Pnhdlc1_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Pnhdlc1_m (plasma non-HDL cholesterol 1 (mouse)) Mus musculus

Symbol: Pnhdlc1_m
Name: plasma non-HDL cholesterol 1 (mouse)
RGD ID: 1357793
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386105,564,822 - 114,368,849MOUSEQTLGRCm38
cM Map6syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. Mouse Genome Database (MGD)
2. RGD automated import pipeline
Additional References at PubMed
PMID:12810823   PMID:18048852  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321331Setd5SET domain containing 56113077262113153432Mouse
11485Vhlvon Hippel-Lindau tumor suppressor6113623994113631634Mouse
1319044Lmcd1LIM and cysteine-rich domains 16112273758112330423Mouse
732655Ghrlghrelin6113716119113719911Mouse
11041Oxtroxytocin receptor6112473683112491035Mouse
735906Cav3caveolin 36112459505112472872Mouse
68660Bhlhe40basic helix-loop-helix family, member e406108660629108666925Mouse
1315924Rad18RAD18 E3 ubiquitin protein ligase6112619851112696691Mouse
1316706Brpf1bromodomain and PHD finger containing, 16113306863113324862Mouse
1320804Arpc4actin related protein 2/3 complex, subunit 46113378113113390447Mouse
1332121Emc3ER membrane protein complex subunit 36113514887113531638Mouse
1557646Ssu2ssu-2 homolog (C. elegans)6112359322112388199Mouse
1553352Sumf1sulfatase modifying factor 16108107021108185591Mouse
1557270Cideccell death-inducing DFFA-like effector c6113424634113435760Mouse
1557097Srgap3SLIT-ROBO Rho GTPase activating protein 36112717971112947505Mouse
1551256Creld1cysteine-rich with EGF-like domains 16113483356113493343Mouse
1557813Edem1ER degradation enhancer, mannosidase alpha-like 16108824045108859356Mouse
1557347Grm7glutamate receptor, metabotropic 76110645349111567230Mouse
1551562Crbncereblon6106778244106800099Mouse
1558346SetmarSET domain without mariner transposase fusion6108065045108077127Mouse
1558347Thumpd3THUMP domain containing 36113046302113068278Mouse
1557910Slc6a11solute carrier family 6 (neurotransmitter transporter, GABA), member 116114131241114249886Mouse
16073810610040F04RikRIKEN cDNA 0610040F04 gene6108577036108660934Mouse
1557806Trnt1tRNA nucleotidyl transferase, CCA-adding, 16106769138106782474Mouse
16088441700054K19RikRIKEN cDNA 1700054K19 gene6112210708112212519Mouse
16091194833447P13RikRIKEN cDNA 4833447P13 gene6108657906108659913Mouse
1615775Rpusd3RNA pseudouridylate synthase domain containing 36113415319113419348Mouse
1615777Ttll3tubulin tyrosine ligase-like family, member 36113389260113414592Mouse
1332381Mtmr14myotubularin related protein 146113237635113281392Mouse
1614712Gm5578predicted pseudogene 55786112605405112608797Mouse
1616408Tatdn2TatD DNase domain containing 26113697050113711082Mouse
731476Slc6a1solute carrier family 6 (neurotransmitter transporter, GABA), member 16114282635114317525Mouse
1550802Sec13SEC13 homolog, nuclear pore and COPII coat complex component6113728052113740681Mouse
1614238Brk1BRICK1, SCAR/WAVE actin-nucleating complex subunit6113604772113616951Mouse
1314885Tada3transcriptional adaptor 36113366633113377838Mouse
1619206Il17reinterleukin 17 receptor E6113458699113470758Mouse
1320000Irak2interleukin-1 receptor-associated kinase 26113638467113695026Mouse
10821Itpr1inositol 1,4,5-trisphosphate receptor 16108213083108551116Mouse
1617822Gm6749predicted pseudogene 67496108880794108882707Mouse
1615723Fancd2Fanconi anemia, complementation group D26113531640113597020Mouse
1618205Il17rcinterleukin 17 receptor C6113471455113483163Mouse
1618840Lhfpl4lipoma HMGIC fusion partner-like protein 46113168087113195384Mouse
735277Cntn4contactin 46105677632106700141Mouse
1618323Fancd2osFancd2 opposite strand6113596761113600715Mouse
1319429Cpne9copine family member IX6113282283113305571Mouse
1557811Arl8bADP-ribosylation factor-like 8B6108783059108823723Mouse
1623204Jagn1jagunal homolog 16113442517113448229Mouse
735922Il5rainterleukin 5 receptor, alpha6106710375106749037Mouse
1623832Prrt3proline-rich transmembrane protein 36113493638113502082Mouse
1557480Lrrn1leucine rich repeat protein 1, neuronal6107529726107570228Mouse
731619Camk1calcium/calmodulin-dependent protein kinase I6113334124113343922Mouse
10211Atp2b2ATPase, Ca++ transporting, plasma membrane 26113743831114042613Mouse
1623518Gm6134predicted pseudogene 61346112976182112976469Mouse
732766Ogg18-oxoguanine DNA-glycosylase 16113326972113334877Mouse
2299288Rpl36-ps12ribosomal protein L36, pseudogene 126108140120108140509Mouse
2295624Gm16433predicted gene 164336108563449108565693Mouse
2294454Gm6064predicted gene 60646107093457107094222Mouse
2294530Gm8132predicted gene 81326114168755114169635Mouse
2299022Gm15519predicted gene 155196112563582112566310Mouse
2309720Gm8083predicted gene 80836112992121112992599Mouse
2303939Gt(ROSA)26Sorgene trap ROSA 26, Philippe Soriano6113067428113077244Mouse
2309128Gm4605predicted gene 46056109443600109444226Mouse
3739917Vmn1r-ps38vomeronasal 1 receptor, pseudogene 386107864522107865343Mouse
3739918Vmn1r-ps37vomeronasal 1 receptor, pseudogene 376107863308107863746Mouse
5142513Gm19039predicted gene, 190396110378080110378628Mouse
5142530Gm19021predicted gene, 190216112897223112897876Mouse
5142374Gm19177predicted gene, 191776107881092107881673Mouse
5683795Gm20589predicted gene, 205896113352638113354042Mouse
56864635031434C07RikRIKEN cDNA 5031434C07 gene6112286794112290319Mouse
9629092Gm15083predicted gene 150836114004756114052267Mouse
9630183Gm35359predicted gene, 353596108717531108731381Mouse
9630527Gm35764predicted gene, 357646112612163112613426Mouse
9632810Gm35017predicted gene, 350176107802725107815057Mouse
9637193Mir7042microRNA 70426113707208113707265Mouse
9609309Gm35824predicted gene, 358246112696668112698487Mouse
9615242Gm35467predicted gene, 354676109739812109750328Mouse
9594660Gm35649predicted gene, 356496112462668112463624Mouse
9602235Gm20387predicted gene 203876110627715110645400Mouse
9604013Gm35165predicted gene, 351656108450932108472606Mouse
9672667Gm15631predicted gene 156316105672338105677581Mouse
9677723Gm35417predicted gene, 354176108802410108828276Mouse
9669725Mir7661microRNA 76616108489743108489803Mouse
9652647Gm34933predicted gene, 349336107182063107194586Mouse
9662628Gm29781predicted gene, 297816109125516109126254Mouse
9663516Gm32858predicted gene, 328586109203981109214861Mouse
9656456Gm35706predicted gene, 357066112541763112546264Mouse
9643463Gm34873predicted gene, 348736106972266106994666Mouse
9645104Gm36023predicted gene, 360236114094350114098987Mouse
10013596Gm38872predicted gene, 388726108212256108212918Mouse
9999941Gm26799predicted gene, 267996112699780112704164Mouse
10019415Gm38875predicted gene, 388756114356190114397751Mouse
10017718Gm38874predicted gene, 388746113578385113586203Mouse
10035473Gm40395predicted gene, 403956112422733112424511Mouse
10036298Gm38873predicted gene, 388736112390396112398174Mouse
11576483Gm44336predicted gene, 443366112393347112393851Mouse
12793198Gm46971predicted gene, 469716113575770113577013Mouse
12793202Gm46972predicted gene, 469726114272429114277114Mouse
12793501Gm46982predicted gene, 469826113068985113077229Mouse
14997567Gm43868predicted gene, 438686113044035113046171Mouse
15022611Gm52871predicted gene, 528716113434505113437598Mouse
15018269Gm52872predicted gene, 528726113467953113469604Mouse
15017742Gm52916predicted gene, 529166114164356114165393Mouse
15002705Gm22418predicted gene, 224186107001452107001558Mouse
15002715Gm23244predicted gene, 232446113035841113035934Mouse
15000597Gm44040predicted gene, 440406108519029108535755Mouse
15001759Gm23002predicted gene, 230026112592967112593073Mouse
15554528Gm22591predicted gene, 225916113060698113060803Mouse
39130117LOC108169181uncharacterized LOC1081691816112717971112721442Mouse
39131012LOC110120474VISTA enhancer mm14806112808528112813000Mouse
39130237Gm51409predicted gene, 514096108791142108812508Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
4895079BB407082886113304724113304811Mouseregion
4895067AI2671181096108609732108609840Mouseregion
4895081BB284401986113366322113366419Mouseregion
4903921AI4500501326113399133113399264Mouseregion
4903929AW2604161036113515120113515222Mouseregion
4903931AI6460121186113710932113711049Mouseregion
4903933AI6490991326113694255113694386Mouseregion
7193697Slc6a18706114316118114316987Mouseregion
4895077AI0362851056113064502113064606Mouseregion
4895083AU0151512356113596024113596258Mouseregion
4900202RH1275252026106779002106779203Mouseregion
4900065RH1365912006113095406113095605Mouseregion
4900085RH1366001916113071153113071343Mouseregion
4900762RH1302041836113067886113068068Mouseregion
4901011RH1318682016112718201112718401Mouseregion
4898917RH1359991456113515244113515388Mouseregion
4903917AW556087816113067942113068022Mouseregion
4903919AW4555001186112330220112330337Mouseregion
4903923AI327076816113388936113389016Mouseregion
4903925AV2588961456113070469113070613Mouseregion
4900569RH1293251776108859134108859310Mouseregion
4900643RH1295891806113448006113448185Mouseregion
4903909AI8515731156108107330108107444Mouseregion
4903911AW108261836106780569106780651Mouseregion
4902054AI987788896106782334106782422Mouseregion
491492329.MHAa64g5.seq1566107576932107577085Mouseregion
491624343.MMHAP59FLG4.seq1536113808353113808505Mouseregion
4917796MHAa70g1.seq1726112675910112676081Mouseregion
4918120MHAa97b9.seq1666113707296113707461Mouseregion
4908285BB137857806113596886113596965Mouseregion
4909459M-107011666109911016109911181Mouseregion
4911010Oxtr6626112489114112489775Mouseregion
491363314.MMHAP17FE2.seq1786108137648108137825Mouseregion
491609541.MMHAP80FLF5.seq1696113410226113410394Mouseregion
491613742.MHAa96d6.seq1536111227818111227971Mouseregion
491533333.MMHAP69FLC6.seq1686108305134108305301Mouseregion
491601141.MHAa63d5.seq1516107473641107473791Mouseregion
4908279D45913816107569755107569835Mouseregion
4918988X990431986106674045106674241Mouseregion
4908281BB1766771296111567014111567142Mouseregion
4917996MHAa84g5.seq1666107323339107323504Mouseregion
491342511.MMHAP90FRD8.seq1246112026777112026900Mouseregion
491446523.MMHAP7FLH2.seq1636108464172108464334Mouseregion
491503530.MMHAP28FRB12.seq1986112741086112741283Mouseregion
491537534.MMHAP12FRD10.seq1996107932183107932382Mouseregion
491546534.MMHAP88FRD10.seq1846113829614113829797Mouseregion
4946763UniSTS:2355232106113631191113631400Mouseregion
4946765UniSTS:2355202396113071064113071302Mouseregion
4946767UniSTS:2355192096112563617112563825Mouseregion
4946753UniSTS:2355152476108859027108859273Mouseregion
4946755UniSTS:2355141576108565163108565319Mouseregion
4928276D6Mit1041446110959922110960065Mouseregion
4928363D6Mit1481396110784293110784431Mouseregion
4928365D6Mit1491996106005405106005603Mouseregion
4928734D6Mit3271256109332676109332800Mouseregion
4928772D6Mit352226107426421107426642Mouseregion
4928824D6Mit372506105564822105565071Mouseregion
4928844D6Mit383916114135752114135842Mouseregion
4928857D6Mit391406106569226106569365Mouseregion
4933132AI4631022316108107124108107354Mouseregion
4933146AI5051051336113334193113334325Mouseregion
4933140AI385751976112472525112472621Mouseregion
4946757UniSTS:23551606108857388108857636Mouseregion
4937034RH1247061296106782202106782330Mouseregion
4937581RH1249792316108845982108846212Mouseregion
4937595RH124987816113470052113470132Mouseregion
4928280D6Mit1081276111324400111324526Mouseregion
4928282D6Mit1071496112533607112533755Mouseregion
4928639D6Mit2861186106450231106450346Mouseregion
4928645D6Mit287886112004651112004738Mouseregion
4928834D6Mit3781256113208786113208910Mouseregion
4928883D6Mit541856112269957112270141Mouseregion
4928900D6Mit631186114368732114368849Mouseregion
4928445D6Mit1921926106058834106059025Mouseregion
4928525D6Mit231386112581750112581887Mouseregion
4928738D6Mit3281256112779350112779474Mouseregion
4928740D6Mit3291756114182280114182454Mouseregion
4928855D6Mit3891426112094529112094670Mouseregion
4928885D6Mit551106114282098114282207Mouseregion
4941992Slc6a12506114307709114308580Mouseregion
4942014Srgap311246112722075112723198Mouseregion
4942915D6Dcr231016110045948110046048Mouseregion
4933144AW5537381386113280950113281087Mouseregion
4933136D902051226106711966106712087Mouseregion
493313811.MMHAP84FLD2.seq1056109859648109859752Mouseregion
4933142AI4523371986112719658112719855Mouseregion
4946759UniSTS:2355171166112315628112315743Mouseregion
4946761UniSTS:235518926112472606112472697Mouseregion
4957546AI8438111166113492967113493082Mouseregion
4957548AI9878561206113366882113367001Mouseregion
4957550AI527266986113415479113415576Mouseregion
4959217AW0117791156113616606113616720Mouseregion
4961743D6Ertd263e2256113334160113334384Mouseregion
4951709AI0712302006112330150112330349Mouseregion
4952483PMC117179P17316113370237113370967Mouseregion
4963108UniSTS:2242371866109160918109161103Mouseregion
4953129PMC150244P15926113070831113071422Mouseregion
4954201D6Mit1052376107795610107795846Mouseregion
4964727UniSTS:2251211826108739197108739378Mouseregion
4966109BF4150922256113495605113495829Mouseregion
4959215AW1464381486113447806113447953Mouseregion
4962153RH1346211976113616656113616852Mouseregion
4951060UniSTS:238061886113374849113375060Mouseregion
4962888RH1414151926113775538113775729Mouseregion
4963687UniSTS:2245511806109278437109278616Mouseregion
4964300UniSTS:2248831626108593709108593870Mouseregion
4955363RH1259922336106782216106782448Mouseregion
4956657U12570846113629711113629794Mouseregion
4967887px-35d41816111379086111379268Mouseregion
4957544AI6048801376113168136113168272Mouseregion
5003435RH1021211346112606552112606685Mouseregion
5009261D6Mit301826114070456114070638Mouseregion
5009263D6Mit3431396111612087111612225Mouseregion
5009265D6Mit3441456108969344108969488Mouseregion
4980108PMC262394P24066113721525113721930Mouseregion
4972318D6Oda192436112893351112893593Mouseregion
4972320D6Oda201516113098035113098185Mouseregion
5005548D3S2930E2006113747441113747640Mouseregion
5002196D6Mit1006113347325113347522Mouseregion
5010253Fsp271596113424693113424851Mouseregion
5004308G66214786113110381113110458Mouseregion
5005255GRM7_13887696111566440111567208Mouseregion
5010269Gabt12846114317206114317490Mouseregion
5010276Gabt41976114249716114249913Mouseregion
5010278Gabt41976114247746114248083Mouseregion
5005747PMC170950P13906112489110112489499Mouseregion
5002720stSG63350706108620304108621615Mouseregion
5012667Vhlh2146113630184113630397Mouseregion
4979304Crbn1016106794293106795050Mouseregion
5010969Itpr11266108550828108550953Mouseregion
4970761Atp2b2926113746120113746211Mouseregion
4971394Il5ra2766106712068106712343Mouseregion
4972328D6Oda261866114367221114367406Mouseregion
4972332D6Oda331466113920848113920993Mouseregion
4972334D6Oda371606113896888113897047Mouseregion
5011646Ogg11636113331816113333367Mouseregion
4972324D6Oda231436113717974113718116Mouseregion
4972326D6Oda241466114024174114024319Mouseregion
4973432Lrrn19826107567480107568461Mouseregion
4980025PMC23053P12166113629392113629607Mouseregion
4980027PMC23053P21106113624245113624354Mouseregion
4980110PMC262394P19106113716246113717155Mouseregion
5001381RH127371306113151690113151819Mouseregion
5002198D6Mit11936113544509113544602Mouseregion
5003429G436641286113743853113743980Mouseregion
5004400D3S39901766113748535113748710Mouseregion
4983590PMC316374P34796112490781112491259Mouseregion
4979721PMC194856P14196113537489113537907Mouseregion
4979743PMC196256P13346113570837113571170Mouseregion
4980112PMC262394P32746113719112113719385Mouseregion
5494717MARC_26162-26163:1030455175:17016113370306113371006Mouseregion
5495600UniSTS:48496512006112488598112489797Mouseregion
5494315UniSTS:2346862046113728378113729713Mouseregion
5494477RH4475815636111081535111083097Mouseregion
5494437stSG6216149586107233839107234796Mouseregion

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1300958Tmevd1_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1 (mouse)Not determined6104503360106005603Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110838217144838360Mouse
12910774Hcga4c_mhome cage activity 4c (mouse)6110959922112581887Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111165485145165578Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112269957125356785Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112269957147052561Mouse
8552704Cia43_mcollagen induced arthritis QTL 43 (mouse)Not determined6114182280119760571Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114368732145656013Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:3525295

RGD Curation Notes
Note Type Note Reference