CUL9 (cullin 9) - Rat Genome Database

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Advanced Search (OLGA)
Gene: CUL9 (cullin 9) Sus scrofa
Analyze
Symbol: CUL9
Name: cullin 9
RGD ID: 14169118
Description: ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN microtubule cytoskeleton organization (inferred); protein ubiquitination (inferred); regulation of mitotic nuclear division (inferred); ASSOCIATED WITH imperforate anus (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cullin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,224,332 - 38,263,425 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,224,023 - 38,263,429 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,724,604 - 43,763,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CUL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,224,332 - 38,263,425 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,224,023 - 38,263,429 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,724,604 - 43,763,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,182,196 - 43,224,587 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,182,184 - 43,224,587 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,149,934 - 43,192,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,257,900 - 43,300,303 (+)NCBINCBI36Build 36hg18NCBI36
Celera644,702,143 - 44,744,534 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,866,612 - 42,909,021 (+)NCBIHuRef
CHM1_1643,152,810 - 43,195,260 (+)NCBICHM1_1
T2T-CHM13v2.0643,010,969 - 43,053,382 (+)NCBIT2T-CHM13v2.0
Cul9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,811,535 - 46,857,314 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,811,498 - 46,857,314 (-)EnsemblGRCm39 Ensembl
GRCm381746,500,609 - 46,546,388 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,500,572 - 46,546,388 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,637,554 - 46,683,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,963,794 - 46,009,577 (-)NCBIMGSCv36mm8
Celera1749,936,322 - 49,982,386 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Cul9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,933,699 - 21,977,145 (+)NCBIGRCr8
mRatBN7.2914,435,948 - 14,479,552 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,436,111 - 14,479,548 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,019,900 - 23,063,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,082,972 - 28,126,214 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,383,281 - 26,426,587 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,747,449 - 16,844,033 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,747,662 - 16,844,057 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,652,541 - 15,745,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,800,224 - 9,863,348 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera912,185,789 - 12,227,563 (+)NCBICelera
Cytogenetic Map9q12NCBI
Cul9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,109,889 - 9,147,526 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,109,997 - 9,145,181 (+)NCBIChiLan1.0ChiLan1.0
CUL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,682,085 - 57,724,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,551,886 - 53,594,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,773,955 - 42,816,361 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,067,392 - 44,110,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,067,389 - 44,110,122 (+)Ensemblpanpan1.1panPan2
CUL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,674,408 - 11,714,578 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,676,271 - 11,714,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,701,389 - 11,741,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,156,979 - 12,196,916 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,157,064 - 12,196,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,684,308 - 11,724,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,768,727 - 11,808,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,863,521 - 11,903,458 (+)NCBIUU_Cfam_GSD_1.0
Cul9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,180,814 - 47,216,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,743,202 - 16,779,298 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,743,221 - 16,779,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,928,167 - 28,982,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,927,967 - 28,982,483 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,241,772 - 43,286,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cul9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,335,626 - 16,368,926 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,335,466 - 16,371,313 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CUL9
840 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001929268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013977952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021098736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021098737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021098738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021098741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021098742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002345739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01094608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000030706   ⟹   ENSSSCP00000022009
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,224,332 - 38,263,425 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059861   ⟹   ENSSSCP00000048218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,225,745 - 38,263,337 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000065918   ⟹   ENSSSCP00000051035
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,224,337 - 38,266,419 (+)Ensembl
RefSeq Acc Id: XM_001929268   ⟹   XP_001929303
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,875 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013977952   ⟹   XP_013833406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,027 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098736   ⟹   XP_020954395
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,875 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098737   ⟹   XP_020954396
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,875 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098738   ⟹   XP_020954397
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,875 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098741   ⟹   XP_020954400
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,234 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098742   ⟹   XP_020954401
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,874 - 38,260,881 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345733
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,874 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345734
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,874 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345735
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,225,874 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345736
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,233 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345737
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,233 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345738
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,023 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345739
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,224,023 - 38,263,429 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013833406   ⟸   XM_013977952
- Peptide Label: isoform X6
- UniProtKB: A0A8D2BPE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954400   ⟸   XM_021098741
- Peptide Label: isoform X5
- UniProtKB: A0A8D2BPE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954401   ⟸   XM_021098742
- Peptide Label: isoform X7
- UniProtKB: A0A8D1W2G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954395   ⟸   XM_021098736
- Peptide Label: isoform X1
- UniProtKB: A0A8D1W2G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954396   ⟸   XM_021098737
- Peptide Label: isoform X2
- UniProtKB: A0A8D1W2G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954397   ⟸   XM_021098738
- Peptide Label: isoform X3
- UniProtKB: A0A8D1W2G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001929303   ⟸   XM_001929268
- Peptide Label: isoform X4
- UniProtKB: A0A8D1W2G5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000022009   ⟸   ENSSSCT00000030706
Ensembl Acc Id: ENSSSCP00000051035   ⟸   ENSSSCT00000065918
Ensembl Acc Id: ENSSSCP00000048218   ⟸   ENSSSCT00000059861
Protein Domains
Cullin family profile   DOC   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035045040 UniProtKB/TrEMBL
  ENSSSCG00045030854 UniProtKB/TrEMBL
  ENSSSCG00055020315 UniProtKB/TrEMBL
  ENSSSCG00060057171 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030706 ENTREZGENE
  ENSSSCT00000030706.4 UniProtKB/TrEMBL
  ENSSSCT00035059848.1 UniProtKB/TrEMBL
  ENSSSCT00035059857.1 UniProtKB/TrEMBL
  ENSSSCT00045052570.1 UniProtKB/TrEMBL
  ENSSSCT00045052994.1 UniProtKB/TrEMBL
  ENSSSCT00055039900.1 UniProtKB/TrEMBL
  ENSSSCT00055040170.1 UniProtKB/TrEMBL
  ENSSSCT00060077901.1 UniProtKB/TrEMBL
  ENSSSCT00060077907.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.120.1750 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
  2.30.30.30 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro APC_su10/DOC_dom UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  BRcat_RBR_CUL9 UniProtKB/TrEMBL
  CPH_domain UniProtKB/TrEMBL
  Cullin UniProtKB/TrEMBL
  Cullin_CS UniProtKB/TrEMBL
  Cullin_homology UniProtKB/TrEMBL
  Cullin_homology_sf UniProtKB/TrEMBL
  Cullin_N UniProtKB/TrEMBL
  Cullin_neddylation_domain UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  Rcat_RBR_CUL9 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  RING-HC_RBR_CUL9 UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene CUL9 ENTREZGENE
PANTHER CULLIN AND GALACTOSE-BINDING DOMAIN-CONTAINING UniProtKB/TrEMBL
  PTHR22771:SF2 UniProtKB/TrEMBL
Pfam ANAPC10 UniProtKB/TrEMBL
  Cul7 UniProtKB/TrEMBL
  Cullin UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
  IBR_1 UniProtKB/TrEMBL
PROSITE CULLIN_1 UniProtKB/TrEMBL
  CULLIN_2 UniProtKB/TrEMBL
  DOC UniProtKB/TrEMBL
  TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART APC10 UniProtKB/TrEMBL
  Cullin_Nedd8 UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF75632 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8D1ILG8_PIG UniProtKB/TrEMBL
  A0A8D1IQC8_PIG UniProtKB/TrEMBL
  A0A8D1RA19_PIG UniProtKB/TrEMBL
  A0A8D1U742_PIG UniProtKB/TrEMBL
  A0A8D1W2G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BPE6 ENTREZGENE, UniProtKB/TrEMBL
  I3LD80_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87090 ENTREZGENE