ACAAAGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATACCGACAGCGCCACCTGAAGGT
GGAGTTGAAGAGCTTCCTGGAGGTGCTGGATGGGAAGATTGACGACCTGCATGACTTCCGCCGA
GGCCTCTCCAAGCTGGGCACCGATAACTAGGGCTGGCCGAGGCCCAGGCCCCGCCTGTGAGTCC
CAAGCGTGTGTGCGAGACCAGATAGCTCTAGGACGTTCTTCTGTGTGCATTGCTTCTGTAAATG
CAGGCGCAGTTTGTCGTGTTTCCAAACCAGTTGTGCCGTCCACTCCTTTCCAGAATAGAAATCT
CCTCTCGCTTCTCTGGCCTTGTGAGGTTGTGGACAACTGGAAGATTCTGACTCAGGAATCCAGA
ACTAGGTCTACCTTCAACATTTACGCAGTCAGGGCAGGGATGTTTATATCTTTCATAAGGGCTG
TTGCAACCATATGAACTGAAAAAATGCATTTTCTAATCCAAATATTGATATTCTTTACACCAGG
CCATCAGGCTCCTTTTATCAAATAGCATTCAGAGTATTTGAATGTCCATCAGGCACCAGCCCCG
GGGGGCACAGAGAGAACAACATTCCTCTCCATCAACATCGAGAGGCTTTATTTAAAACAACTGT
TTAGTGGAAACTTATTGAGAGATGGAAAACAAGCTTCTGGTGGGTGCATTTTCTGACCCGGGAG
TCGCCTGCAGCCACAATACTGCCCCTGCCCCCCAGTTTGTATGGTTGCGACAGTGTTCCTTTTC
TTGGTTTTAATTTCTGAGCAGATGATTGTGCTGTGGGAACAGCACACAGTGAGGGTGCCTAGCA
CAATGCCTGGCACTAAGTAGGTGCTTAATAAATGTTTGTTTTACTAAA

hide sequence

RefSeq Acc Id:

XM_007990236 ⟹ XP_007988427

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	29	2,706,037 - 2,804,074 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	44,289,228 - 44,388,452 (-)	NCBI

Sequence:

show sequence

CGCCTGGCGGCGGTGGCGGCGGCGGCAGCGGCAGCAGTGGCAGCCGCGCAGCCCTGCGGAATGG
AGCGGCGCCGGGGCTGAGCCGGGCGCGCACGGGCCGCCGCATGTGCCGCGCGGGGAGCGGCTCT
CTAGCGGGCGGAGAGCGAGCGCGAAAGGCCCCGTCGGAGCGGCCGCCGGAGCAGCGCCGGAGAT
GGGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTCCAGATTGACCCCAACACCAAGAAG
AACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCTACTTCTATGATGTCACAAGGAACA
GCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCATAAACAGCACAATTACACCGAATAT
GACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCCGACAGCAGAGCCAACACGGTGTTT
GGTTTGGGGTTTTCCTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAAAG
AAGCTGCCAAGATAGCCAAAGACAAGACGCAGGAGAAAATCGAGACCTCAAGTGATCATTCCCA
AGAATCTGGGCGTGAAACCCCATCTTCTACTCAGGCATCCAGTGTCAATGGGACGGACGATGAA
AAGGCCTCTCACACCGGTCCAGCCAACACGCACCTGAAGTCTGAGAATGATAAGCTGAAGATTG
CCTTGACGCAGAGCGCTGCCAACGTGAAGAAATGGGAGATCGAGCTGCAGACCCTGCGGGAGAG
CAATGCCCGGCTGACCACAGCACTGCAGGAGTCGGCAGCCAGTGTGGAGCAGTGGAAGAGGCAG
TTCTCCATCTGCCGCGACGAGAATGACCGGCTCCGCAACAAGATTGATGAGCTGGAAGAACAAT
GCAGTGAGATCAACAGAGAGAAGGAGAAGAACACACAACTGAAGAGGAGGATCGAGGAGCTGGA
GGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAAAGATCTCCGAAAACAAAGTGAAATCATACCT
CAGCTCATGTCAGAGTGCGAATATGTCTCTGAGAAGCTAGAGGCGGCAGAGAGAGACAATCAAA
ACCTGGAAGACAAAGTGCGTTCCTTAAAGACAGACATTGAGGAGAGCAAATACCGACAGCGCCA
CCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGTGCTGGATGGGAAGATTGACGACCTGCATGAC
TTCCGCCGAGGCCTCTCCAAGCTGGGCACCGATAACTAGGGCTGGCCGAGGCCCAGGCCCCGCC
TGTGAGTCCCAAGCGTGTGTGCGAGACCAGATAGCTCTAGGACGTTCTTCTGTGTGCATTGCTT
CTGTAAATGCAGGCGCAGTTTGTCGTGTTTCCAAACCAGTTGTGCCGTCCACTCCTTTCCAGAA
TAGAAATCTCCTCTCGCTTCTCTGGCCTTGTGAGGTTGTGGACAACTGGAAGATTCTGACTCAG
GAATCCAGAACTAGGTCTACCTTCAACATTTACGCAGTCAGGGCAGGGATGTTTATATCTTTCA
TAAGGGCTGTTGCAACCATATGAACTGAAAAAATGCATTTTCTAATCCAAATATTGATATTCTT
TACACCAGGCCATCAGGCTCCTTTTATCAAATAGCATTCAGAGTATTTGAATGTCCATCAGGCA
CCAGCCCCGGGGGGCACAGAGAGAACAACATTCCTCTCCATCAACATCGAGAGGCTTTATTTAA
AACAACTGTTTAGTGGAAACTTATTGAGAGATGGAAAACAAGCTTCTGGTGGGTGCATTTTCTG
ACCCGGGAGTCGCCTGCAGCCACAATACTGCCCCTGCCCCCCAGTTTGTATGGTTGCGACAGTG
TTCCTTTTCTTGGTTTTAATTTCTGAGCAGATGATTGTGCTGTGGGAACAGCACACAGTGAGGG
TGCCTAGCACAATGCCTGGCACTAAGTAGGTGCTTAATAAATGTTTGTTTTACTAAATGTGTA

hide sequence

RefSeq Acc Id:

XM_007990237 ⟹ XP_007988428

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	29	2,706,037 - 2,804,068 (+)	NCBI
Vero_WHO_p1.0	NW_023666059	44,289,228 - 44,388,449 (-)	NCBI

Sequence:

show sequence

CGCCTGGCGGCGGTGGCGGCGGCGGCAGCGGCAGCAGTGGCAGCCGCGCAGCCCTGCGGAATGG
AGCGGCGCCGGGGCTGAGCCGGGCGCGCACGGGCCGCCGCATGTGCCGCGCGGGGAGCGGCTCT
CTAGCGGGCGGAGAGCGAGCGCGAAAGGCCCCGTCGGAGCGGCCGCCGGAGCAGCGCCGGAGAT
GGGAGAACAGCCCATCTTCACCACCCGAGCGCATGTCTTCCAGATTGACCCCAACACCAAGAAG
AACTGGATGCCTGCGAGCAAGCAGGCGGTCACCGTTTCCTACTTCTATGATGTCACAAGGAACA
GCTATCGGATCATCAGTGTGGACGGAGCCAAGGTGATCATAAACAGCACAATTACACCGAATAT
GACCTTCACCAAAACGTCACAGAAGTTTGGGCAGTGGGCCGACAGCAGAGCCAACACGGTGTTT
GGTTTGGGGTTTTCCTCTGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCAGGAGGTGAAAG
AAGCTGCCAAGATAGCCAAAGACAAGACGCAGGAGAAAATCGAGACCTCAAGTGATCATTCCCA
AGCATCCAGTGTCAATGGGACGGACGATGAAAAGGCCTCTCACACCGGTCCAGCCAACACGCAC
CTGAAGTCTGAGAATGATAAGCTGAAGATTGCCTTGACGCAGAGCGCTGCCAACGTGAAGAAAT
GGGAGATCGAGCTGCAGACCCTGCGGGAGAGCAATGCCCGGCTGACCACAGCACTGCAGGAGTC
GGCAGCCAGTGTGGAGCAGTGGAAGAGGCAGTTCTCCATCTGCCGCGACGAGAATGACCGGCTC
CGCAACAAGATTGATGAGCTGGAAGAACAATGCAGTGAGATCAACAGAGAGAAGGAGAAGAACA
CACAACTGAAGAGGAGGATCGAGGAGCTGGAGGCAGAGCTCCGAGAAAAGGAGACAGAGCTGAA
AGATCTCCGAAAACAAAGTGAAATCATACCTCAGCTCATGTCAGAGTGCGAATATGTCTCTGAG
AAGCTAGAGGCGGCAGAGAGAGACAATCAAAACCTGGAAGACAAAGTGCGTTCCTTAAAGACAG
ACATTGAGGAGAGCAAATACCGACAGCGCCACCTGAAGGTGGAGTTGAAGAGCTTCCTGGAGGT
GCTGGATGGGAAGATTGACGACCTGCATGACTTCCGCCGAGGCCTCTCCAAGCTGGGCACCGAT
AACTAGGGCTGGCCGAGGCCCAGGCCCCGCCTGTGAGTCCCAAGCGTGTGTGCGAGACCAGATA
GCTCTAGGACGTTCTTCTGTGTGCATTGCTTCTGTAAATGCAGGCGCAGTTTGTCGTGTTTCCA
AACCAGTTGTGCCGTCCACTCCTTTCCAGAATAGAAATCTCCTCTCGCTTCTCTGGCCTTGTGA
GGTTGTGGACAACTGGAAGATTCTGACTCAGGAATCCAGAACTAGGTCTACCTTCAACATTTAC
GCAGTCAGGGCAGGGATGTTTATATCTTTCATAAGGGCTGTTGCAACCATATGAACTGAAAAAA
TGCATTTTCTAATCCAAATATTGATATTCTTTACACCAGGCCATCAGGCTCCTTTTATCAAATA
GCATTCAGAGTATTTGAATGTCCATCAGGCACCAGCCCCGGGGGGCACAGAGAGAACAACATTC
CTCTCCATCAACATCGAGAGGCTTTATTTAAAACAACTGTTTAGTGGAAACTTATTGAGAGATG
GAAAACAAGCTTCTGGTGGGTGCATTTTCTGACCCGGGAGTCGCCTGCAGCCACAATACTGCCC
CTGCCCCCCAGTTTGTATGGTTGCGACAGTGTTCCTTTTCTTGGTTTTAATTTCTGAGCAGATG
ATTGTGCTGTGGGAACAGCACACAGTGAGGGTGCCTAGCACAATGCCTGGCACTAAGTAGGTGC
TTAATAAATGTTTGTTTTACTAAA

hide sequence

RefSeq Acc Id:

XM_037987783 ⟹ XP_037843711

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666059	44,284,118 - 44,425,488 (-)	NCBI

RefSeq Acc Id:

XM_037987784 ⟹ XP_037843712

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666059	44,289,227 - 44,388,251 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007988423	(Get FASTA)	NCBI Sequence Viewer
	XP_007988424	(Get FASTA)	NCBI Sequence Viewer
	XP_007988425	(Get FASTA)	NCBI Sequence Viewer
	XP_007988427	(Get FASTA)	NCBI Sequence Viewer
	XP_007988428	(Get FASTA)	NCBI Sequence Viewer
	XP_037843711	(Get FASTA)	NCBI Sequence Viewer
	XP_037843712	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013328
	ENSCSAP00000013328.1

RefSeq Acc Id:	XP_007988424 ⟸ XM_007990233
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007988423 ⟸ XM_007990232
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007988425 ⟸ XM_007990234
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007988427 ⟸ XM_007990236
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_007988428 ⟸ XM_007990237
- Peptide Label:	isoform X5
- UniProtKB:	A0A0D9RXI9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000013328 ⟸ ENSCSAT00000015387

RefSeq Acc Id:	XP_037843711 ⟸ XM_037987783
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037843712 ⟸ XM_037987784
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017295	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015387.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1700	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	Homer	UniProtKB/TrEMBL
	Homer_EVH1	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	WH1/EVH1_dom	UniProtKB/TrEMBL
NCBI Gene	HOMER2	ENTREZGENE
PANTHER	HOMER PROTEIN HOMOLOG 2	UniProtKB/TrEMBL
	PTHR10918	UniProtKB/TrEMBL
Pfam	WH1	UniProtKB/TrEMBL
PROSITE	WH1	UniProtKB/TrEMBL
SMART	WH1	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
UniProt	A0A0D9RXI9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM