C3AR1 (complement C3a receptor 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C3AR1 (complement C3a receptor 1) Chlorocebus sabaeus
Analyze
Symbol: C3AR1
Name: complement C3a receptor 1
RGD ID: 18380233
Description: ENCODES a protein that exhibits complement component C3a binding (ortholog); complement component C3a receptor activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); positive regulation of cell migration (ortholog); positive regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); asthma (ortholog); atypical hemolytic-uremic syndrome (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C3a anaphylatoxin chemotactic receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,128,192 - 8,135,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,128,620 - 8,130,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089222,592 - 230,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C3AR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,128,192 - 8,135,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,128,620 - 8,130,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089222,592 - 230,801 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C3AR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,056,844 - 8,066,359 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,056,844 - 8,066,359 (-)EnsemblGRCh38hg38GRCh38
GRCh37128,209,440 - 8,218,955 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,102,186 - 8,110,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 34128,102,185 - 8,110,222NCBI
Celera129,787,991 - 9,796,026 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,022,647 - 8,030,683 (-)NCBIHuRef
CHM1_1128,210,143 - 8,218,179 (-)NCBICHM1_1
T2T-CHM13v2.0128,070,449 - 8,079,963 (-)NCBIT2T-CHM13v2.0
C3ar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,824,099 - 122,833,116 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,824,097 - 122,833,120 (-)EnsemblGRCm39 Ensembl
GRCm386122,847,140 - 122,856,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,847,138 - 122,856,161 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,797,158 - 122,806,175 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,813,577 - 122,821,624 (-)NCBIMGSCv36mm8
Celera6124,649,306 - 124,658,328 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map657.93NCBI
C3ar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,747,419 - 157,756,609 (-)NCBIGRCr8
mRatBN7.24156,074,747 - 156,084,680 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,075,389 - 156,084,701 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,347,387 - 162,354,238 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,130,613 - 158,137,464 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,775,694 - 156,782,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,681,767 - 155,691,240 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,684,029 - 155,690,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,702,646 - 222,711,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,326,402 - 159,333,433 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,571,333 - 159,578,369 (-)NCBI
Celera4144,898,053 - 144,904,840 (-)NCBICelera
Cytogenetic Map4q42NCBI
C3ar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,707,689 - 6,715,689 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,707,003 - 6,715,689 (-)NCBIChiLan1.0ChiLan1.0
C3AR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,614,735 - 13,622,861 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,611,497 - 13,619,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,178,064 - 8,186,206 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,220,505 - 8,228,480 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,220,933 - 8,222,381 (-)Ensemblpanpan1.1panPan2
C3AR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,431,745 - 37,439,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,433,792 - 37,435,246 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,176,099 - 9,184,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,785,758 - 37,793,862 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,785,991 - 37,793,787 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,660,414 - 37,668,519 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,701,675 - 37,709,781 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,662,656 - 8,670,749 (+)NCBIUU_Cfam_GSD_1.0
C3ar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,162,915 - 99,170,683 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936892347,842 - 349,296 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936892347,547 - 355,143 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3AR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,088,778 - 63,098,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
C3ar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248605,197,619 - 5,199,043 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248605,196,621 - 5,204,686 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007967489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000019313   ⟹   ENSCSAP00000018733
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl118,128,620 - 8,130,062 (-)Ensembl
RefSeq Acc Id: XM_007967489   ⟹   XP_007965680
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1118,128,192 - 8,135,517 (-)NCBI
Vero_WHO_p1.0NW_023666089222,592 - 230,801 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007965680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018733.1
RefSeq Acc Id: XP_007965680   ⟸   XM_007967489
- UniProtKB: A0A0D9SCZ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018733   ⟸   ENSCSAT00000019313


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019223 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019313.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Anaphtx_C3AR1 UniProtKB/TrEMBL
  Anphylx_rcpt UniProtKB/TrEMBL
  Formyl_rcpt-rel UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report csab:103218520 UniProtKB/TrEMBL
NCBI Gene C3AR1 ENTREZGENE
PANTHER PTHR24225 UniProtKB/TrEMBL
  PTHR24225:SF28 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS ANPHYLATOXNR UniProtKB/TrEMBL
  C3ANPHYLTXNR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SCZ4 ENTREZGENE, UniProtKB/TrEMBL