GWAS1472718_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1472718_H (epilepsy QTL GWAS1472718 (human)) Homo sapiens

Symbol: GWAS1472718_H
Name: epilepsy QTL GWAS1472718 (human)
RGD ID: 597376644
Trait: brain integrity trait   (VT:0010579)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381200,857,641 - 200,857,642RGD_MAPPER_PIPELINEGRCh38
GRCh371200,826,769 - 200,826,770RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1472718_HHumanepilepsy  IAGPrs2292096405850206 GWAS_CATALOGPMID:22116939

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1472718_HHumanSeizure  IAGPrs2292096405850206 GWAS_CATALOGPMID:22116939

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1472718_HHumanbrain integrity trait  IAGPrs2292096405850206 GWAS_CATALOGPMID:22116939

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1472718_HHumanepilepsy  IAGPrs2292096405850206 GWAS_CATALOGPMID:22116939

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604039CAMSAP2calmodulin regulated spectrin associated protein family member 21200738893200860704Human


Peak: (rs2292096)
Human AssemblyChrPosition (strand)Source
GRCh381200,857,641 - 200,857,642RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597376644GWAS1472718_Hepilepsy QTL GWAS1472718 (human)1e-08brain integrity trait (VT:0010579)1200857641200857642Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1472718_H GCST001329 Epilepsy 504 Han Chinese ancestry cases, 2,947 Han Chinese ancestry controls ? NR 1E-8 8 rs2292096 1.59 epilepsy (EFO:0000474)
 PMID:22116939
Database
Acc Id
Source(s)
GWAS Catalog GCST001329 GWAS Catalog

Note Type Note Reference