Symbol:
Slc6a11
Name:
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
RGD ID:
1557910
MGI Page
MGI
Description:
Enables gamma-aminobutyric acid:sodium:chloride symporter activity and taurine:sodium symporter activity. Involved in neurotransmitter uptake. Is active in synapse. Is expressed in several structures, including central nervous system; eye; genitourinary system; gut; and liver and biliary system. Orthologous to human SLC6A11 (solute carrier family 6 member 11).
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
D930045G19Rik; E130202I16Rik; Gabt; Gabt4; gamma-aminobutyric acid (GABA-A) transporter 4; GAT; GAT-3; GAT-4; Gat3; GAT4; sodium- and chloride-dependent GABA transporter 3; sodium- and chloride-dependent GABA transporter 4; solute carrier family 6 member 11
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SLC6A11 (solute carrier family 6 member 11) HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):
Slc6a11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Slc6a11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SLC6A11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SLC6A11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Slc6a11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SLC6A11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SLC6A11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Slc6a11 (solute carrier family 6 member 11) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
SLC6A6 (solute carrier family 6 member 6) HGNC
OrthoMCL
Homo sapiens (human):
SLC6A1 (solute carrier family 6 member 1) HGNC
OrthoMCL
Homo sapiens (human):
SLC6A12 (solute carrier family 6 member 12) HGNC
OrthoMCL
Homo sapiens (human):
SLC6A13 (solute carrier family 6 member 13) HGNC
OrthoMCL
Homo sapiens (human):
SLC6A8 (solute carrier family 6 member 8) HGNC
OrthoMCL
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Slc6a11 (solute carrier family 6 member 11)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
SLC6A11 (solute carrier family 6 member 11)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
slc6a11a (solute carrier family 6 member 11a)
Alliance
DIOPT (ZFIN)
Danio rerio (zebrafish):
slc6a11b (solute carrier family 6 member 11b)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Drosophila melanogaster (fruit fly):
CG13795
Alliance
DIOPT (Ensembl Compara|PANTHER)
Drosophila melanogaster (fruit fly):
CG13796
Alliance
DIOPT (Ensembl Compara|PANTHER)
Drosophila melanogaster (fruit fly):
CG33296
Alliance
DIOPT (Ensembl Compara|PANTHER)
Drosophila melanogaster (fruit fly):
CG13793
Alliance
DIOPT (Ensembl Compara|PANTHER)
Drosophila melanogaster (fruit fly):
CG13794
Alliance
DIOPT (Ensembl Compara|PANTHER)
Drosophila melanogaster (fruit fly):
CG31904
Alliance
DIOPT (Ensembl Compara|PANTHER)
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 114,108,202 - 114,226,847 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 114,108,202 - 114,226,913 (+) Ensembl GRCm39 Ensembl GRCm38 6 114,131,241 - 114,249,886 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 114,131,241 - 114,249,952 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 114,081,235 - 114,199,880 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 114,096,836 - 114,215,481 (+) NCBI MGSCv36 mm8 Celera 6 115,952,329 - 116,070,890 (+) NCBI Celera Cytogenetic Map 6 E3 NCBI cM Map 6 52.98 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Slc6a11 Mouse (+)-pilocarpine decreases expression EXP 6480464 Pilocarpine results in decreased expression of SLC6A11 mRNA CTD PMID:21219332 Slc6a11 Mouse 1,2-dimethylhydrazine decreases expression EXP 6480464 1 and 2-Dimethylhydrazine results in decreased expression of SLC6A11 mRNA CTD PMID:22206623 Slc6a11 Mouse 17beta-estradiol multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [Progesterone co-treated with Estradiol] results in decreased expression of SLC6A11 mRNA CTD PMID:18692832 Slc6a11 Mouse 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO SLC6A11 (Homo sapiens) 6480464 Tetrachlorodibenzodioxin results in increased expression of SLC6A11 mRNA CTD PMID:20106945 Slc6a11 Mouse 2,3,7,8-tetrachlorodibenzodioxine decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Tetrachlorodibenzodioxin results in decreased expression of SLC6A11 mRNA CTD PMID:32109520 Slc6a11 Mouse 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of SLC6A11 mRNA CTD PMID:24680724 Slc6a11 Mouse 2,3,7,8-Tetrachlorodibenzofuran decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 2 more ... CTD PMID:32109520 Slc6a11 Mouse 2-hydroxypropanoic acid decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Lactic Acid results in decreased expression of SLC6A11 mRNA CTD PMID:30851411 Slc6a11 Mouse 2-palmitoylglycerol increases expression ISO SLC6A11 (Homo sapiens) 6480464 2-palmitoylglycerol results in increased expression of SLC6A11 mRNA CTD PMID:37199045 Slc6a11 Mouse 4,4'-sulfonyldiphenol decreases expression EXP 6480464 bisphenol S results in decreased expression of SLC6A11 mRNA CTD PMID:30951980 Slc6a11 Mouse 4,4'-sulfonyldiphenol decreases methylation ISO SLC6A11 (Homo sapiens) 6480464 bisphenol S results in decreased methylation of SLC6A11 gene CTD PMID:31601247 Slc6a11 Mouse 6-propyl-2-thiouracil decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Propylthiouracil results in decreased expression of SLC6A11 mRNA CTD PMID:24780913 Slc6a11 Mouse acrylamide decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Acrylamide results in decreased expression of SLC6A11 mRNA CTD PMID:28959563 Slc6a11 Mouse aflatoxin B1 affects methylation ISO SLC6A11 (Homo sapiens) 6480464 Aflatoxin B1 affects the methylation of SLC6A11 intron CTD PMID:30157460 Slc6a11 Mouse aflatoxin B1 decreases methylation ISO SLC6A11 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of SLC6A11 3' UTR CTD PMID:30157460 Slc6a11 Mouse Aflatoxin B2 alpha increases methylation ISO SLC6A11 (Homo sapiens) 6480464 aflatoxin B2 results in increased methylation of SLC6A11 exon and aflatoxin B2 results in increased methylation of SLC6A11 intron CTD PMID:30157460 Slc6a11 Mouse all-trans-retinoic acid multiple interactions EXP 6480464 [bisphenol F co-treated with Tretinoin] results in increased expression of SLC6A11 mRNA CTD PMID:30951980 Slc6a11 Mouse ammonium chloride affects expression ISO Slc6a11 (Rattus norvegicus) 6480464 Ammonium Chloride affects the expression of SLC6A11 mRNA CTD PMID:16483693 Slc6a11 Mouse atrazine affects methylation ISO Slc6a11 (Rattus norvegicus) 6480464 Atrazine affects the methylation of SLC6A11 gene CTD PMID:35440735 Slc6a11 Mouse Azoxymethane multiple interactions EXP 6480464 [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of SLC6A11 mRNA CTD PMID:29950665 Slc6a11 Mouse benzo[a]pyrene decreases methylation ISO SLC6A11 (Homo sapiens) 6480464 Benzo(a)pyrene results in decreased methylation of SLC6A11 exon and Benzo(a)pyrene results in decreased methylation of SLC6A11 promoter CTD PMID:27901495 Slc6a11 Mouse benzo[e]pyrene increases methylation ISO SLC6A11 (Homo sapiens) 6480464 benzo(e)pyrene results in increased methylation of SLC6A11 intron CTD PMID:30157460 Slc6a11 Mouse bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SLC6A11 mRNA CTD PMID:26063408 Slc6a11 Mouse bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SLC6A11 mRNA CTD PMID:32156529 Slc6a11 Mouse bisphenol A increases methylation EXP 6480464 bisphenol A results in increased methylation of SLC6A11 promoter CTD PMID:27312807 Slc6a11 Mouse bisphenol A decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 bisphenol A results in decreased expression of SLC6A11 mRNA CTD PMID:25181051 more ... Slc6a11 Mouse bisphenol F multiple interactions EXP 6480464 [bisphenol F co-treated with Tretinoin] results in increased expression of SLC6A11 mRNA CTD PMID:30951980 Slc6a11 Mouse bisphenol F decreases expression EXP 6480464 bisphenol F results in decreased expression of SLC6A11 mRNA CTD PMID:30951980 Slc6a11 Mouse cadmium dichloride decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Cadmium Chloride results in decreased expression of SLC6A11 mRNA CTD PMID:38568856 Slc6a11 Mouse calciol decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Cholecalciferol deficiency results in decreased expression of SLC6A11 protein CTD PMID:30367913 Slc6a11 Mouse chlorpyrifos increases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Chlorpyrifos results in increased expression of SLC6A11 protein CTD PMID:34058248 Slc6a11 Mouse cobalt dichloride increases expression ISO SLC6A11 (Homo sapiens) 6480464 cobaltous chloride results in increased expression of SLC6A11 mRNA CTD PMID:17553155 Slc6a11 Mouse dextran sulfate multiple interactions EXP 6480464 [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of SLC6A11 mRNA CTD PMID:29950665 Slc6a11 Mouse diazepam increases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Diazepam results in increased expression of SLC6A11 mRNA CTD PMID:15802192 Slc6a11 Mouse dorsomorphin multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of SLC6A11 mRNA CTD PMID:27188386 Slc6a11 Mouse epoxiconazole increases expression EXP 6480464 epoxiconazole results in increased expression of SLC6A11 mRNA CTD PMID:35436446 Slc6a11 Mouse ethanol affects splicing EXP 6480464 Ethanol affects the splicing of SLC6A11 mRNA CTD PMID:30319688 Slc6a11 Mouse ethanol increases expression EXP 6480464 Ethanol results in increased expression of SLC6A11 mRNA CTD PMID:30319688 Slc6a11 Mouse ethylparaben decreases expression ISO SLC6A11 (Homo sapiens) 6480464 ethyl-p-hydroxybenzoate results in decreased expression of SLC6A11 mRNA CTD PMID:37690743 Slc6a11 Mouse flufenamic acid multiple interactions EXP 6480464 Flufenamic Acid inhibits the reaction [SLC6A11 protein results in increased uptake of gamma-Aminobutyric Acid] CTD PMID:15981712 Slc6a11 Mouse gamma-aminobutyric acid increases export ISO SLC6A11 (Homo sapiens) 6480464 SLC6A11 results in increased export of gamma-Aminobutyric Acid CTD PMID:21748804 Slc6a11 Mouse gamma-aminobutyric acid decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 gamma-Aminobutyric Acid results in decreased expression of SLC6A11 mRNA CTD PMID:26924987 Slc6a11 Mouse gamma-aminobutyric acid increases uptake EXP 6480464 SLC6A11 protein results in increased uptake of gamma-Aminobutyric Acid CTD PMID:15981712 Slc6a11 Mouse gamma-aminobutyric acid multiple interactions EXP 6480464 Flufenamic Acid inhibits the reaction [SLC6A11 protein results in increased uptake of gamma-Aminobutyric Acid] more ... CTD PMID:15981712 Slc6a11 Mouse lead diacetate decreases expression EXP 6480464 lead acetate results in decreased expression of SLC6A11 mRNA CTD PMID:22613225 Slc6a11 Mouse lead(0) affects expression ISO SLC6A11 (Homo sapiens) 6480464 Lead affects the expression of SLC6A11 mRNA CTD PMID:28903495 Slc6a11 Mouse lipopolysaccharide decreases expression EXP 6480464 Lipopolysaccharides results in decreased expression of SLC6A11 mRNA CTD PMID:21219332 Slc6a11 Mouse lipopolysaccharide multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of SLC6A11 mRNA CTD PMID:35811015 Slc6a11 Mouse lipopolysaccharide decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Lipopolysaccharides results in decreased expression of SLC6A11 mRNA CTD PMID:35811015 Slc6a11 Mouse methapyrilene increases methylation ISO SLC6A11 (Homo sapiens) 6480464 Methapyrilene results in increased methylation of SLC6A11 intron CTD PMID:30157460 Slc6a11 Mouse methoxychlor affects methylation ISO Slc6a11 (Rattus norvegicus) 6480464 Methoxychlor affects the methylation of SLC6A11 gene CTD PMID:35440735 Slc6a11 Mouse N-nitrosodiethylamine decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Diethylnitrosamine results in decreased expression of SLC6A11 mRNA CTD PMID:20360939 Slc6a11 Mouse Niflumic acid multiple interactions EXP 6480464 Niflumic Acid inhibits the reaction [SLC6A11 protein results in increased uptake of gamma-Aminobutyric Acid] CTD PMID:15981712 Slc6a11 Mouse ozone decreases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Ozone results in decreased expression of SLC6A11 mRNA CTD PMID:16330353 Slc6a11 Mouse paraquat increases expression EXP 6480464 Paraquat results in increased expression of SLC6A11 mRNA CTD PMID:21371552 Slc6a11 Mouse phenylmercury acetate decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Phenylmercuric Acetate results in decreased expression of SLC6A11 mRNA CTD PMID:26272509 Slc6a11 Mouse phenylmercury acetate multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of SLC6A11 mRNA CTD PMID:27188386 Slc6a11 Mouse potassium dichromate decreases expression EXP 6480464 Potassium Dichromate results in decreased expression of SLC6A11 mRNA CTD PMID:23608068 Slc6a11 Mouse progesterone decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Progesterone results in decreased expression of SLC6A11 mRNA CTD PMID:18692832 Slc6a11 Mouse progesterone multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [Progesterone co-treated with Estradiol] results in decreased expression of SLC6A11 mRNA CTD PMID:18692832 Slc6a11 Mouse quercetin decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Quercetin results in decreased expression of SLC6A11 mRNA CTD PMID:21632981 Slc6a11 Mouse rac-lactic acid decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Lactic Acid results in decreased expression of SLC6A11 mRNA CTD PMID:30851411 Slc6a11 Mouse resveratrol multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in decreased expression of SLC6A11 mRNA CTD PMID:23557933 Slc6a11 Mouse S-(1,2-dichlorovinyl)-L-cysteine multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of SLC6A11 mRNA CTD PMID:35811015 Slc6a11 Mouse SB 431542 multiple interactions ISO SLC6A11 (Homo sapiens) 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of SLC6A11 mRNA CTD PMID:27188386 Slc6a11 Mouse sodium arsenite decreases expression ISO SLC6A11 (Homo sapiens) 6480464 sodium arsenite results in decreased expression of SLC6A11 mRNA CTD PMID:38568856 Slc6a11 Mouse sodium arsenite increases expression ISO SLC6A11 (Homo sapiens) 6480464 sodium arsenite results in increased expression of SLC6A11 mRNA CTD PMID:34032870 Slc6a11 Mouse sodium atom multiple interactions EXP 6480464 SLC6A11 protein binds to and results in increased uptake of Sodium more ... CTD PMID:15981712 Slc6a11 Mouse tetrachloromethane increases expression ISO Slc6a11 (Rattus norvegicus) 6480464 Carbon Tetrachloride results in increased expression of SLC6A11 mRNA CTD PMID:31150632 Slc6a11 Mouse titanium dioxide multiple interactions EXP 6480464 [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of SLC6A11 mRNA CTD PMID:29950665 Slc6a11 Mouse titanium dioxide decreases methylation EXP 6480464 titanium dioxide results in decreased methylation of SLC6A11 gene CTD PMID:35295148 Slc6a11 Mouse valproic acid decreases expression ISO SLC6A11 (Homo sapiens) 6480464 Valproic Acid results in decreased expression of SLC6A11 mRNA CTD PMID:28001369 Slc6a11 Mouse zidovudine increases expression ISO SLC6A11 (Homo sapiens) 6480464 Zidovudine results in increased expression of SLC6A11 mRNA CTD PMID:24292225
(+)-pilocarpine (EXP) 1,2-dimethylhydrazine (EXP) 17beta-estradiol (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2,3,7,8-Tetrachlorodibenzofuran (ISO) 2-hydroxypropanoic acid (ISO) 2-palmitoylglycerol (ISO) 4,4'-sulfonyldiphenol (EXP,ISO) 6-propyl-2-thiouracil (ISO) acrylamide (ISO) aflatoxin B1 (ISO) Aflatoxin B2 alpha (ISO) all-trans-retinoic acid (EXP) ammonium chloride (ISO) atrazine (ISO) Azoxymethane (EXP) benzo[a]pyrene (ISO) benzo[e]pyrene (ISO) bisphenol A (EXP,ISO) bisphenol F (EXP) cadmium dichloride (ISO) calciol (ISO) chlorpyrifos (ISO) cobalt dichloride (ISO) dextran sulfate (EXP) diazepam (ISO) dorsomorphin (ISO) epoxiconazole (EXP) ethanol (EXP) ethylparaben (ISO) flufenamic acid (EXP) gamma-aminobutyric acid (EXP,ISO) lead diacetate (EXP) lead(0) (ISO) lipopolysaccharide (EXP,ISO) methapyrilene (ISO) methoxychlor (ISO) N-nitrosodiethylamine (ISO) Niflumic acid (EXP) ozone (ISO) paraquat (EXP) phenylmercury acetate (ISO) potassium dichromate (EXP) progesterone (ISO) quercetin (ISO) rac-lactic acid (ISO) resveratrol (ISO) S-(1,2-dichlorovinyl)-L-cysteine (ISO) SB 431542 (ISO) sodium arsenite (ISO) sodium atom (EXP) tetrachloromethane (ISO) titanium dioxide (EXP) valproic acid (ISO) zidovudine (ISO)
1.
Functional annotation of a full-length mouse cDNA collection.
Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.
Transient focal ischemia triggers neuronal expression of GAT-3 in the rat perilesional cortex.
Melone M, etal., Neurobiol Dis 2003 Oct;14(1):120-32.
3.
MGDs mouse GO annotations
MGD data from the GO Consortium
4.
MGD IEA
MGD IEA
5.
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.
Mouse MP Annotation Import Pipeline
RGD automated import pipeline
7.
ClinVar Automated Import and Annotation Pipeline
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
9.
Effect of levetiracetam on molecular regulation of hippocampal glutamate and GABA transporters in rats with chronic seizures induced by amygdalar FeCl3 injection.
Ueda Y, etal., Brain Res. 2007 Jun 2;1151:55-61. Epub 2007 Mar 13.
Slc6a11 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 114,108,202 - 114,226,847 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 114,108,202 - 114,226,913 (+) Ensembl GRCm39 Ensembl GRCm38 6 114,131,241 - 114,249,886 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 114,131,241 - 114,249,952 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 114,081,235 - 114,199,880 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 114,096,836 - 114,215,481 (+) NCBI MGSCv36 mm8 Celera 6 115,952,329 - 116,070,890 (+) NCBI Celera Cytogenetic Map 6 E3 NCBI cM Map 6 52.98 NCBI
SLC6A11 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 3 10,816,228 - 10,940,714 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 3 10,816,201 - 10,940,714 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 3 10,857,913 - 10,982,400 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 3 10,832,917 - 10,955,146 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 3 10,832,916 - 10,955,146 NCBI Celera 3 10,793,362 - 10,915,588 (+) NCBI Celera Cytogenetic Map 3 p25.3 NCBI HuRef 3 10,792,720 - 10,914,941 (+) NCBI HuRef CHM1_1 3 10,807,894 - 10,930,156 (+) NCBI CHM1_1 T2T-CHM13v2.0 3 10,810,506 - 10,935,188 (+) NCBI T2T-CHM13v2.0
Slc6a11 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 4 148,853,557 - 148,968,895 (+) NCBI GRCr8 mRatBN7.2 4 147,297,972 - 147,413,319 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 4 147,297,969 - 147,413,443 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 4 152,683,360 - 152,799,077 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 4 148,464,228 - 148,579,951 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 4 147,093,650 - 147,209,370 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 4 146,106,386 - 146,223,228 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 146,106,386 - 146,223,228 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 4 209,399,633 - 209,516,846 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 4 150,067,441 - 150,196,237 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 4 150,312,278 - 150,441,202 (+) NCBI Celera 4 135,850,824 - 135,965,196 (+) NCBI Celera Cytogenetic Map 4 q42 NCBI
Slc6a11 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955429 13,774,455 - 13,880,690 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955429 13,774,455 - 13,880,690 (+) NCBI ChiLan1.0 ChiLan1.0
SLC6A11 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 2 10,813,514 - 10,938,397 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 3 10,818,275 - 10,943,122 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 3 10,753,412 - 10,878,333 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 3 11,101,054 - 11,225,277 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 3 11,101,336 - 11,222,948 (+) Ensembl panpan1.1 panPan2
SLC6A11 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 20 7,431,015 - 7,559,903 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 20 7,433,194 - 7,560,564 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 20 7,466,514 - 7,595,315 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 20 7,461,064 - 7,589,938 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 20 7,461,068 - 7,590,345 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 20 7,177,316 - 7,306,087 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 20 7,533,511 - 7,658,605 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 20 7,505,503 - 7,630,735 (-) NCBI UU_Cfam_GSD_1.0
Slc6a11 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404942 16,345,399 - 16,469,940 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936602 2,439,813 - 2,564,313 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936602 2,437,653 - 2,564,309 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SLC6A11 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 66,998,336 - 67,115,907 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 66,998,113 - 67,115,918 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 74,203,510 - 74,218,549 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SLC6A11 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 22 46,857,117 - 46,978,652 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 22 46,857,569 - 46,978,088 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666041 119,545,103 - 119,668,158 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Slc6a11
.
Predicted Target Of
Count of predictions: 981 Count of miRNA genes: 500 Interacting mature miRNAs: 601 Transcripts: ENSMUST00000032451 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
10043864 T2dm4sa_m type 2 diabetes mellitus 4 in SMXA RI mice (mouse) Not determined 6 83690851 146954059 Mouse 11252138 Clas1_m carcinogen-induced lung adenoma susceptibility 1 (mouse) 6 112246918 146954059 Mouse 8552704 Cia43_m collagen induced arthritis QTL 43 (mouse) Not determined 6 114159241 119737532 Mouse 1300887 Pabr1_m plasma apolipoprotein B (human) regulator 1 (mouse) Not determined 6 103754405 136400690 Mouse 1301915 Chab3_m cholesterol absorption 3 (mouse) Not determined 6 98908709 132916997 Mouse 10043923 Bhr7_m bronchial hyperresponsiveness 7 (mouse) Not determined 6 98219814 132219938 Mouse 4141940 W6q5_m weight 6 weeks QTL 5 (mouse) Not determined 96632912 146535124 Mouse 4142259 Tabw2_m tally ho associated body weight 2 (mouse) Not determined 46912919 136400690 Mouse 25314319 Histh6_m histamine hypersensitivity 6 (mouse) 6 48696934 125336963 Mouse 12792979 Fbmd2_m femoral bone mineral density 2, females only (mouse) 6 75026989 115026943 Mouse 25314320 Histh5_m histamine hypersensitivity 5 (mouse) 6 48696934 148351498 Mouse 1301509 Sluc3_m susceptibility to lung cancer 3 (mouse) Not determined 6 104480321 127019938 Mouse 1301962 Eila2_m ethanol induced locomotor activity 2 (mouse) Not determined 6 48703490 125333748 Mouse 1301262 Gasa3_m gastritis type A susceptibility locus 3 (mouse) Not determined 6 88982366 122982564 Mouse 1301518 Bbaa5_m B.burgdorferi-associated arthritis 5 (mouse) Not determined 6 98483798 145881170 Mouse 11353842 Bmiq4_m body mass index QTL 4 (mouse) 6 92584287 146330736 Mouse 1302131 Bmd8_m bone mineral density 8 (mouse) Not determined 6 99132089 133132228 Mouse 10412157 Fl1n_m fatty liver 1 in NSY (mouse) Not determined 6 45290993 128811995 Mouse 11251720 Ewc4_m ethanol withdrawal and consumption 4 (mouse) 6 84099474 118099474 Mouse 1301744 Hdlq11_m HDL QTL 11 (mouse) Not determined 6 87480321 121480516 Mouse 25440480 Moaq2_m modifier of alien QTL 2 (mouse) 6 3050001 117476961 Mouse 26884414 Bzwq12_m bi-zygomatic width QTL 12, 16 week (mouse) 6 3400000 139076998 Mouse 1357683 Igf1sl1_m IGF-1 serum levels 1 (mouse) Not determined 6 52138693 116132228 Mouse 1357555 Tesq2_m testis weight QTL 2 (mouse) Not determined 6 96632912 146535124 Mouse 10043891 Tilss4_m TNF-induced lethal shock susceptibility 3 (mouse) Not determined 6 112246918 125333748 Mouse 1301244 Ichs_m immediate cutaneous hypersensitivity QTL (mouse) Not determined 6 90772571 124772807 Mouse 4142416 Egq11_m early growth QTL 11 (mouse) Not determined 96632912 146535124 Mouse 1301923 Lith6_m lithogenic gene 6 (mouse) Not determined 6 98694477 132694676 Mouse 10412207 Cypr5_m cytokine production 5 (mouse) Not determined 6 110815180 144815323 Mouse 1300704 Cia3_m collagen induced arthritis QTL 3 (mouse) Not determined 6 96324286 130324483 Mouse 13463481 Mcvq14_m mean corpuscular volume QTL 14 (mouse) 6 111142448 145142541 Mouse 1357793 Pnhdlc1_m plasma non-HDL cholesterol 1 (mouse) Not determined 6 105541783 114345810 Mouse 1357806 Aaj3_m anxiety in A/J 3 (mouse) Not determined 6 104480321 136400690 Mouse 13506930 Recrq9_m recombination rate in male meiosis QTL 9 (mouse) 6 73476983 134676963 Mouse 4141699 Ibdq2_m inflammatory bowel disease QTL 2 (mouse) Not determined 105982366 120894102 Mouse 4141376 Dbm1_m diabetes modifier 1 (mouse) Not determined 6 78606487 121092347 Mouse 1301292 Cfbw2_m cystic fibrosis body weight 2 (mouse) Not determined 6 94981612 128981699 Mouse 11040599 Lmr4b_m leishmaniasis resistance 4b (mouse) 6 96324286 130324483 Mouse
Slc6a11
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 6 E3 UniSTS cM Map 6 49.6 UniSTS
D6Mit329
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 114,182,280 - 114,182,454 UniSTS GRCm38 MGSCv37 6 114,132,274 - 114,132,448 UniSTS GRCm37 Celera 6 116,003,300 - 116,003,474 UniSTS Cytogenetic Map 6 E3 UniSTS cM Map 6 50.5 UniSTS Whitehead Genetic 6 47.0 UniSTS Whitehead/MRC_RH 6 1173.03 UniSTS Whitehead_YAC 6 UniSTS
D6Mit383
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 114,135,752 - 114,135,842 UniSTS GRCm38 MGSCv37 6 114,085,746 - 114,085,836 UniSTS GRCm37 Celera 6 115,956,840 - 115,956,930 UniSTS Cytogenetic Map 6 E3 UniSTS cM Map 6 48.0 UniSTS Whitehead_YAC 6 UniSTS
Gabt4
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 114,249,716 - 114,249,913 UniSTS GRCm38 MGSCv37 6 114,199,710 - 114,199,907 UniSTS GRCm37 Celera 6 116,070,720 - 116,070,917 UniSTS Cytogenetic Map 6 E3 UniSTS cM Map 6 49.6 UniSTS
Gabt4
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 114,247,746 - 114,248,083 UniSTS GRCm38 MGSCv37 6 114,197,740 - 114,198,077 UniSTS GRCm37 Celera 6 116,068,749 - 116,069,086 UniSTS Cytogenetic Map 6 E3 UniSTS cM Map 6 49.6 UniSTS
Slc6a11
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 6 E3 UniSTS
Slc6a11
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 6 E3 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000032451 ⟹ ENSMUSP00000032451
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 6 114,108,202 - 114,226,913 (+) Ensembl GRCm38.p6 Ensembl 6 114,131,241 - 114,249,952 (+) Ensembl
Ensembl Acc Id:
ENSMUST00000203105
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 6 114,108,380 - 114,109,396 (+) Ensembl GRCm38.p6 Ensembl 6 114,131,419 - 114,132,435 (+) Ensembl
RefSeq Acc Id:
NM_172890 ⟹ NP_766478
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 6 114,108,202 - 114,226,847 (+) NCBI GRCm38 6 114,131,241 - 114,249,886 (+) ENTREZGENE MGSCv37 6 114,081,235 - 114,199,880 (+) RGD Celera 6 115,952,329 - 116,070,890 (+) RGD cM Map 6 ENTREZGENE
Sequence:
AGAGCCGGGGCCGGCGCACGAGGCGGCAGGGCGGCCATGACTGCGGAGCAAGCGCTGCCCCTGGGCAACGGGAAAGCGGCCGAGGAGGCGCGGGGGTCCGAGACGCTGGGCGGCGGCGGCGGGGGCGC
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RefSeq Acc Id:
NP_766478 ⟸ NM_172890
- UniProtKB:
Q8BWA7 (UniProtKB/Swiss-Prot), P31650 (UniProtKB/Swiss-Prot), Q8BKG0 (UniProtKB/TrEMBL)
- Sequence:
MTAEQALPLGNGKAAEEARGSETLGGGGGGAAGTREARDKAVHERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRRVCPLFEGIG
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Ensembl Acc Id:
ENSMUSP00000032451 ⟸ ENSMUST00000032451
RGD ID: 6890688 Promoter ID: EPDNEW_M8795 Type: multiple initiation site Name: Slc6a11_1 Description: Mus musculus solute carrier family 6 (neurotransmitter transporter,GABA), member 11 , mRNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 6 114,131,239 - 114,131,299 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2024-08-26
Slc6a11
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Gabt4
gamma-aminobutyric acid (GABA-A) transporter 4
Symbol and/or name updated
27372883 PROVISIONAL
2024-08-21
Gabt4
gamma-aminobutyric acid (GABA-A) transporter 4
Slc6a11
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Symbol and/or name change
5135510 APPROVED
2016-02-26
Slc6a11
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Gabt4
Data merged from RGD:732373
737654 PROVISIONAL
