Advanced Search (OLGA)

Gene: Cul9 (cullin 9) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Cul9

Name:

cullin 9

RGD ID:

1562008

Description:

Predicted to enable transferase activity; ubiquitin protein ligase binding activity; and zinc ion binding activity. Predicted to be involved in microtubule cytoskeleton organization; protein ubiquitination; and regulation of mitotic nuclear division. Predicted to be located in cytosol. Predicted to be part of cullin-RING ubiquitin ligase complex. Orthologous to human CUL9 (cullin 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cullin-9; LOC316228; p53-associated parkin-like cytoplasmic protein; Parc; RGD1562008; similar to p53-associated parkin-like cytoplasmic protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CUL9 (cullin 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cul9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cul9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CUL9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CUL9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cul9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CUL9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CUL9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cul9 (cullin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CUL9 (cullin 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cul9 (cullin 9)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cul9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,933,699 - 21,977,145 (+)	NCBI		GRCr8
mRatBN7.2	9	14,435,948 - 14,479,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,436,111 - 14,479,548 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,019,900 - 23,063,207 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,082,972 - 28,126,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,383,281 - 26,426,587 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,747,449 - 16,844,033 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,747,662 - 16,844,057 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,652,541 - 15,745,381 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,800,224 - 9,863,348 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,185,789 - 12,227,563 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cul9	Rat	imperforate anus		ISO	CUL9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Imperforate anus	ClinVar	PMID:25741868
Cul9	Rat	infantile Refsum disease		ISO	CUL9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: ADRENOLEUKODYSTROPHY and AUTOSOMAL NEONATAL	ClinVar	PMID:19877282 more ...
Cul9	Rat	Zellweger syndrome		ISO	CUL9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorders and Zellweger syndrome spectrum	ClinVar	PMID:19877282 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cul9	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Cul9 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of CUL9 mRNA	CTD	PMID:22206623
Cul9	Rat	17beta-estradiol	increases expression	ISO	Cul9 (Mus musculus)	6480464	Estradiol results in increased expression of CUL9 mRNA	CTD	PMID:39298647
Cul9	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of CUL9 mRNA	CTD	PMID:21215274
Cul9	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of CUL9 mRNA	CTD	PMID:33387578
Cul9	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CUL9 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:28628672
Cul9	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:28628672
Cul9	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:36041667
Cul9	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	Cul9 (Mus musculus)	6480464	bisphenol S results in decreased methylation of CUL9 exon and bisphenol S results in decreased methylation of CUL9 promoter	CTD	PMID:33297965
Cul9	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of CUL9 mRNA	CTD	PMID:30047161
Cul9	Rat	acrylamide	decreases expression	ISO	CUL9 (Homo sapiens)	6480464	Acrylamide results in decreased expression of CUL9 mRNA	CTD	PMID:32763439
Cul9	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of CUL9 mRNA	CTD	PMID:30047161
Cul9	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of CUL9 mRNA	CTD	PMID:30779732
Cul9	Rat	arsenite(3-)	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to CUL9 mRNA]	CTD	PMID:32406909
Cul9	Rat	beryllium sulfate	increases expression	ISO	CUL9 (Homo sapiens)	6480464	beryllium sulfate results in increased expression of CUL9 mRNA	CTD	PMID:35679967
Cul9	Rat	beryllium sulfate	decreases expression	ISO	CUL9 (Homo sapiens)	6480464	beryllium sulfate results in decreased expression of CUL9 mRNA	CTD	PMID:35679967
Cul9	Rat	beta-lapachone	decreases expression	ISO	CUL9 (Homo sapiens)	6480464	beta-lapachone results in decreased expression of CUL9 mRNA	CTD	PMID:38218311
Cul9	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	Cul9 (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased expression of CUL9 mRNA	CTD	PMID:34319233
Cul9	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CUL9 mRNA	CTD	PMID:25181051
Cul9	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:36041667
Cul9	Rat	bisphenol A	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of CUL9 gene	CTD	PMID:31601247
Cul9	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CUL9 mRNA	CTD	PMID:30816183
Cul9	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of CUL9 gene	CTD	PMID:28505145
Cul9	Rat	bisphenol F	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CUL9 mRNA	CTD	PMID:28628672
Cul9	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:36041667
Cul9	Rat	bisphenol F	decreases expression	ISO	Cul9 (Mus musculus)	6480464	bisphenol F results in decreased expression of CUL9 mRNA	CTD	PMID:38685157
Cul9	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of CUL9 mRNA	CTD	PMID:33453195
Cul9	Rat	carbon nanotube	decreases expression	ISO	Cul9 (Mus musculus)	6480464	Nanotubes and Carbon results in decreased expression of CUL9 mRNA	CTD	PMID:25554681
Cul9	Rat	CGP 52608	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to CUL9 gene]	CTD	PMID:28238834
Cul9	Rat	cisplatin	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of CUL9 mRNA	CTD	PMID:27392435
Cul9	Rat	dexamethasone	decreases expression	ISO	CUL9 (Homo sapiens)	6480464	Dexamethasone results in decreased expression of CUL9 mRNA	CTD	PMID:25047013
Cul9	Rat	dexamethasone	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CUL9 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:28628672
Cul9	Rat	Dibutyl phosphate	affects expression	ISO	CUL9 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of CUL9 mRNA	CTD	PMID:37042841
Cul9	Rat	doxorubicin	decreases expression	ISO	CUL9 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of CUL9 mRNA	CTD	PMID:29803840
Cul9	Rat	ethanol	affects splicing	ISO	Cul9 (Mus musculus)	6480464	Ethanol affects the splicing of CUL9 mRNA	CTD	PMID:30319688
Cul9	Rat	ethanol	increases expression	ISO	Cul9 (Mus musculus)	6480464	Ethanol results in increased expression of CUL9 mRNA	CTD	PMID:30319688
Cul9	Rat	ethyl methanesulfonate	increases expression	ISO	CUL9 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of CUL9 mRNA	CTD	PMID:23649840
Cul9	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of CUL9 mRNA	CTD	PMID:30307764
Cul9	Rat	formaldehyde	increases expression	ISO	CUL9 (Homo sapiens)	6480464	Formaldehyde results in increased expression of CUL9 mRNA	CTD	PMID:23649840
Cul9	Rat	FR900359	decreases phosphorylation	ISO	CUL9 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of CUL9 protein	CTD	PMID:37730182
Cul9	Rat	fulvestrant	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of CUL9 gene	CTD	PMID:31601247
Cul9	Rat	indometacin	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of CUL9 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of CUL9 mRNA	CTD	PMID:28628672
Cul9	Rat	methamphetamine	increases expression	ISO	Cul9 (Mus musculus)	6480464	Methamphetamine results in increased expression of CUL9 mRNA	CTD	PMID:26307267
Cul9	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of CUL9 mRNA	CTD	PMID:30047161
Cul9	Rat	methyl methanesulfonate	increases expression	ISO	CUL9 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of CUL9 mRNA	CTD	PMID:23649840
Cul9	Rat	ozone	multiple interactions	ISO	Cul9 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of Ozone] which results in decreased expression of CUL9 mRNA	CTD	PMID:27106289 and PMID:34911549
Cul9	Rat	ozone	multiple interactions	ISO	CUL9 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of CUL9 mRNA	CTD	PMID:35430440
Cul9	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of CUL9 mRNA	CTD	PMID:32680482
Cul9	Rat	propiconazole	decreases expression	EXP		6480464	propiconazole results in decreased expression of CUL9 mRNA	CTD	PMID:30047161
Cul9	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of CUL9 mRNA	CTD	PMID:30047161
Cul9	Rat	temozolomide	increases expression	ISO	CUL9 (Homo sapiens)	6480464	Temozolomide results in increased expression of CUL9 mRNA	CTD	PMID:31758290
Cul9	Rat	tetrachloromethane	decreases expression	ISO	Cul9 (Mus musculus)	6480464	Carbon Tetrachloride results in decreased expression of CUL9 mRNA	CTD	PMID:25270620
Cul9	Rat	tetraphene	increases expression	ISO	Cul9 (Mus musculus)	6480464	benz(a)anthracene results in increased expression of CUL9 mRNA	CTD	PMID:26377693
Cul9	Rat	titanium dioxide	decreases expression	ISO	Cul9 (Mus musculus)	6480464	titanium dioxide results in decreased expression of CUL9 mRNA	CTD	PMID:23557971
Cul9	Rat	titanium dioxide	decreases methylation	ISO	Cul9 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of CUL9 gene and titanium dioxide results in decreased methylation of CUL9 promoter	CTD	PMID:35295148

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cul9	Rat	microtubule cytoskeleton organization	involved_in	ISO	CUL9 (Homo sapiens)	1624291	PMID:24793696	RGD	PMID:24793696
Cul9	Rat	microtubule cytoskeleton organization	involved_in	IEA	UniProtKB:Q8IWT3 and ensembl:ENSP00000252050	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cul9	Rat	protein ubiquitination	involved_in	ISO	CUL9 (Homo sapiens)	1624291	PMID:24793696	RGD	PMID:24793696
Cul9	Rat	protein ubiquitination	involved_in	IEA	UniProtKB:Q8IWT3 and ensembl:ENSP00000252050	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cul9	Rat	regulation of mitotic nuclear division	involved_in	ISO	CUL9 (Homo sapiens)	1624291	PMID:24793696	RGD	PMID:24793696
Cul9	Rat	regulation of mitotic nuclear division	involved_in	IEA	UniProtKB:Q8IWT3 and ensembl:ENSP00000252050	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cul9	Rat	ubiquitin-dependent protein catabolic process	involved_in	IEA	InterPro:IPR016157	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cul9	Rat	cullin-RING ubiquitin ligase complex	part_of	ISO	CUL9 (Homo sapiens)	1624291	PMID:24793696	RGD	PMID:24793696
Cul9	Rat	cullin-RING ubiquitin ligase complex	part_of	IEA	UniProtKB:Q8IWT3 and ensembl:ENSP00000252050	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cul9	Rat	cullin-RING ubiquitin ligase complex	part_of	IEA	InterPro:IPR016157	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cul9	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cul9	Rat	cytosol	located_in	ISO	CUL9 (Homo sapiens) and UniProtKB:Q8IWT3-1	1624291		RGD	GO_REF:0000052
Cul9	Rat	cytosol	located_in	IEA	UniProtKB:Q8IWT3 and ensembl:ENSP00000252050	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cul9	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cul9	Rat	protein binding	enables	ISO	CUL9 (Homo sapiens)	1624291	UniProtKB:P04637 more ...	RGD	PMID:18230339 more ...
Cul9	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cul9	Rat	ubiquitin protein ligase binding	enables	IEA	InterPro:IPR016157	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Cul9	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cul9	Rat	zinc ion binding	enables	IEA	InterPro:IPR002867 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:24793696

Cul9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	21,933,699 - 21,977,145 (+)	NCBI		GRCr8
mRatBN7.2	9	14,435,948 - 14,479,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,436,111 - 14,479,548 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,019,900 - 23,063,207 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,082,972 - 28,126,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,383,281 - 26,426,587 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	16,747,449 - 16,844,033 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,747,662 - 16,844,057 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	15,652,541 - 15,745,381 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	9,800,224 - 9,863,348 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	12,185,789 - 12,227,563 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

CUL9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,182,196 - 43,224,587 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,182,184 - 43,224,587 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,149,934 - 43,192,325 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,257,900 - 43,300,303 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	44,702,143 - 44,744,534 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	42,866,612 - 42,909,021 (+)	NCBI		HuRef
CHM1_1	6	43,152,810 - 43,195,260 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,010,969 - 43,053,382 (+)	NCBI		T2T-CHM13v2.0

Cul9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,811,535 - 46,857,314 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,811,498 - 46,857,314 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,500,609 - 46,546,388 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,500,572 - 46,546,388 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,637,554 - 46,683,337 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,963,794 - 46,009,577 (-)	NCBI		MGSCv36	mm8
Celera	17	49,936,322 - 49,982,386 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.9	NCBI

Cul9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,109,889 - 9,147,526 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,109,997 - 9,145,181 (+)	NCBI	ChiLan1.0	ChiLan1.0

CUL9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	57,682,085 - 57,724,502 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	53,551,886 - 53,594,307 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	42,773,955 - 42,816,361 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,067,392 - 44,110,122 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,067,389 - 44,110,122 (+)	Ensembl	panpan1.1		panPan2

CUL9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	11,674,408 - 11,714,578 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	11,676,271 - 11,714,578 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	11,701,389 - 11,741,555 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,156,979 - 12,196,916 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,157,064 - 12,196,913 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	11,684,308 - 11,724,237 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	11,768,727 - 11,808,627 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	11,863,521 - 11,903,458 (+)	NCBI		UU_Cfam_GSD_1.0

Cul9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,180,814 - 47,216,985 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,743,202 - 16,779,298 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,743,221 - 16,779,293 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CUL9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,224,332 - 38,263,425 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,224,023 - 38,263,429 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	43,724,604 - 43,763,789 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUL9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,928,167 - 28,982,924 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,927,967 - 28,982,483 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,241,772 - 43,286,520 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cul9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,335,626 - 16,368,926 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,335,466 - 16,371,313 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cul9
126 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 3p21.31-14.3(chr3:49461000-55314500)x1	copy number loss	See cases [RCV000051511]	Chr3:49461000..55314500 [GRCh38] Chr3:49498433..55348528 [GRCh37] Chr3:49473437..55323568 [NCBI36] Chr3:3p21.31-14.3	pathogenic
NM_000839.3(GRM2):c.1297C>T (p.Arg433Cys)	single nucleotide variant	Malignant melanoma [RCV000066134]	Chr3:51715070 [GRCh38] Chr3:51749086 [GRCh37] Chr3:51724126 [NCBI36] Chr3:3p21.2	not provided
GRCh38/hg38 3p21.2-14.3(chr3:51394434-55064449)x1	copy number loss	See cases [RCV000143631]	Chr3:51394434..55064449 [GRCh38] Chr3:51431865..55098476 [GRCh37] Chr3:51406905..55073516 [NCBI36] Chr3:3p21.2-14.3	likely pathogenic
NM_000839.5(GRM2):c.1354C>T (p.Arg452Cys)	single nucleotide variant	not specified [RCV004315279]	Chr3:51715127 [GRCh38] Chr3:51749143 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1904G>A (p.Arg635Gln)	single nucleotide variant	not specified [RCV004307960]	Chr3:51715677 [GRCh38] Chr3:51749693 [GRCh37] Chr3:3p21.2	uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)	copy number gain	See cases [RCV000512358]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3	copy number gain	See cases [RCV000511055]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3	copy number gain	not provided [RCV000742138]	Chr3:61495..197838262 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3	copy number gain	not provided [RCV000742133]	Chr3:60174..197948027 [GRCh37] Chr3:3p26.3-q29	pathogenic
NM_000839.5(GRM2):c.810C>T (p.Thr270=)	single nucleotide variant	not provided [RCV000884704]	Chr3:51712832 [GRCh38] Chr3:51746848 [GRCh37] Chr3:3p21.2	benign
NM_000839.5(GRM2):c.2595G>A (p.Val865=)	single nucleotide variant	not provided [RCV000969012]	Chr3:51718088 [GRCh38] Chr3:51752104 [GRCh37] Chr3:3p21.2	benign
NM_000839.5(GRM2):c.369C>T (p.Asp123=)	single nucleotide variant	not provided [RCV000924029]	Chr3:51709352 [GRCh38] Chr3:51743368 [GRCh37] Chr3:3p21.2	likely benign
NM_000839.5(GRM2):c.1316A>G (p.Asn439Ser)	single nucleotide variant	not provided [RCV000897454]	Chr3:51715089 [GRCh38] Chr3:51749105 [GRCh37] Chr3:3p21.2	benign
NM_000839.5(GRM2):c.2074C>T (p.Leu692Phe)	single nucleotide variant	not provided [RCV000896986]	Chr3:51715847 [GRCh38] Chr3:51749863 [GRCh37] Chr3:3p21.2	likely benign
GRCh37/hg19 3p21.31-21.1(chr3:45153770-53878616)	copy number gain	not provided [RCV000767704]	Chr3:45153770..53878616 [GRCh37] Chr3:3p21.31-21.1	pathogenic
NM_000839.5(GRM2):c.2472C>T (p.Asn824=)	single nucleotide variant	not provided [RCV000962029]	Chr3:51717744 [GRCh38] Chr3:51751760 [GRCh37] Chr3:3p21.2	benign
GRCh37/hg19 3p21.2-21.1(chr3:51247306-53069942)x3	copy number gain	not provided [RCV001005434]	Chr3:51247306..53069942 [GRCh37] Chr3:3p21.2-21.1	uncertain significance
NM_000839.5(GRM2):c.420T>C (p.Ile140=)	single nucleotide variant	not provided [RCV000931551]	Chr3:51709403 [GRCh38] Chr3:51743419 [GRCh37] Chr3:3p21.2	likely benign
NM_000839.5(GRM2):c.2001T>C (p.Gly667=)	single nucleotide variant	not provided [RCV000922644]	Chr3:51715774 [GRCh38] Chr3:51749790 [GRCh37] Chr3:3p21.2	likely benign
NM_000839.5(GRM2):c.888T>C (p.Gly296=)	single nucleotide variant	not provided [RCV000937079]	Chr3:51712910 [GRCh38] Chr3:51746926 [GRCh37] Chr3:3p21.2	likely benign
NM_000839.5(GRM2):c.743C>T (p.Ala248Val)	single nucleotide variant	not provided [RCV000913640]	Chr3:51712765 [GRCh38] Chr3:51746781 [GRCh37] Chr3:3p21.2	likely benign
NM_000839.5(GRM2):c.1495C>T (p.Arg499Cys)	single nucleotide variant	not specified [RCV004117344]	Chr3:51715268 [GRCh38] Chr3:51749284 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.374C>A (p.Ser125Tyr)	single nucleotide variant	not specified [RCV004164783]	Chr3:51709357 [GRCh38] Chr3:51743373 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1346G>A (p.Gly449Asp)	single nucleotide variant	not specified [RCV004224299]	Chr3:51715119 [GRCh38] Chr3:51749135 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.130G>A (p.Gly44Ser)	single nucleotide variant	not specified [RCV004093050]	Chr3:51709113 [GRCh38] Chr3:51743129 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1394G>A (p.Arg465His)	single nucleotide variant	not specified [RCV004182294]	Chr3:51715167 [GRCh38] Chr3:51749183 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1066A>G (p.Ser356Gly)	single nucleotide variant	not specified [RCV004216369]	Chr3:51713088 [GRCh38] Chr3:51747104 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1037G>A (p.Arg346His)	single nucleotide variant	not specified [RCV004189944]	Chr3:51713059 [GRCh38] Chr3:51747075 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2363G>A (p.Arg788Gln)	single nucleotide variant	not specified [RCV004203170]	Chr3:51716136 [GRCh38] Chr3:51750152 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.842C>T (p.Ala281Val)	single nucleotide variant	not specified [RCV004112933]	Chr3:51712864 [GRCh38] Chr3:51746880 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.975T>A (p.Ser325Arg)	single nucleotide variant	not specified [RCV004185339]	Chr3:51712997 [GRCh38] Chr3:51747013 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1709G>A (p.Gly570Glu)	single nucleotide variant	not specified [RCV004119802]	Chr3:51715482 [GRCh38] Chr3:51749498 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1399C>T (p.Arg467Cys)	single nucleotide variant	not specified [RCV004206099]	Chr3:51715172 [GRCh38] Chr3:51749188 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.133G>A (p.Gly45Ser)	single nucleotide variant	not specified [RCV004219021]	Chr3:51709116 [GRCh38] Chr3:51743132 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2138G>A (p.Arg713Gln)	single nucleotide variant	not specified [RCV004128247]	Chr3:51715911 [GRCh38] Chr3:51749927 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2460G>T (p.Gln820His)	single nucleotide variant	not specified [RCV004167420]	Chr3:51717732 [GRCh38] Chr3:51751748 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1886C>T (p.Thr629Met)	single nucleotide variant	not specified [RCV004229137]	Chr3:51715659 [GRCh38] Chr3:51749675 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1469C>T (p.Pro490Leu)	single nucleotide variant	not specified [RCV004203517]	Chr3:51715242 [GRCh38] Chr3:51749258 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2491C>A (p.Pro831Thr)	single nucleotide variant	not specified [RCV004143125]	Chr3:51717763 [GRCh38] Chr3:51751779 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1087G>A (p.Ala363Thr)	single nucleotide variant	not specified [RCV004181967]	Chr3:51713109 [GRCh38] Chr3:51747125 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.97G>A (p.Val33Met)	single nucleotide variant	not specified [RCV004212439]	Chr3:51709080 [GRCh38] Chr3:51743096 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.603C>G (p.Phe201Leu)	single nucleotide variant	not specified [RCV004175686]	Chr3:51712625 [GRCh38] Chr3:51746641 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1612G>A (p.Ala538Thr)	single nucleotide variant	not specified [RCV004075350]	Chr3:51715385 [GRCh38] Chr3:51749401 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2171G>A (p.Arg724His)	single nucleotide variant	not specified [RCV004091285]	Chr3:51715944 [GRCh38] Chr3:51749960 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1592G>A (p.Arg531Gln)	single nucleotide variant	not specified [RCV004075475]	Chr3:51715365 [GRCh38] Chr3:51749381 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2432C>T (p.Ala811Val)	single nucleotide variant	not specified [RCV004261481]	Chr3:51717704 [GRCh38] Chr3:51751720 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.560C>T (p.Pro187Leu)	single nucleotide variant	not specified [RCV004271260]	Chr3:51712582 [GRCh38] Chr3:51746598 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.589G>C (p.Glu197Gln)	single nucleotide variant	not specified [RCV004269474]	Chr3:51712611 [GRCh38] Chr3:51746627 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.599G>A (p.Arg200His)	single nucleotide variant	not specified [RCV004345566]	Chr3:51712621 [GRCh38] Chr3:51746637 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1762G>A (p.Val588Ile)	single nucleotide variant	not specified [RCV004346341]	Chr3:51715535 [GRCh38] Chr3:51749551 [GRCh37] Chr3:3p21.2	uncertain significance
GRCh37/hg19 3p21.2-14.2(chr3:51149374-59265315)x1	copy number loss	not specified [RCV003986409]	Chr3:51149374..59265315 [GRCh37] Chr3:3p21.2-14.2	pathogenic
NM_000839.5(GRM2):c.1994G>A (p.Arg665Gln)	single nucleotide variant	not specified [RCV004396030]	Chr3:51715767 [GRCh38] Chr3:51749783 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2228C>T (p.Thr743Met)	single nucleotide variant	not specified [RCV004396032]	Chr3:51716001 [GRCh38] Chr3:51750017 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1907G>A (p.Arg636His)	single nucleotide variant	not specified [RCV004396029]	Chr3:51715680 [GRCh38] Chr3:51749696 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2441T>C (p.Leu814Pro)	single nucleotide variant	not specified [RCV004396033]	Chr3:51717713 [GRCh38] Chr3:51751729 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2597A>G (p.Asp866Gly)	single nucleotide variant	not specified [RCV004396035]	Chr3:51718090 [GRCh38] Chr3:51752106 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1064G>A (p.Cys355Tyr)	single nucleotide variant	not specified [RCV004396026]	Chr3:51713086 [GRCh38] Chr3:51747102 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.736A>G (p.Ser246Gly)	single nucleotide variant	not specified [RCV004396038]	Chr3:51712758 [GRCh38] Chr3:51746774 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1400G>A (p.Arg467His)	single nucleotide variant	not specified [RCV004396028]	Chr3:51715173 [GRCh38] Chr3:51749189 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1289C>T (p.Ala430Val)	single nucleotide variant	not specified [RCV004396027]	Chr3:51715062 [GRCh38] Chr3:51749078 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2080G>A (p.Val694Met)	single nucleotide variant	not specified [RCV004396031]	Chr3:51715853 [GRCh38] Chr3:51749869 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2485C>T (p.Arg829Trp)	single nucleotide variant	not specified [RCV004396034]	Chr3:51717757 [GRCh38] Chr3:51751773 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.430T>G (p.Tyr144Asp)	single nucleotide variant	not specified [RCV004396036]	Chr3:51709413 [GRCh38] Chr3:51743429 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2141G>A (p.Arg714Gln)	single nucleotide variant	not specified [RCV004634892]	Chr3:51715914 [GRCh38] Chr3:51749930 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1073G>T (p.Arg358Leu)	single nucleotide variant	not specified [RCV004624053]	Chr3:51713095 [GRCh38] Chr3:51747111 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2158C>T (p.Arg720Cys)	single nucleotide variant	not specified [RCV004624054]	Chr3:51715931 [GRCh38] Chr3:51749947 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.811C>T (p.Arg271Cys)	single nucleotide variant	not specified [RCV004624055]	Chr3:51712833 [GRCh38] Chr3:51746849 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2398C>T (p.Leu800Phe)	single nucleotide variant	not specified [RCV004634891]	Chr3:51717670 [GRCh38] Chr3:51751686 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.49G>A (p.Val17Met)	single nucleotide variant	not specified [RCV004634890]	Chr3:51709032 [GRCh38] Chr3:51743048 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.923A>T (p.Glu308Val)	single nucleotide variant	not specified [RCV004634893]	Chr3:51712945 [GRCh38] Chr3:51746961 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.643G>A (p.Asp215Asn)	single nucleotide variant	not specified [RCV004924773]	Chr3:51712665 [GRCh38] Chr3:51746681 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2006A>C (p.Gln669Pro)	single nucleotide variant	not specified [RCV004928402]	Chr3:51715779 [GRCh38] Chr3:51749795 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.817G>A (p.Glu273Lys)	single nucleotide variant	not specified [RCV004928403]	Chr3:51712839 [GRCh38] Chr3:51746855 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2080G>T (p.Val694Leu)	single nucleotide variant	not specified [RCV004928404]	Chr3:51715853 [GRCh38] Chr3:51749869 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1438C>G (p.Leu480Val)	single nucleotide variant	not specified [RCV004928405]	Chr3:51715211 [GRCh38] Chr3:51749227 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1684C>T (p.Arg562Cys)	single nucleotide variant	not specified [RCV004924774]	Chr3:51715457 [GRCh38] Chr3:51749473 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.781C>G (p.Pro261Ala)	single nucleotide variant	not specified [RCV004924776]	Chr3:51712803 [GRCh38] Chr3:51746819 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1727G>C (p.Cys576Ser)	single nucleotide variant	not specified [RCV004924777]	Chr3:51715500 [GRCh38] Chr3:51749516 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.289C>T (p.His97Tyr)	single nucleotide variant	not specified [RCV004928401]	Chr3:51709272 [GRCh38] Chr3:51743288 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1928T>C (p.Phe643Ser)	single nucleotide variant	not specified [RCV004928406]	Chr3:51715701 [GRCh38] Chr3:51749717 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.1189C>T (p.Arg397Cys)	single nucleotide variant	not specified [RCV004924775]	Chr3:51713211 [GRCh38] Chr3:51747227 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.2029G>A (p.Ala677Thr)	single nucleotide variant	not specified [RCV004928399]	Chr3:51715802 [GRCh38] Chr3:51749818 [GRCh37] Chr3:3p21.2	uncertain significance
NM_000839.5(GRM2):c.824C>T (p.Ala275Val)	single nucleotide variant	not specified [RCV004928400]	Chr3:51712846 [GRCh38] Chr3:51746862 [GRCh37] Chr3:3p21.2	uncertain significance

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
9	16751626	16751627	C	T	snv	WKY/NCrl (2019), WKY/NCrl (RGD)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	63
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000028786
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat

BE113130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,470,606 - 14,470,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,835,092 - 16,835,251	NCBI	Rnor6.0
Rnor_5.0	9	15,736,436 - 15,736,595	UniSTS	Rnor5.0
RGSC_v3.4	9	9,854,235 - 9,854,394	UniSTS	RGSC3.4
Celera	9	12,218,624 - 12,218,783	UniSTS
RH 3.4 Map	9	59.4	UniSTS
Cytogenetic Map	9	q12	UniSTS

BF413122

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RGSC_v3.4	9	9,826,042 - 9,826,182	UniSTS	RGSC3.4
Celera	9	12,209,520 - 12,209,660	UniSTS
RH 3.4 Map	9	58.9	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH135253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	14,437,626 - 14,437,807 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,749,119 - 16,749,299	NCBI	Rnor6.0
Rnor_5.0	9	15,654,071 - 15,654,251	UniSTS	Rnor5.0
RGSC_v3.4	9	9,799,533 - 9,799,713	UniSTS	RGSC3.4
Celera	9	12,185,128 - 12,185,308	UniSTS
RH 3.4 Map	9	55.0	UniSTS
Cytogenetic Map	9	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001191582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010054591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_594281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028786 ⟹ ENSRNOP00000028786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	16,749,809 - 16,843,910 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080815 ⟹ ENSRNOP00000073679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	14,436,111 - 14,479,548 (+)	Ensembl
Rnor_6.0 Ensembl	9	16,747,662 - 16,844,057 (+)	Ensembl

RefSeq Acc Id:

NM_001191582 ⟹ NP_001178511

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,803 - 21,977,145 (+)	NCBI
mRatBN7.2	9	14,436,199 - 14,479,547 (+)	NCBI
Rnor_6.0	9	16,749,809 - 16,844,033 (+)	NCBI
Rnor_5.0	9	15,652,541 - 15,745,381 (+)	NCBI
Celera	9	12,185,789 - 12,227,563 (+)	NCBI

Sequence:

show sequence

ATGGTAGGAGAACAGCGAGCAGGGGACCTTATGGTACCCTTGGGGCCTCGGCTGCAGGCATACCCTGAAGAACTCATTCGGCAGAGACCTGGACATGACGGCCATCCTGAATACCTGATCCGTTGGCG
TGTCCTCAAGTGTAGCGAAGAGGGCAAAGTGAGCTTAGAGGAGGAGAAGACAGAGTACCTCCTCATGTGGCTGTCAGCCCCAGAGGTCTATGCCAACTGCCCCATGCTACTTCGGGAACGATCAGTGT
CTAAAGGCCCACAGTACGAACCCACCGGAGAGGTGGGGAGCTTCCCACGAGACCCAGGAGGCCTGGACGAGTTGGCAATGGCAGAGATGGAGGACGATGTGCGGGCGCTGGTGCGCAGGGCTGCCAGG
CAGCTGGCAGAAGGTGGGGCCTCCAACCTGACGGTTGCTGTGCTTCATACCATCCACGTGCTCAGTGCCTATGCCAGCATTGGGCCTCTCACCGGGGTCTTCAGGGAGACAGGAGCCCTGGATCTGCT
AATGCACATGCTGTGCAGTCCGGAGCCTCAGATCCGTCGGAGTGCAGGCAAGATGCTACAGGCTCTGGCAGCCCATGATGCTGGGAGCCGGGCTCACGTCCTTCTGTCACTGAGCCAACATGAGGGCA
TCGAGCAACACATGGATTTTGACAGCCGCTACACTTTACTGGAGCTGTTCGCAGAGACCACGTCCACGGAGGAGCACTGCATGGCCTTGGAGGGCATCCACCTTCCTCAGCTCCCTGGGAAGCTGCTC
TTCTCCCTGGTGAAACGCTACCTATGTGTCACGTCCCTGCTGGATCAGCTGAATAACAGCCCAGAGTCAGGAGCTGGAGACCAGAGCTCTCCGTGTCTCCCAAAGGAGAAGAGTCGGGGACAGCGGGA
GCTGGAGTTCAGTATGGCGGTGGGCAACCTCATTTCAGAGCTGGTGCGGAGCATGGGCTGGGCGCGGAACCTCAGTGAGCAGGGCGCCTTGCCGCCCCGGCCTTCCCGGTCCATCTTCCAGCCGTGCC
TCTCAGGCCCTCCACTGCTGCTGCCCACCATCGTCACTACGCCCAGGAAGCCAGGACGGGCCTTCCGCGGCCGTTCTGAATTTTCCAGCCGCAGTGGTTACGGTGAATATGTTCAGCAGACGGTGCAG
CCCGGCATGCGCGTTCGCATCCTGGATGACTACGAAGAGATCAGTGCTGGGGACGAGGGCGAGTTCCAGCAGAGCAACAATGGCGTGCCTCCTGTGCAGGTCTTCTGGCAGTCAACCGGCCGCACCTA
CTGGGTCCACTGGCACATGCTAGAGATCCTGGGGCCTGAGGAAGCCACTAGGGAGCCAGCATCAGCAGCTGTGGAGAAGGGAGCAGGGGCAACTGCCCTGGGCACAGCGTGTCCCTCCTGGGACAGGA
AGCCAGCGCATGGCCTCTACTCACTACCGTATCTACAGCCCGAGTCCCAGAAGAGCGAGGAGCCAGGGTACCTGACCCAGGGAGAGTGGTGGGAGCTACTTTTCTTCATCAAGAAGTTGGACTTGTGT
GAGCAGCAGCCAATTTTCCAGAATCTGCATGAGAAACTGGATAAGGAGGCCGTGGGAGAAAAGACTCTGGGAGAGATCTCTGTGCCCATAGAGATGGCTGAGGGTGTGCTGCAGGTTCTCAGTAACCG
CTTTGAGGGCAGCAACCTCTGTGACCTGCTCAACTCCCACATCTACACCAAGTACGGACGGCTGCCCAAGGAACCAGGGCGCTTACCGCCTTCACGGGGTCACTCCTGTACCTCCGAGCCAGAGGAGG
GGTCGGAGTCAGCCGCCAGCTTCTCAGAGAAGGAAGAGTCCCCAAAGGCAGAGGCGGAGCCCGCAGGCGCAAAGCCGGAGTCCCCCAAAGCACAGAGCGACTCCCAGCTGTTCAATCAGCTTCTGGTG
ACTGAGGGGATGGCTCTGGCCCCTGAAACACAGGCGGCAGCTACTGAAATGGCCAGAACCTTGCGGGGTCCCGGTCCACGCAGCTCCCTGGATCAGCATGTGGCAGCCGTCTTAGCCACTGTGCAGAT
CTCCAGCCTGGATACAAACCTGCAGCTTTCAGGGCTCGGTGCCCTCTCCCAGGCGGTGGAGGAGGTCACTGAGCGGGACCACCCTCTGGTCCGTCCTGACAGATCCTTGAGAGAGAAGCTCGTGAAGA
CCCTGGTGGATTTGCTGACCAACCAGGTGGGAGAGAAGATGGTGGTGGTGCTGGCCCTGCGCCTCCTCTACCTGCTCATGACCAAGCATGAATGGCGTCCGCTCTTTGCCAGGGAGGGTGGCATCTAC
GCTGTGCTGATCTGCATGCAAGAATACAAGACATCTGTCTTGGTGCAGCAGGCGGGACTGGCAGCGCTAAAGATGCTAGCCATTGCTAATTCCTCCGAGGTGCCCACTTTTGTCACCGGCCGAGATTC
CATCCAGCCTCTGTTTGATACCCAGATGACCAGAGAGATCTTTGCCAGCATTGACTCTGCCACACGTCCAGGCTCTGAGAGCTTGCTCCTCAGTGTACCCGCAGCCGTGGTCCTGATGCTGAATACCG
AGGGGTGCTCCTCTGCAGTGAGAAATGGCCTGCTGCTACTCAACCTGCTTCTGTGTAACCACCACACTCTGGGAGACCAGATCATAACCCAGGAGCTGAGAGACACCTTGTTCAGGCACTCAGGGATA
GCGCCGGGGACAGAACCAATGCCCACCACACGCACCATCCTCATGATGCTTCTCAGTCGCTACTCAGAGCCTTGGGGAAGTCCTGAGCGAGCAGCACTGGAGACCCCAAGCACCCAGGGTCAGGATGG
GTCCCCTGAGTCACTCATCCGATCTCTGGTGGGGGACCTGTCAGCAGAACTCTTCCTGGACTTGGAGCGTGTTCTGTGCCACGAAGGCAGCCCTCAAGGTGCCATGACGCCCCTCCTCAAGCGCCTCC
AGCAGGAAACACAGCCTTTCCTTCTGTTGCTGCGGACTCTAGATGCCCCTGGGCCCAACAGAGCTCTGCTGCTCACCGTACTCAGGGTCATGACACGACTACTGGATTATCCTGAGACAATGGTTCTC
CCCTGGCACGAGGTCTTGGAGCCCTGCCTCAACTGCCTGAATGGGCCAAGCAGTGACTCTGAGGTTGTCCAGGAACTGACCTGCTTCCTGCACCGCCTGGCTCTGATGCACAAAGACTATGCGGTAGT
GCTTTGCTGCCTGGGAGCCAAAGAAGCCCTCTCCAAAGTCCTGGACAAGCACTCCACTCAGCTCCTGCTGGCCTCGGAGCTCCGCCACCTGGTGACGGAGTGCGAGAAGTACGCCCAGCTCTACACTA
ACCTCACCTCGAGCCTCCTGGCTGCCTGCATCCAGATGGTGCTGGGCCAGATTGAAGACCACAGGCGAACCTACAAGCCCATCAACATCCCCTTCTTTGATGTGTTCCTCAGGCATCTCTGCCAGGGC
TCCAGTGTGGAAGTGAAGGAAGACAGGTGCTGGGAGAAGGTGGAGGTGTCCTCCAATCCACACCGGGCCAGCAAGCTGACGGACCGCAATCCCAAGACCTACTGGGAGTCCAACGGCAGCACTGGCTC
CCACTCCATCACCTTGCACATGCACCGTGGTGTTCTTATTAGGCAGCTGACCTTGCTTGTGGCCAGTGAGGATTCAAGTTACATGCCAGCCAGGGTGGTGGTGTTTGGGGGTGACAGTGTTGGCTGCA
TCAGCACCGAACTTAACACGGTGAATGTGGTGCCCTCTGCCAGCCGGGTGACACTCCTGGAGAACCTCAGCCGCTTCTGGCCCATCATCCAGATCCGAATAAAGCGCTGTCAGCAGGGCGGCATCGAC
ACTCGAGTTCGGGGTGTGGAGGTGCTGGGCCCCAAGCCCACCTTCTGGCCATTGTTCCGGGAGCAACTCTGCCGACGGACTTGTCTCTTCTACACAATTCGGGCACAAGCATGGAGCCGGGACATAGC
AGAGGACCGCCAGCGCCTCCTTCAGCTCTATCCTAGACTGAACAGAGTTTTACGCCATGAACAGAATTTTGCAGATCGCTTCCTCCCTGATGATGAGGCTGCCCAAGCACTGGGCAAAACCTGCTGGG
AGGCGCTGGTCAGCCCCCTGGTGCAGAACATCACCTCTCCCGATGCAGGGGGTGTGAGTTCCCTGGGATGGCTGCTGGACCAGTACCTGGAGCACAGGGAGAAAGCGAGGAGCCGCCAGGGTCAGGCA
GCATCCTTTGCTTCTCAAGTTCGGCGCTTATGCCACTTGCTGGTACACGTGGAAGCCCCTCCTGGGCCTTCTCCTGAGCCGTCCTCGCAGCCCCTCAGCAAGAGCAGTAAGAGTCAGGACGGAAGCCC
GGCCCCGGCCCCCGTCCGCCCCAGCACCACCCTTAGGAACATCACCCAGTGCTGGCTGGCGGTGGTGCAGGGACAGGCCAGCAGATTCCTGGCCTCAGCCTGGAGGGCCTCGGACTTCGTGCCTCGCT
ACTGTGATCTCTACGAGCGCTTGCAAAGAGCCGGCTCAGAGCTGTTCGGGCCGCGGGCAGCCTTCACCCTGGCCCTGCGCAGCGGCTTCTCTGGGGCTCTGCTGCAGCAGTCCTTCCTCACTGCTGCT
CACATAAGTGAGCAGTTTGCGAGGCACATTGACCAGCAGATCCAGGGTGGTTTGCTTGGTGGAGCTGCTGGGGTGGAAATGCTGGGGCGGCTTCAGCGGCACCTGGAGCCCATCATGGTCCTTTCTGG
CCTAGAGCTGGCCACTACTTTTGAGCACTTCTATCAGTACTACATGGCTGACAGGCTCCTGAGCTTGGGCTCGAGCTGGCTGGAGGGGGCCGTGCTGGAGCAGATTGGCCTCTGCTTCCCCAACCGCC
TCCCCCAGCTGATGCTGCAGAGCCTGCGCACCTCAGAGGAGCTGCAGCGTGGGTTCCTCCTCTTCCAGCTCCAGCAGCTCGACCGGCAGCTCTTGGAGCAGGGGGAGCAGGAGGAATGGAAGCTAGAG
AGACTGGAGGAAGAAGACAGGGGACAGGAGACTGGAAGAGAACTCCTTACAGAAGACCCAGGACCAGCCATTTCTGTCCTGGTCCTGTCACCGCGCTGCTGGCCGGTCTCCCCACTGTGCTACCTGCA
CCAGCCCAGGAAGCACCTTCCCACGGAGTTCTGTGATGCCCTTGACGGCTTCTCCAGCTTCTACAGCCACAGTCAGCACTACCCAGTCTTGGACATGGGACCACATCGGCGACTTCAGTGGACATGGC
TGGGCCGGGCTGAGCTGCAGTTTGGGGACCAGACCCTGCATGTGTCCACTGTGCAGATGTGGCTGCTGCTGAATTTCAACCAGACAGAGGAGGTGTCAGTAGAGATCTTGTTGAGGAACTCTGGCCTC
TCCCCTGAGCTCCTGCACCAGGCCCTTCTGCCGCTCACCTCAGACAGTGGTCCCTTAACACTGGAGGAGGCTCAGGACTTTCCACAGGGGGGGGTGCTGCGGCTTCGTGAGCCTAGGTCCCAGACCCA
TGAAGAGGTCCTGTGGCTGATACCTCCCCAGACGTATCTCAGTGTGGAAAAGGATGAGGGCCGAACCTTGGAGCAGAAGAGGAACCTCTTGAGCTGCCTTCTCGTACGGATACTCAAAGCCCACGGGG
AGAAAGGCCTGCACATCGATCAGCTGGTTTGTCTGGTTCTGGAGGCCTGGCAGAAGGGGCCAAATCCACCGGGGCGCCTGGGCCGCTCTGCTGCAGTGGGCGTGGCCTGTTCCAGCACTGACGTCCTC
TCTTGTATCCTGCATCTCCTGGGCCAGGGCTACGTGGAGCGGAGAGATGACCGACCTCAGGTCCTGATGTATGCCACCCCAGAGCCCATGGGGCACTGCCGGGGCCAGGCAGATGTCCCCTTTTGTGG
CAACCAGAGCACGGAGACCTCCAAACCTAGCCCAGAAGCTGTGGTGGCCCTGGCCTCTCTGCAGCTGCCGGCAGGCCGGACCATGAGTCCCCAGGAGGTAGAAGGATTGATGGAGCAGACAGTGCGGC
AGGTGCAGGAGACGCTGAACTTGGAGCCCGATGTGGCTCAGCACCTTCTGGCTTATTCCCACTGGGGCACGGAGCAGCTGCTACAAAGCTACAGCGAGGATCCCGAGCCACTGCTGCTCGCCGCAGGG
CTGCGAGTGCCCCAGCCCCAGGAGGTGCCCGCTCGCCCTGACCAGTGCCCCGTGTGCATCAGCCCCCTAGGGCCCAATGACGACTCGCCCTCCCTCTGCTGCCTGCACTGCTGCTGTAAGTCTTGCTG
GAACGAGTACCTGACGACTCGGATAGAGCAGAACTTTGTGCTGAACTGTACCTGCCCCATCGCTGACTGTCCCGCCCAGCCCACGGGAGCCTTCATCCGAAACATTGTCTCTTCCCCAGAGGTCATCT
CCAAGTATGAGAAGGCCCTTCTGCGAGGTTATGTGGAGAGCTGCTCCAACCTGACATGGTGCACCAACCCTCAGGGCTGCGACCGTATCCTGTGCCGCCAGGGCCTGGGCAGTGGGACCACCTGCTCT
AAGTGCGGCTGGGCCTCTTGCTTCAACTGTAGTTTTCCTGAGGCGCACTATCCTGCCAGCTGTGGCCACATGTCCCAGTGGGTTGACGATGGCGGCTACTATGACGGCATGAGCGTGGAGGCCCAGAG
CAAGCACCTGGCCAAGCTCATCTCCAAACGCTGTCCCAGCTGTCAGGCGCCTATCGAGAAGAATGAGGGGTGTCTACACATGACCTGTGCAAGATGTAACCATGGGTTCTGCTGGCGCTGCCTCAGGT
CCTGGAAGCCAAGCCACAAGGACTACTACAACTGCTCTGCCATGGTAAGCAAAGCAGCTCGCCAGGAGAAGCGGTTTCAGGACTATAACGAGAGGTGTACCTTCCACCACCAGGCCCGGGAGTTTGCT
GTCAACCTGCGGAACCAGGCCTCTGCCATCCATGAGGTGCCTCCGCCCAAATCCTTCACCTTCCTGCAAGACGCCTGCCGGGCCCTCGAGCAGGCTCGAAAGGTGCTGGCCTACGCCTGTGTCTATAG
CTTCTACAGCCAGGGCACGGAGTACATGGATGTGGTGGAGCAGCAGACGGAGAACCTGGAGCTGCACACGAATGCCCTGCAGATCCTCCTCGAGGAGACCTTGCTGCGCTGCCAGGACCTGGCCTCCT
CCCTGCGCCTCCTGCGGGCTGACTGCCTCAGCACAGGCACGGAGTTGCTCCGGAGGATCCAGGAGAGGCTGTTGGCCATCCTACAGCACTCGACCCAGGACTTCCGGGTCGGGCTGCAGAGTCCCTCA
GTAGAGACCCGGGAGGTGAAAGGGTCCAACGTGCCCAGTGACCAGCCCCAGGGCTCCTCAGGACTGGAAGTGGAAGACGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGATGTACCTGAGTGGCA
GCACGAGTTTGATGAGGAACTAGACAATGACAGCTTCTCCTACGATGAGGAGTCTGAGAACCTGGACCGAGAGACCTTCTTCTTTGGCGATGAAGATGACGATGATGAGTCCTATGACTGAGGGGGAG
GGGCAGGAAACACCTGGAGCTGCCGGGGCAGCAGGGCCACGGGGCTGTCATGTGAGAGGGGAACCCCAGTGTCTGAAGCACCTTCTGTTTACTGAATAAACCTCTTTTTTCACACAC

hide sequence

RefSeq Acc Id:

XM_039083508 ⟹ XP_038939436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,977,145 (+)	NCBI
mRatBN7.2	9	14,435,954 - 14,479,552 (+)	NCBI

RefSeq Acc Id:

XM_039083509 ⟹ XP_038939437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,977,145 (+)	NCBI
mRatBN7.2	9	14,435,953 - 14,479,552 (+)	NCBI

RefSeq Acc Id:

XM_039083510 ⟹ XP_038939438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,977,145 (+)	NCBI
mRatBN7.2	9	14,435,951 - 14,479,552 (+)	NCBI

RefSeq Acc Id:

XM_039083511 ⟹ XP_038939439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,706 - 21,977,145 (+)	NCBI
mRatBN7.2	9	14,435,952 - 14,479,552 (+)	NCBI

RefSeq Acc Id:

XM_039083512 ⟹ XP_038939440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,973,499 (+)	NCBI
mRatBN7.2	9	14,435,951 - 14,475,898 (+)	NCBI

RefSeq Acc Id:

XM_063267094 ⟹ XP_063123164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,977,145 (+)	NCBI

RefSeq Acc Id:

XR_005488889

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,973,497 (+)	NCBI
mRatBN7.2	9	14,435,950 - 14,477,012 (+)	NCBI

RefSeq Acc Id:

XR_005488890

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,699 - 21,967,916 (+)	NCBI
mRatBN7.2	9	14,435,948 - 14,470,316 (+)	NCBI

RefSeq Acc Id:

XR_005488891

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,967,916 (+)	NCBI
mRatBN7.2	9	14,435,955 - 14,470,316 (+)	NCBI

RefSeq Acc Id:

XR_010054591

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	21,933,702 - 21,969,429 (+)	NCBI


Protein RefSeqs	NP_001178511	(Get FASTA)	NCBI Sequence Viewer
	XP_038939436	(Get FASTA)	NCBI Sequence Viewer
	XP_038939437	(Get FASTA)	NCBI Sequence Viewer
	XP_038939438	(Get FASTA)	NCBI Sequence Viewer
	XP_038939439	(Get FASTA)	NCBI Sequence Viewer
	XP_038939440	(Get FASTA)	NCBI Sequence Viewer
	XP_063123164	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18827	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073679
	ENSRNOP00000073679.2
	ENSRNOP00000104760

RefSeq Acc Id:

NP_001178511 ⟸ NM_001191582

- Sequence:

show sequence

MVGEQRAGDLMVPLGPRLQAYPEELIRQRPGHDGHPEYLIRWRVLKCSEEGKVSLEEEKTEYLLMWLSAPEVYANCPMLLRERSVSKGPQYEPTGEVGSFPRDPGGLDELAMAEMEDDVRALVRRAAR
QLAEGGASNLTVAVLHTIHVLSAYASIGPLTGVFRETGALDLLMHMLCSPEPQIRRSAGKMLQALAAHDAGSRAHVLLSLSQHEGIEQHMDFDSRYTLLELFAETTSTEEHCMALEGIHLPQLPGKLL
FSLVKRYLCVTSLLDQLNNSPESGAGDQSSPCLPKEKSRGQRELEFSMAVGNLISELVRSMGWARNLSEQGALPPRPSRSIFQPCLSGPPLLLPTIVTTPRKPGRAFRGRSEFSSRSGYGEYVQQTVQ
PGMRVRILDDYEEISAGDEGEFQQSNNGVPPVQVFWQSTGRTYWVHWHMLEILGPEEATREPASAAVEKGAGATALGTACPSWDRKPAHGLYSLPYLQPESQKSEEPGYLTQGEWWELLFFIKKLDLC
EQQPIFQNLHEKLDKEAVGEKTLGEISVPIEMAEGVLQVLSNRFEGSNLCDLLNSHIYTKYGRLPKEPGRLPPSRGHSCTSEPEEGSESAASFSEKEESPKAEAEPAGAKPESPKAQSDSQLFNQLLV
TEGMALAPETQAAATEMARTLRGPGPRSSLDQHVAAVLATVQISSLDTNLQLSGLGALSQAVEEVTERDHPLVRPDRSLREKLVKTLVDLLTNQVGEKMVVVLALRLLYLLMTKHEWRPLFAREGGIY
AVLICMQEYKTSVLVQQAGLAALKMLAIANSSEVPTFVTGRDSIQPLFDTQMTREIFASIDSATRPGSESLLLSVPAAVVLMLNTEGCSSAVRNGLLLLNLLLCNHHTLGDQIITQELRDTLFRHSGI
APGTEPMPTTRTILMMLLSRYSEPWGSPERAALETPSTQGQDGSPESLIRSLVGDLSAELFLDLERVLCHEGSPQGAMTPLLKRLQQETQPFLLLLRTLDAPGPNRALLLTVLRVMTRLLDYPETMVL
PWHEVLEPCLNCLNGPSSDSEVVQELTCFLHRLALMHKDYAVVLCCLGAKEALSKVLDKHSTQLLLASELRHLVTECEKYAQLYTNLTSSLLAACIQMVLGQIEDHRRTYKPINIPFFDVFLRHLCQG
SSVEVKEDRCWEKVEVSSNPHRASKLTDRNPKTYWESNGSTGSHSITLHMHRGVLIRQLTLLVASEDSSYMPARVVVFGGDSVGCISTELNTVNVVPSASRVTLLENLSRFWPIIQIRIKRCQQGGID
TRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQAWSRDIAEDRQRLLQLYPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNITSPDAGGVSSLGWLLDQYLEHREKARSRQGQA
ASFASQVRRLCHLLVHVEAPPGPSPEPSSQPLSKSSKSQDGSPAPAPVRPSTTLRNITQCWLAVVQGQASRFLASAWRASDFVPRYCDLYERLQRAGSELFGPRAAFTLALRSGFSGALLQQSFLTAA
HISEQFARHIDQQIQGGLLGGAAGVEMLGRLQRHLEPIMVLSGLELATTFEHFYQYYMADRLLSLGSSWLEGAVLEQIGLCFPNRLPQLMLQSLRTSEELQRGFLLFQLQQLDRQLLEQGEQEEWKLE
RLEEEDRGQETGRELLTEDPGPAISVLVLSPRCWPVSPLCYLHQPRKHLPTEFCDALDGFSSFYSHSQHYPVLDMGPHRRLQWTWLGRAELQFGDQTLHVSTVQMWLLLNFNQTEEVSVEILLRNSGL
SPELLHQALLPLTSDSGPLTLEEAQDFPQGGVLRLREPRSQTHEEVLWLIPPQTYLSVEKDEGRTLEQKRNLLSCLLVRILKAHGEKGLHIDQLVCLVLEAWQKGPNPPGRLGRSAAVGVACSSTDVL
SCILHLLGQGYVERRDDRPQVLMYATPEPMGHCRGQADVPFCGNQSTETSKPSPEAVVALASLQLPAGRTMSPQEVEGLMEQTVRQVQETLNLEPDVAQHLLAYSHWGTEQLLQSYSEDPEPLLLAAG
LRVPQPQEVPARPDQCPVCISPLGPNDDSPSLCCLHCCCKSCWNEYLTTRIEQNFVLNCTCPIADCPAQPTGAFIRNIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGSGTTCS
KCGWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLRSWKPSHKDYYNCSAMVSKAARQEKRFQDYNERCTFHHQAREFA
VNLRNQASAIHEVPPPKSFTFLQDACRALEQARKVLAYACVYSFYSQGTEYMDVVEQQTENLELHTNALQILLEETLLRCQDLASSLRLLRADCLSTGTELLRRIQERLLAILQHSTQDFRVGLQSPS
VETREVKGSNVPSDQPQGSSGLEVEDEEEEEEEEEEEDVPEWQHEFDEELDNDSFSYDEESENLDRETFFFGDEDDDDESYD

hide sequence

Ensembl Acc Id:

ENSRNOP00000073679 ⟸ ENSRNOT00000080815

Ensembl Acc Id:

ENSRNOP00000028786 ⟸ ENSRNOT00000028786

RefSeq Acc Id:	XP_038939438 ⟸ XM_039083510
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038939440 ⟸ XM_039083512
- Peptide Label:	isoform X6

Protein Domains

Cullin family profile DOC RING-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZP8-F1-model_v2	AlphaFold	D3ZZP8	1-2514	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13696517

Promoter ID:

EPDNEW_R7041

Type:

multiple initiation site

Name:

Cul9_1

Description:

cullin 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	16,747,678 - 16,747,738	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-28229	BioCyc
Ensembl Genes	ENSRNOG00000018372	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000080815	ENTREZGENE
	ENSRNOT00000080815.2	UniProtKB/TrEMBL
	ENSRNOT00000164147	ENTREZGENE
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.20.120.1750	UniProtKB/TrEMBL
	1.25.10.10	UniProtKB/TrEMBL
	2.30.30.30	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	Cullin, Chain C, Domain 2	UniProtKB/TrEMBL
	Galactose-binding domain-like	UniProtKB/TrEMBL
InterPro	Ananphase-promot_cplx_su10	UniProtKB/TrEMBL
	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	BRcat_RBR_CUL9	UniProtKB/TrEMBL
	CPH_domain	UniProtKB/TrEMBL
	Cullin	UniProtKB/TrEMBL
	Cullin_CS	UniProtKB/TrEMBL
	Cullin_homology	UniProtKB/TrEMBL
	Cullin_homology_sf	UniProtKB/TrEMBL
	Cullin_neddylation_domain	UniProtKB/TrEMBL
	Galactose-bd-like	UniProtKB/TrEMBL
	Rcat_RBR_CUL9	UniProtKB/TrEMBL
	Rib_L2_dom2	UniProtKB/TrEMBL
	TRIAD_supradom	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	Znf_C6HC	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
NCBI Gene	316228	ENTREZGENE
PANTHER	CULLIN AND GALACTOSE-BINDING DOMAIN-CONTAINING	UniProtKB/TrEMBL
	PTHR22771:SF2	UniProtKB/TrEMBL
Pfam	APC10	UniProtKB/TrEMBL
	Cul7	UniProtKB/TrEMBL
	IBR	UniProtKB/TrEMBL
	IBR_1	UniProtKB/TrEMBL
PhenoGen	Cul9	PhenoGen
PROSITE	CULLIN_1	UniProtKB/TrEMBL
	CULLIN_2	UniProtKB/TrEMBL
	DOC	UniProtKB/TrEMBL
	TRIAD	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018372	RatGTEx
SMART	APC10	UniProtKB/TrEMBL
	Cullin_Nedd8	UniProtKB/TrEMBL
	IBR	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
	Cullin_homology	UniProtKB/TrEMBL
	Gal_bind_like	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A0A0G2K652	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Cul9	cullin 9	Parc	p53-associated parkin-like cytoplasmic protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Parc	p53-associated parkin-like cytoplasmic protein	RGD1562008_predicted	similar to p53-associated parkin-like cytoplasmic protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562008_predicted	similar to p53-associated parkin-like cytoplasmic protein (predicted)	LOC316228	similar to p53-associated parkin-like cytoplasmic protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC316228	similar to p53-associated parkin-like cytoplasmic protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar