CAMSAP2 (calmodulin regulated spectrin associated protein family member 2) - Rat Genome Database

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Gene: CAMSAP2 (calmodulin regulated spectrin associated protein family member 2) Homo sapiens
Analyze
Symbol: CAMSAP2
Name: calmodulin regulated spectrin associated protein family member 2
RGD ID: 1604039
HGNC Page HGNC:29188
Description: Enables microtubule minus-end binding activity. Involved in several processes, including axon development; regulation of dendrite development; and regulation of organelle organization. Located in Golgi apparatus; cytosol; and microtubule cytoskeleton.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calmodulin regulated spectrin-associated protein 1-like 1; calmodulin regulated spectrin-associated protein family, member 2; calmodulin-regulated spectrin-associated protein 1-like protein 1; calmodulin-regulated spectrin-associated protein 2; CAMSAP1L1; KIAA1078; MGC150680; MGC150681; RP11-93N17.1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381200,738,893 - 200,860,704 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1200,738,893 - 200,860,707 (+)EnsemblGRCh38hg38GRCh38
GRCh371200,708,021 - 200,829,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361198,975,309 - 199,096,455 (+)NCBINCBI36Build 36hg18NCBI36
Celera1173,831,311 - 173,953,903 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1171,875,247 - 171,996,963 (+)NCBIHuRef
CHM1_11202,131,398 - 202,252,507 (+)NCBICHM1_1
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CAMSAP2Humanfamilial adult myoclonic epilepsy 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Epilepsy more ...ClinVarPMID:28492532
CAMSAP2Humangastrointestinal stromal tumor  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
CAMSAP2HumanHypokalemic Periodic Paralysis, Type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hypokalemic periodic paralysis and type 1ClinVarPMID:28492532
CAMSAP2Humanparathyroid carcinoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
CAMSAP2Humanprimary ovarian insufficiency  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868

1 to 20 of 75 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CAMSAP2Human1,2-dimethylhydrazine decreases expressionISOCamsap2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CAMSAP2 mRNACTDPMID:22206623
CAMSAP2Human2,3',4,4',5-Pentachlorobiphenyl increases expressionISOCamsap2 (Mus musculus)64804642 more ...CTDPMID:31388691
CAMSAP2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCamsap2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CAMSAP2 mRNACTDPMID:21570461
CAMSAP2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCamsap2 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of CAMSAP2 mRNACTDPMID:33387578
CAMSAP2Human2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of CAMSAP2 mRNACTDPMID:30851411
CAMSAP2Human3,4-methylenedioxymethamphetamine decreases expressionISOCamsap2 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of CAMSAP2 mRNACTDPMID:26251327
CAMSAP2Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of CAMSAP2 mRNACTDPMID:28628672
CAMSAP2Human4,4'-sulfonyldiphenol decreases methylationISOCamsap2 (Mus musculus)6480464bisphenol S results in decreased methylation of CAMSAP2 promoterCTDPMID:33297965
CAMSAP2Human4-hydroxyphenyl retinamide decreases expressionISOCamsap2 (Mus musculus)6480464Fenretinide results in decreased expression of CAMSAP2 mRNACTDPMID:28973697
CAMSAP2Human6-propyl-2-thiouracil decreases expressionISOCamsap2 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of CAMSAP2 mRNACTDPMID:24780913
CAMSAP2Humanaflatoxin B1 increases expressionISOCamsap2 (Mus musculus)6480464Aflatoxin B1 results in increased expression of CAMSAP2 mRNACTDPMID:19770486
CAMSAP2Humanaflatoxin B1 increases expressionISOCamsap2 (Rattus norvegicus)6480464Aflatoxin B1 results in increased expression of CAMSAP2 mRNACTDPMID:33354967
CAMSAP2Humanall-trans-retinoic acid increases expressionISOCamsap2 (Rattus norvegicus)6480464Tretinoin results in increased expression of CAMSAP2 mRNACTDPMID:20488242
CAMSAP2Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of CAMSAP2 mRNACTDPMID:23724009
CAMSAP2Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of CAMSAP2 geneCTDPMID:25304211
CAMSAP2Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of CAMSAP2 geneCTDPMID:25304211
CAMSAP2Humanarsenite(3-) multiple interactionsEXP 6480464arsenite inhibits the reaction [G3BP1 protein binds to CAMSAP2 mRNA]CTDPMID:32406909
CAMSAP2Humanatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of CAMSAP2 mRNACTDPMID:22378314
CAMSAP2Humanatrazine affects methylationISOCamsap2 (Rattus norvegicus)6480464Atrazine affects the methylation of CAMSAP2 geneCTDPMID:35440735
CAMSAP2Humanbenzo[a]pyrene diol epoxide I decreases expressionEXP 64804647 more ...CTDPMID:19150397

1 to 20 of 75 rows

Biological Process
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CAMSAP2Humanaxon development involved_inIEAUniProtKB:D4AEC2 and ensembl:ENSRNOP00000057155150520179 EnsemblGO_REF:0000107
CAMSAP2Humanaxon development involved_inIDA 150520179 PMID:24908486UniProtPMID:24908486
CAMSAP2Humancytoplasmic microtubule organization involved_inIBAFB:FBgn0263197 more ...150520179 GO_CentralGO_REF:0000033
CAMSAP2Humanmicrotubule cytoskeleton organization involved_inIDA 150520179 PMID:24486153 more ...UniProtPMID:24486153 more ...
CAMSAP2Humanmicrotubule cytoskeleton organization involved_inIMP 150520179 PMID:23169647UniProtPMID:23169647
CAMSAP2Humannegative regulation of microtubule depolymerization involved_inIBAFB:FBgn0263197 and PANTHER:PTN001091246150520179 GO_CentralGO_REF:0000033
CAMSAP2Humanneuron projection development involved_inIEAInterPro:IPR031372150520179 InterProGO_REF:0000002
CAMSAP2Humanregulation of dendrite development involved_inIEAUniProtKB:D4AEC2 and ensembl:ENSRNOP00000057155150520179 EnsemblGO_REF:0000107
CAMSAP2Humanregulation of dendrite development involved_inIDA 150520179 PMID:24908486UniProtPMID:24908486
CAMSAP2Humanregulation of Golgi organization involved_inIDA 150520179 PMID:27666745UniProtPMID:27666745
CAMSAP2Humanregulation of microtubule polymerization involved_inIDA 150520179 PMID:24486153 and PMID:24706919UniProtPMID:24486153 and PMID:24706919
CAMSAP2Humanregulation of organelle organization involved_inIMP 150520179 PMID:23169647UniProtPMID:23169647
1 to 12 of 12 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CAMSAP2Humancell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
CAMSAP2Humancentrosome located_inIDA 150520179 PMID:23169647UniProtPMID:23169647
CAMSAP2Humanciliary basal body located_inISSUniProtKB:Q8C1B1150520179 UniProtGO_REF:0000024
CAMSAP2Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
CAMSAP2Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
CAMSAP2Humancytoskeleton located_inIEAUniProtKB-SubCell:SL-0090150520179 UniProtGO_REF:0000044
CAMSAP2Humancytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
CAMSAP2Humancytosol located_inIDA 150520179 HPAGO_REF:0000052
CAMSAP2HumanGolgi apparatus located_inIEAUniProtKB-SubCell:SL-0132150520179 UniProtGO_REF:0000044
CAMSAP2HumanGolgi apparatus located_inIDA 150520179 PMID:27666745HPAGO_REF:0000052 and PMID:27666745
CAMSAP2HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
CAMSAP2Humanmicrotubule located_inIEAUniRule:UR000400396150520179 UniProtGO_REF:0000104
CAMSAP2Humanmicrotubule located_inIEAUniProtKB-KW:KW-0493150520179 UniProtGO_REF:0000043
CAMSAP2Humanmicrotubule cytoskeleton located_inISOCamsap2 (Mus musculus)9068941 PMID:23169647MGIPMID:23169647
CAMSAP2Humanmicrotubule end located_inIDA 150520179 HPAGO_REF:0000052
CAMSAP2Humanmicrotubule minus-end located_inIDA 150520179 PMID:24486153 more ...UniProtPMID:24486153 more ...
CAMSAP2Humanmicrotubule minus-end located_inIBAMGI:1916947 more ...150520179 GO_CentralGO_REF:0000033
1 to 17 of 17 rows

Molecular Function

  

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CAMSAP2HumanGastrointestinal stroma tumor  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
CAMSAP2HumanParathyroid carcinoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
CAMSAP2HumanPremature ovarian insufficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868
CAMSAP2HumanPremature ovarian insufficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10470851   PMID:12107410   PMID:12477932   PMID:14702039   PMID:15345747   PMID:15561718   PMID:15897902   PMID:16713569   PMID:19322201   PMID:19508979   PMID:20195357   PMID:21873635  
PMID:22116939   PMID:23169647   PMID:24148305   PMID:24486153   PMID:24706919   PMID:24908486   PMID:25544563   PMID:25921289   PMID:26496610   PMID:26638075   PMID:26673895   PMID:26972000  
PMID:27173435   PMID:27666745   PMID:27684187   PMID:28514442   PMID:28718761   PMID:28726242   PMID:29089450   PMID:29507755   PMID:29509190   PMID:29568061   PMID:29778605   PMID:30021884  
PMID:30344098   PMID:31024071   PMID:31527615   PMID:32084403   PMID:32206120   PMID:32238831   PMID:32908313   PMID:33782614   PMID:33845483   PMID:33916271   PMID:33961781   PMID:34048709  
PMID:34079125   PMID:34349018   PMID:35188072   PMID:35271311   PMID:35575683   PMID:35831314   PMID:36114006   PMID:36215168   PMID:36779422   PMID:36931259   PMID:37567766   PMID:37814859  
PMID:38159595  



CAMSAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381200,738,893 - 200,860,704 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1200,738,893 - 200,860,707 (+)EnsemblGRCh38hg38GRCh38
GRCh371200,708,021 - 200,829,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361198,975,309 - 199,096,455 (+)NCBINCBI36Build 36hg18NCBI36
Celera1173,831,311 - 173,953,903 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1171,875,247 - 171,996,963 (+)NCBIHuRef
CHM1_11202,131,398 - 202,252,507 (+)NCBICHM1_1
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBIT2T-CHM13v2.0
Camsap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391136,195,861 - 136,273,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1136,195,861 - 136,273,842 (-)EnsemblGRCm39 Ensembl
GRCm381136,268,123 - 136,346,117 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,268,123 - 136,346,104 (-)EnsemblGRCm38mm10GRCm38
MGSCv371138,164,700 - 138,242,681 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361138,084,534 - 138,162,515 (-)NCBIMGSCv36mm8
Celera1138,903,839 - 138,981,241 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.61NCBI
Camsap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81350,274,950 - 50,354,298 (-)NCBIGRCr8
mRatBN7.21347,723,251 - 47,802,606 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,723,121 - 47,802,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1350,331,217 - 50,410,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,619,305 - 51,698,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,886,259 - 48,965,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01353,145,712 - 53,225,349 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1353,145,712 - 53,225,349 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01358,197,543 - 58,276,697 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,309,232 - 49,388,931 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11349,323,577 - 49,402,350 (-)NCBI
Celera1348,034,991 - 48,114,872 (-)NCBICelera
Cytogenetic Map13q13NCBI
Camsap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540636,957,523 - 37,055,748 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540636,958,337 - 37,055,748 (+)NCBIChiLan1.0ChiLan1.0
CAMSAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2148,519,600 - 48,641,284 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1148,483,195 - 48,605,274 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01176,339,766 - 176,460,808 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11180,644,200 - 180,764,136 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1180,644,200 - 180,764,136 (+)Ensemblpanpan1.1panPan2
CAMSAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.172,317,986 - 2,432,421 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl72,320,220 - 2,432,603 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha72,002,197 - 2,118,572 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,963,896 - 2,080,591 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,964,323 - 2,080,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,948,044 - 2,064,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.072,050,067 - 2,166,198 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.072,080,488 - 2,197,121 (-)NCBIUU_Cfam_GSD_1.0
Camsap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934474,262,628 - 74,356,299 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,497,046 - 3,590,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,497,304 - 3,590,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMSAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,275,322 - 23,360,167 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,275,302 - 23,360,167 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21027,745,913 - 27,800,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMSAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12528,542,480 - 28,659,197 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2528,542,143 - 28,659,060 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605529,342,156 - 29,456,839 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camsap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,766,139 - 9,879,513 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,766,238 - 9,879,930 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CAMSAP2
89 total Variants

1 to 10 of 107 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
NM_203459.2(CAMSAP2):c.2225C>T (p.Thr742Ile) single nucleotide variant Malignant melanoma [RCV000064437] Chr1:200848994 [GRCh38]
Chr1:200818122 [GRCh37]
Chr1:199084745 [NCBI36]
Chr1:1q32.1
not provided
GRCh38/hg38 1q32.1(chr1:200144603-203112078)x1 copy number loss See cases [RCV000133625] Chr1:200144603..203112078 [GRCh38]
Chr1:200113731..203081206 [GRCh37]
Chr1:198380354..201347829 [NCBI36]
Chr1:1q32.1
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737)x1 copy number loss See cases [RCV000445748] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_203459.4(CAMSAP2):c.3715A>G (p.Thr1239Ala) single nucleotide variant not specified [RCV004314925] Chr1:200853387 [GRCh38]
Chr1:200822515 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_203459.4(CAMSAP2):c.4174C>T (p.Arg1392Trp) single nucleotide variant not specified [RCV004304430] Chr1:200857796 [GRCh38]
Chr1:200826924 [GRCh37]
Chr1:1q32.1
uncertain significance
1 to 10 of 107 rows

Predicted Target Of
Summary Value
Count of predictions:2135
Count of miRNA genes:753
Interacting mature miRNAs:860
Transcripts:ENST00000236925, ENST00000358823, ENST00000413307, ENST00000447701, ENST00000475326, ENST00000532732
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597225832GWAS1321906_Hheel bone mineral density QTL GWAS1321906 (human)2e-20heel bone mineral densitybone mineral density (CMO:0001226)1200738940200738941Human
597348636GWAS1444710_Hmyocardial infarction QTL GWAS1444710 (human)0.000007myocardial infarction1200846799200846800Human
597111086GWAS1207160_HThyroid preparation use measurement QTL GWAS1207160 (human)4e-10Thyroid preparation use measurement1200842637200842638Human
596968235GWAS1087754_Htelomere length, COVID-19 QTL GWAS1087754 (human)8e-09telomere length, COVID-191200754881200754882Human
597065240GWAS1161314_Htype 1 diabetes mellitus QTL GWAS1161314 (human)4e-08type 1 diabetes mellitus1200845831200845832Human
597376644GWAS1472718_Hepilepsy QTL GWAS1472718 (human)1e-08brain integrity trait (VT:0010579)1200857641200857642Human

RH92112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,826,563 - 200,826,730UniSTSGRCh37
Build 361199,093,186 - 199,093,353RGDNCBI36
Celera1173,950,634 - 173,950,801RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,993,693 - 171,993,860UniSTS
GeneMap99-GB4 RH Map1665.63UniSTS
RH101923  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,827,226 - 200,827,357UniSTSGRCh37
Build 361199,093,849 - 199,093,980RGDNCBI36
Celera1173,951,297 - 173,951,428RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,994,356 - 171,994,487UniSTS
GeneMap99-GB4 RH Map1665.11UniSTS
SHGC-81869  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,712,043 - 200,712,331UniSTSGRCh37
Build 361198,978,666 - 198,978,954RGDNCBI36
Celera1173,834,668 - 173,834,956RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,878,604 - 171,878,892UniSTS
TNG Radiation Hybrid Map198021.0UniSTS
SHGC-76143  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,712,524 - 200,712,646UniSTSGRCh37
Build 361198,979,147 - 198,979,269RGDNCBI36
Celera1173,835,149 - 173,835,271RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,879,082 - 171,879,204UniSTS
TNG Radiation Hybrid Map198021.0UniSTS
GeneMap99-GB4 RH Map1667.02UniSTS
NCBI RH Map11662.0UniSTS
SHGC-33046  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,752,439 - 200,752,588UniSTSGRCh37
Build 361199,019,062 - 199,019,211RGDNCBI36
Celera1173,875,054 - 173,875,203RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,919,490 - 171,919,639UniSTS
Stanford-G3 RH Map17742.0UniSTS
GeneMap99-GB4 RH Map1665.38UniSTS
GeneMap99-GB4 RH Map1665.11UniSTS
Whitehead-RH Map1823.5UniSTS
NCBI RH Map11673.9UniSTS
GeneMap99-G3 RH Map17698.0UniSTS
SHGC-76122  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,829,729 - 200,829,828UniSTSGRCh37
Build 361199,096,352 - 199,096,451RGDNCBI36
Celera1173,953,800 - 173,953,899RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,996,860 - 171,996,959UniSTS
GeneMap99-GB4 RH Map1665.63UniSTS
Whitehead-RH Map1823.3UniSTS
NCBI RH Map11670.6UniSTS
SHGC-76118  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371200,819,041 - 200,819,281UniSTSGRCh37
Build 361199,085,664 - 199,085,904RGDNCBI36
Celera1173,943,112 - 173,943,352RGD
Cytogenetic Map1q32.1UniSTS
HuRef1171,986,181 - 171,986,421UniSTS
GeneMap99-GB4 RH Map1665.18UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2252 4973 1726 2351 6 624 1929 465 2269 7285 6451 53 3734 1 852 1744 1617 175 1


1 to 30 of 30 rows
RefSeq Transcripts NM_001297707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA625716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB029001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF087998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL110158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL450104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA388618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H14341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 30 rows

Ensembl Acc Id: ENST00000236925   ⟹   ENSP00000236925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,739,779 - 200,860,707 (+)Ensembl
Ensembl Acc Id: ENST00000358823   ⟹   ENSP00000351684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,738,893 - 200,860,704 (+)Ensembl
Ensembl Acc Id: ENST00000413307   ⟹   ENSP00000416800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,739,779 - 200,858,119 (+)Ensembl
Ensembl Acc Id: ENST00000447701   ⟹   ENSP00000395365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,832,716 - 200,853,415 (+)Ensembl
Ensembl Acc Id: ENST00000475326   ⟹   ENSP00000434766
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,856,094 - 200,857,724 (+)Ensembl
Ensembl Acc Id: ENST00000532732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1200,832,108 - 200,832,834 (+)Ensembl
RefSeq Acc Id: NM_001297707   ⟹   NP_001284636
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
CHM1_11202,131,398 - 202,252,510 (+)NCBI
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001297708   ⟹   NP_001284637
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
CHM1_11202,131,398 - 202,252,510 (+)NCBI
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389638   ⟹   NP_001376567
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
Sequence:
RefSeq Acc Id: NM_203459   ⟹   NP_982284
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
GRCh371200,708,686 - 200,829,832 (+)RGD
Build 361198,975,309 - 199,096,455 (+)NCBI Archive
Celera1173,831,311 - 173,953,903 (+)RGD
HuRef1171,875,247 - 171,996,963 (+)ENTREZGENE
CHM1_11202,131,398 - 202,252,510 (+)NCBI
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000799   ⟹   XP_016856288
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047416200   ⟹   XP_047272156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
RefSeq Acc Id: XM_047416203   ⟹   XP_047272159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,860,704 (+)NCBI
RefSeq Acc Id: XM_054335487   ⟹   XP_054191462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
RefSeq Acc Id: XM_054335488   ⟹   XP_054191463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
RefSeq Acc Id: XM_054335489   ⟹   XP_054191464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01199,995,917 - 200,117,682 (+)NCBI
1 to 5 of 15 rows
1 to 5 of 15 rows
RefSeq Acc Id: NP_982284   ⟸   NM_203459
- Peptide Label: isoform 2
- UniProtKB: Q08AD1 (UniProtKB/Swiss-Prot),   B3KTI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284636   ⟸   NM_001297707
- Peptide Label: isoform 1
- UniProtKB: Q9UG20 (UniProtKB/Swiss-Prot),   Q96FB3 (UniProtKB/Swiss-Prot),   Q6PGN8 (UniProtKB/Swiss-Prot),   Q08AD2 (UniProtKB/Swiss-Prot),   B1APG6 (UniProtKB/Swiss-Prot),   Q9UPS4 (UniProtKB/Swiss-Prot),   Q08AD1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001284637   ⟸   NM_001297708
- Peptide Label: isoform 3
- UniProtKB: Q08AD1 (UniProtKB/Swiss-Prot),   B3KTI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016856288   ⟸   XM_017000799
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000416800   ⟸   ENST00000413307
Name Modeler Protein Id AA Range Protein Structure
AF-Q08AD1-F1-model_v2 AlphaFold Q08AD1 1-1489 view protein structure

RGD ID:6784850
Promoter ID:HG_KWN:6732
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000367344,   NM_203459,   OTTHUMT00000087034,   UC001GVL.1,   UC001GVM.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361198,974,451 - 198,975,352 (+)MPROMDB
RGD ID:6858516
Promoter ID:EPDNEW_H2423
Type:initiation region
Name:CAMSAP2_1
Description:calmodulin regulated spectrin associated protein family member2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381200,738,893 - 200,738,953EPDNEW


1 to 40 of 51 rows
Database
Acc Id
Source(s)
COSMIC CAMSAP2 COSMIC
Ensembl Genes ENSG00000118200 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000236925 ENTREZGENE
  ENST00000236925.9 UniProtKB/Swiss-Prot
  ENST00000358823 ENTREZGENE
  ENST00000358823.7 UniProtKB/Swiss-Prot
  ENST00000413307 ENTREZGENE
  ENST00000413307.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.20.360 UniProtKB/Swiss-Prot
GTEx ENSG00000118200 GTEx
HGNC ID HGNC:29188 ENTREZGENE
Human Proteome Map CAMSAP2 Human Proteome Map
InterPro CAMSAP UniProtKB/Swiss-Prot
  CAMSAP_CC1 UniProtKB/Swiss-Prot
  CAMSAP_CH UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  CKK_dom_sf UniProtKB/Swiss-Prot
  CKK_domain UniProtKB/Swiss-Prot
  PRC_barrel-like_sf UniProtKB/Swiss-Prot
KEGG Report hsa:23271 UniProtKB/Swiss-Prot
NCBI Gene 23271 ENTREZGENE
OMIM 613775 OMIM
PANTHER CALMODULIN-REGULATED SPECTRIN-ASSOCIATED PROTEIN 2 UniProtKB/Swiss-Prot
  PTHR21595 UniProtKB/Swiss-Prot
Pfam CAMSAP_CC1 UniProtKB/Swiss-Prot
  CAMSAP_CH UniProtKB/Swiss-Prot
  CAMSAP_CKK UniProtKB/Swiss-Prot
PharmGKB PA142672206 PharmGKB
PROSITE CKK UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
SMART CAMSAP_CKK UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot
  SSF50346 UniProtKB/Swiss-Prot
UniProt B1APG6 ENTREZGENE
  B3KTI4 ENTREZGENE, UniProtKB/TrEMBL
  CAMP2_HUMAN UniProtKB/Swiss-Prot
  H0Y4Z1_HUMAN UniProtKB/TrEMBL
  H0YE13_HUMAN UniProtKB/TrEMBL
  Q08AD1 ENTREZGENE
1 to 40 of 51 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 CAMSAP2  calmodulin regulated spectrin associated protein family member 2    calmodulin regulated spectrin-associated protein family, member 2  Symbol and/or name change 5135510 APPROVED
2011-09-01 CAMSAP2  calmodulin regulated spectrin-associated protein family, member 2  CAMSAP1L1  calmodulin regulated spectrin-associated protein 1-like 1  Symbol and/or name change 5135510 APPROVED