Nup62 (nucleoporin 62) - Rat Genome Database

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Gene: Nup62 (nucleoporin 62) Chinchilla lanigera
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Symbol: Nup62
Name: nucleoporin 62
RGD ID: 8812398
Description: ENCODES a protein that exhibits Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); kinesin binding (ortholog); INVOLVED IN cell aging (ortholog); cell death (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH primary biliary cholangitis (ortholog); Striatonigral Degeneration, Infantile (ortholog); FOUND IN annulate lamellae (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear pore glycoprotein p62; nucleoporin 62kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,030,894 - 1,032,462 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,012,919 - 1,033,465 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Nup62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,030,894 - 1,032,462 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,012,919 - 1,033,465 (+)NCBIChiLan1.0ChiLan1.0
NUP62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1949,906,825 - 49,929,763 (-)EnsemblGRCh38hg38GRCh38
GRCh381949,906,825 - 49,929,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371950,410,082 - 50,432,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,101,894 - 55,124,598 (-)NCBINCBI36hg18NCBI36
Build 341955,101,893 - 55,124,598NCBI
Celera1947,279,595 - 47,302,503 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1946,786,417 - 46,809,243 (-)NCBIHuRef
CHM1_11950,411,926 - 50,434,816 (-)NCBICHM1_1
Nup62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,465,512 - 44,481,260 (+)NCBIGRCm39mm39
GRCm39 Ensembl744,465,512 - 44,480,236 (+)Ensembl
GRCm38744,816,088 - 44,831,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,816,088 - 44,830,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,071,790 - 52,086,177 (+)NCBIGRCm37mm9NCBIm37
MGSCv36744,684,462 - 44,698,849 (+)NCBImm8
Celera740,266,716 - 40,281,098 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.93NCBI
Nup62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2195,298,995 - 95,314,902 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl195,295,526 - 95,315,174 (+)Ensembl
Rnor_6.01100,811,140 - 100,827,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,811,755 - 100,827,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,876,161 - 101,891,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,288,019 - 95,303,545 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,378,221 - 95,382,015 (+)NCBI
Celera189,561,555 - 89,576,634 (+)NCBICelera
Cytogenetic Map1q22NCBI
NUP62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11955,835,593 - 55,858,165 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01946,919,731 - 46,942,318 (-)NCBIMhudiblu_PPA_v0panPan3
NUP62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,636,282 - 106,661,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,219,723 - 106,244,693 (+)NCBI
ROS_Cfam_1.01107,157,688 - 107,182,656 (+)NCBI
UMICH_Zoey_3.11106,829,847 - 106,854,818 (+)NCBI
UNSW_CanFamBas_1.01106,472,003 - 106,496,982 (+)NCBI
UU_Cfam_GSD_1.01107,312,293 - 107,337,261 (+)NCBI
Nup62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,072,538 - 22,095,600 (-)NCBI
SpeTri2.0NW_0049366643,690,728 - 3,713,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,921,627 - 54,923,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,921,627 - 54,945,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,696,590 - 50,727,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,063,483 - 43,086,264 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl643,064,875 - 43,066,440 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,038,779 - 23,061,398 (-)NCBIVero_WHO_p1.0
Nup62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,404,367 - 4,428,231 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010457   ⟹   ENSCLAP00000010327
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555591,030,894 - 1,032,462 (+)Ensembl
RefSeq Acc Id: XM_005412811   ⟹   XP_005412868
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,014,140 - 1,033,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005412812   ⟹   XP_005412869
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,013,024 - 1,033,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508966   ⟹   XP_013364420
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,012,919 - 1,033,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508967   ⟹   XP_013364421
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,028,124 - 1,033,465 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412868 (Get FASTA)   NCBI Sequence Viewer  
  XP_005412869 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364420 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364421 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005412869   ⟸   XM_005412812
- Sequence:
RefSeq Acc Id: XP_005412868   ⟸   XM_005412811
- Sequence:
RefSeq Acc Id: XP_013364420   ⟸   XM_013508966
- Sequence:
RefSeq Acc Id: XP_013364421   ⟸   XM_013508967
- Sequence:
RefSeq Acc Id: ENSCLAP00000010327   ⟸   ENSCLAT00000010457


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007138 Ensembl
NCBI Gene Nup62 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Nup62  nucleoporin 62    nucleoporin 62kDa  Symbol and/or name change 5135510 APPROVED