Nup62 (nucleoporin 62) - Rat Genome Database

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Gene: Nup62 (nucleoporin 62) Mus musculus
Analyze
Symbol: Nup62
Name: nucleoporin 62
RGD ID: 1557886
MGI Page MGI
Description: Enables Hsp70 protein binding activity; Hsp90 protein binding activity; and PTB domain binding activity. Involved in negative regulation of cell population proliferation and negative regulation of signal transduction. Acts upstream of or within cellular senescence. Located in nuclear membrane. Part of nuclear pore. Is expressed in several structures, including brain; genitourinary system; gut; hemolymphoid system; and integumental system. Human ortholog(s) of this gene implicated in primary biliary cholangitis and striatonigral degeneration. Orthologous to human NUP62 (nucleoporin 62).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 62 kDa nucleoporin; AA589433; AI426861; AI790512; AU045898; D7Ertd649; D7Ertd649e; MGC101995; nuclear pore complex 1; nuclear pore glycoprotein p62; nucleoporin Nup62; Nup; Nupc1; p6; p62
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,465,512 - 44,481,260 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,465,512 - 44,480,236 (+)EnsemblGRCm39 Ensembl
GRCm38744,816,088 - 44,831,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,816,088 - 44,830,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,071,790 - 52,086,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,684,462 - 44,698,849 (+)NCBIMGSCv36mm8
Celera740,266,716 - 40,281,098 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3-chloropropane-1,2-diol  (ISO)
6-propyl-2-thiouracil  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
auramine O  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenthion  (EXP)
folic acid  (EXP)
folpet  (EXP)
furan  (ISO)
gentamycin  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
leflunomide  (ISO)
leptomycin B  (ISO)
lycopene  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
Nutlin-3  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylephrine  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tauroursodeoxycholic acid  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thiram  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Profile and clinical significance of anti-nuclear envelope antibodies found in patients with primary biliary cirrhosis: a multicenter study. Miyachi K, etal., J Autoimmun. 2003 May;20(3):247-54.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1915419   PMID:7671812   PMID:8889548   PMID:10349636   PMID:10543952   PMID:10922068   PMID:11031258   PMID:11042159   PMID:11076861   PMID:11489947   PMID:11579093   PMID:12477932  
PMID:12791264   PMID:14697343   PMID:15489334   PMID:15572682   PMID:15782199   PMID:15820316   PMID:16141072   PMID:16141073   PMID:18469803   PMID:18539113   PMID:18809582   PMID:19581287  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22683860   PMID:24107630   PMID:24194600   PMID:25349423   PMID:26510501   PMID:30022050   PMID:32325033   PMID:32554220   PMID:34571994  
PMID:36878279   PMID:36908815   PMID:37620146   PMID:37802024   PMID:38355793  


Genomics

Comparative Map Data
Nup62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,465,512 - 44,481,260 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,465,512 - 44,480,236 (+)EnsemblGRCm39 Ensembl
GRCm38744,816,088 - 44,831,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,816,088 - 44,830,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,071,790 - 52,086,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,684,462 - 44,698,849 (+)NCBIMGSCv36mm8
Celera740,266,716 - 40,281,098 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.93NCBI
NUP62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,906,825 - 49,929,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,906,825 - 49,929,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,410,082 - 50,432,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,101,894 - 55,124,598 (-)NCBINCBI36Build 36hg18NCBI36
Build 341955,101,893 - 55,124,598NCBI
Celera1947,279,595 - 47,302,503 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,786,417 - 46,809,243 (-)NCBIHuRef
CHM1_11950,411,926 - 50,434,816 (-)NCBICHM1_1
T2T-CHM13v2.01952,906,960 - 52,929,639 (-)NCBIT2T-CHM13v2.0
Nup62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,435,532 - 104,451,392 (+)NCBIGRCr8
mRatBN7.2195,298,995 - 95,314,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,295,526 - 95,315,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,684,924 - 100,700,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,157,589 - 109,172,951 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,447,996 - 102,463,359 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,811,140 - 100,827,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,811,755 - 100,827,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,876,161 - 101,891,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,288,019 - 95,303,545 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,378,221 - 95,382,015 (+)NCBI
Celera189,561,555 - 89,576,634 (+)NCBICelera
Cytogenetic Map1q22NCBI
Nup62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,030,894 - 1,032,462 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,012,919 - 1,033,465 (+)NCBIChiLan1.0ChiLan1.0
NUP62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,022,278 - 56,044,867 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,943,134 - 57,965,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,919,731 - 46,942,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,835,593 - 55,858,165 (-)NCBIpanpan1.1PanPan1.1panPan2
NUP62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,636,282 - 106,661,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,219,723 - 106,244,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,157,688 - 107,182,656 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,157,675 - 107,182,663 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,829,847 - 106,854,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,472,003 - 106,496,982 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,312,293 - 107,337,261 (+)NCBIUU_Cfam_GSD_1.0
Nup62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,072,538 - 22,095,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,690,567 - 3,713,719 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,690,728 - 3,713,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,921,627 - 54,923,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,921,627 - 54,945,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,696,590 - 50,727,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,063,483 - 43,086,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,064,875 - 43,066,440 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,038,779 - 23,061,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,404,245 - 4,428,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,404,367 - 4,428,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:694
Count of miRNA genes:332
Interacting mature miRNAs:370
Transcripts:ENSMUST00000057195, ENSMUST00000107891, ENSMUST00000136861
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74422494344675382Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
25394574Skmw61_mskeletal muscle weight 61, EDL (mouse)74422494344675382Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse

Markers in Region
AI426861  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,831,558 - 44,831,652UniSTSGRCm38
MGSCv37752,086,928 - 52,087,022UniSTSGRCm37
Celera740,281,849 - 40,281,943UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
Whitehead/MRC_RH7560.55UniSTS
AI790512  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,830,526 - 44,830,637UniSTSGRCm38
MGSCv37752,085,896 - 52,086,007UniSTSGRCm37
Celera740,280,817 - 40,280,928UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
Whitehead/MRC_RH7560.55UniSTS
AU045898  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,831,445 - 44,831,652UniSTSGRCm38
MGSCv37752,086,815 - 52,087,022UniSTSGRCm37
Celera740,281,736 - 40,281,943UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
Whitehead/MRC_RH7558.8UniSTS
RH124961  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,830,528 - 44,830,627UniSTSGRCm38
MGSCv37752,085,898 - 52,085,997UniSTSGRCm37
Celera740,280,819 - 40,280,918UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
UniSTS:235658  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,829,296 - 44,829,523UniSTSGRCm38
MGSCv37752,084,666 - 52,084,893UniSTSGRCm37
Celera740,279,587 - 40,279,814UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
AU015239  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,830,537 - 44,830,747UniSTSGRCm38
MGSCv37752,085,907 - 52,086,117UniSTSGRCm37
Celera740,280,828 - 40,281,038UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.1UniSTS
Whitehead/MRC_RH7562.61UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S59342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000057195   ⟹   ENSMUSP00000056785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,465,512 - 44,480,236 (+)Ensembl
GRCm38.p6 Ensembl744,816,088 - 44,830,812 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207085   ⟹   ENSMUSP00000147215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,467,861 - 44,478,112 (+)Ensembl
GRCm38.p6 Ensembl744,818,437 - 44,828,688 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207103   ⟹   ENSMUSP00000147181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,465,807 - 44,480,228 (+)Ensembl
GRCm38.p6 Ensembl744,816,383 - 44,830,804 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208172   ⟹   ENSMUSP00000147109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,465,724 - 44,478,465 (+)Ensembl
GRCm38.p6 Ensembl744,816,300 - 44,829,041 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208626   ⟹   ENSMUSP00000146695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,465,512 - 44,480,233 (+)Ensembl
GRCm38.p6 Ensembl744,816,088 - 44,830,809 (+)Ensembl
RefSeq Acc Id: NM_053074   ⟹   NP_444304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,465,512 - 44,481,260 (+)NCBI
GRCm38744,816,088 - 44,831,836 (+)NCBI
MGSCv37752,071,790 - 52,086,177 (+)RGD
Celera740,266,716 - 40,281,098 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_444304   ⟸   NM_053074
- UniProtKB: Q99JN7 (UniProtKB/Swiss-Prot),   Q63850 (UniProtKB/Swiss-Prot),   Q5FWJ9 (UniProtKB/TrEMBL),   Q3THR9 (UniProtKB/TrEMBL),   Q3U2X1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000146695   ⟸   ENSMUST00000208626
Ensembl Acc Id: ENSMUSP00000147109   ⟸   ENSMUST00000208172
Ensembl Acc Id: ENSMUSP00000147181   ⟸   ENSMUST00000207103
Ensembl Acc Id: ENSMUSP00000147215   ⟸   ENSMUST00000207085
Ensembl Acc Id: ENSMUSP00000056785   ⟸   ENSMUST00000057195
Protein Domains
Nucleoporin NSP1-like C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63850-F1-model_v2 AlphaFold Q63850 1-526 view protein structure

Promoters
RGD ID:6840681
Promoter ID:MM_KWN:50294
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107891,   NM_030693,   OTTMUST00000049972,   OTTMUST00000073033,   UC009GQX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,069,866 - 52,072,047 (-)MPROMDB
RGD ID:6841667
Promoter ID:MM_KWN:50296
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   Liver,   MEF_B6
Transcripts:OTTMUST00000073036
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,072,856 - 52,073,907 (+)MPROMDB
RGD ID:6848182
Promoter ID:MM_ACW:44454
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:NUP62ANDIL4I1.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,084,091 - 52,084,591 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351500 AgrOrtholog
Ensembl Genes ENSMUSG00000109511 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057195 ENTREZGENE
  ENSMUST00000057195.17 UniProtKB/Swiss-Prot
  ENSMUST00000207085.2 UniProtKB/TrEMBL
  ENSMUST00000207103.2 UniProtKB/Swiss-Prot
  ENSMUST00000208172.2 UniProtKB/TrEMBL
  ENSMUST00000208626.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NSP1/NUP62 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_NSP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18226 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1351500 ENTREZGENE
NCBI Gene 18226 ENTREZGENE
PANTHER NUCLEAR PORE GLYCOPROTEIN P62 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12084 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nsp1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup62 PhenoGen
UniProt A0A140LJ77_MOUSE UniProtKB/TrEMBL
  A0A140LJH5_MOUSE UniProtKB/TrEMBL
  NUP62_MOUSE UniProtKB/Swiss-Prot
  Q3TFE2_MOUSE UniProtKB/TrEMBL
  Q3THR9 ENTREZGENE, UniProtKB/TrEMBL
  Q3U2X1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UDG5_MOUSE UniProtKB/TrEMBL
  Q3UGJ7_MOUSE UniProtKB/TrEMBL
  Q5FWJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q63850 ENTREZGENE
  Q99JN7 ENTREZGENE
UniProt Secondary Q99JN7 UniProtKB/Swiss-Prot