Pou4f2 (POU domain, class 4, transcription factor 2) - Rat Genome Database
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Gene: Pou4f2 (POU domain, class 4, transcription factor 2) Mus musculus
Analyze
Symbol: Pou4f2
Name: POU domain, class 4, transcription factor 2
RGD ID: 1552160
MGI Page MGI
Description: Exhibits several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; p53 binding activity; and promoter-specific chromatin binding activity. Involved in several processes, including animal organ development; generation of neurons; and regulation of transcription, DNA-templated. Localizes to cytoplasm and nuclear euchromatin. Is expressed in several structures, including central nervous system; dorsal root ganglion; glomerular tuft; sensory organ; and trunk. Orthologous to human POU4F2 (POU class 4 homeobox 2); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: brain-3B; brain-specific homeobox/POU domain protein 3B; Brn; Brn-; Brn-3; Brn-3.2; Brn-3b; Brn3b; mBrn3; mBrn3-3R; POU domain, class 4, transcription factor, related sequence 1; Pou4f; Pou4f-rs1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,159,638 - 79,163,276 (-)NCBIGRCm39mm39
GRCm38878,433,009 - 78,436,647 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,433,010 - 78,436,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv37880,956,908 - 80,960,551 (-)NCBIGRCm37mm9NCBIm37
MGSCv36881,329,081 - 81,332,724 (-)NCBImm8
Celera882,709,269 - 82,712,912 (-)NCBICelera
Cytogenetic Map8C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic process  (IEA)
axon extension  (IGI)
axon guidance  (IMP)
axonogenesis  (IMP)
cell differentiation  (IEA)
cellular response to cytokine stimulus  (IDA)
cellular response to estradiol stimulus  (IDA)
cellular response to insulin stimulus  (IMP)
cellular response to oxygen levels  (ISO)
dorsal root ganglion development  (IMP)
heart development  (IGI)
intracellular estrogen receptor signaling pathway  (ISO)
intrinsic apoptotic signaling pathway by p53 class mediator  (IMP)
MAPK cascade  (ISO)
multicellular organism development  (IEA)
negative regulation of adipose tissue development  (IMP)
negative regulation of amacrine cell differentiation  (IMP)
negative regulation of cell differentiation  (IMP)
negative regulation of DNA-binding transcription factor activity  (IDA)
negative regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
neuromuscular process controlling balance  (IGI)
neuron differentiation  (IGI,IMP)
positive regulation of axon extension  (IMP)
positive regulation of cardiac muscle cell apoptotic process  (ISO)
positive regulation of cell differentiation  (IMP)
positive regulation of glucose import  (IMP)
positive regulation of osteoclast differentiation  (IMP)
positive regulation of programmed cell death  (IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,IMP,ISO)
positive regulation of transcription regulatory region DNA binding  (IDA)
regulation of DNA-binding transcription factor activity  (IDA)
regulation of gene expression  (ISO)
regulation of retinal ganglion cell axon guidance  (IMP)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (IEA)
retina development in camera-type eye  (IMP)
retinal ganglion cell axon guidance  (IGI,IMP)
sensory perception of sound  (IGI)
spermatogenesis  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal circadian behavior period  (IAGP)
abnormal circardian behavior entrainment  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal eye physiology  (IAGP)
abnormal innervation  (IAGP)
abnormal lateral geniculate nucleus morphology  (IAGP)
abnormal Muller cell morphology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal olivary pretectal nucleus morphology  (IAGP)
abnormal optic disk morphology  (IAGP)
abnormal optic nerve innervation  (IAGP)
abnormal optic nerve morphology  (IAGP)
abnormal optic tract morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retinal ganglion cell morphology  (IAGP)
abnormal retinal nerve fiber layer morphology  (IAGP)
abnormal retinal rod bipolar cell morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal superior colliculus morphology  (IAGP)
abnormal suprachiasmatic nucleus morphology  (IAGP)
abnormal vestibular system physiology  (IAGP)
abnormal vision  (IAGP)
abnormal visual pursuit  (IAGP)
deafness  (IAGP)
decreased amacrine cell number  (IAGP)
decreased retinal ganglion cell number  (IAGP)
decreased total retina thickness  (IAGP)
gliosis  (IAGP)
impaired pupillary reflex  (IAGP)
increased amacrine cell number  (IAGP)
increased retinal apoptosis  (IAGP)
miotic pupils  (IAGP)
no abnormal phenotype detected  (IAGP)
optic nerve atrophy  (IAGP)
optic nerve degeneration  (IAGP)
optic nerve hypoplasia  (IAGP)
retina hypoplasia  (IAGP)
retinal ganglion cell degeneration  (IAGP)
shortened circadian behavior period  (IAGP)
thin retinal ganglion layer  (IAGP)
thin retinal inner nuclear layer  (IAGP)
thin retinal outer nuclear layer  (IAGP)
References

Additional References at PubMed
PMID:1967980   PMID:2739723   PMID:7623109   PMID:7904822   PMID:7935408   PMID:8162704   PMID:8166682   PMID:8276396   PMID:8290353   PMID:8537352   PMID:8632990   PMID:8637595  
PMID:8662774   PMID:8670054   PMID:8876243   PMID:8955272   PMID:9256502   PMID:9448000   PMID:9582431   PMID:9598366   PMID:9630743   PMID:9735355   PMID:9918694   PMID:10341242  
PMID:10349636   PMID:10357904   PMID:10414983   PMID:10924257   PMID:11042159   PMID:11069887   PMID:11076861   PMID:11156601   PMID:11163266   PMID:11217851   PMID:11493560   PMID:11493566  
PMID:11807023   PMID:11807038   PMID:11889045   PMID:12019323   PMID:12040030   PMID:12051827   PMID:12195432   PMID:12223402   PMID:12609742   PMID:12642482   PMID:12654290   PMID:12724837  
PMID:12756174   PMID:14559155   PMID:14623245   PMID:14625556   PMID:14744875   PMID:14973295   PMID:15094508   PMID:15151987   PMID:15233918   PMID:15312647   PMID:15459106   PMID:15509772  
PMID:15537545   PMID:15604100   PMID:15618518   PMID:15647317   PMID:15716344   PMID:15733064   PMID:15733660   PMID:15797020   PMID:15976303   PMID:16026391   PMID:16038893   PMID:16141072  
PMID:16141073   PMID:16182275   PMID:16202707   PMID:16236765   PMID:16343477   PMID:16354917   PMID:16651659   PMID:16672052   PMID:16690048   PMID:16702404   PMID:16959241   PMID:17075007  
PMID:17092954   PMID:17145718   PMID:17166916   PMID:17444492   PMID:17480014   PMID:17559664   PMID:17638910   PMID:17661397   PMID:17668438   PMID:17898204   PMID:17919464   PMID:18077589  
PMID:18086710   PMID:18094249   PMID:18287559   PMID:18321480   PMID:18356247   PMID:18367606   PMID:18368538   PMID:18417110   PMID:18434421   PMID:18460603   PMID:18562598   PMID:18625210  
PMID:18626943   PMID:18787067   PMID:18940586   PMID:18987029   PMID:19081073   PMID:19088125   PMID:19109949   PMID:19323995   PMID:19339595   PMID:19389377   PMID:19404406   PMID:19409494  
PMID:19416500   PMID:19459208   PMID:19553286   PMID:19596361   PMID:19692620   PMID:19828801   PMID:19877281   PMID:19924248   PMID:19945391   PMID:20053908   PMID:20059953   PMID:20130285  
PMID:20150232   PMID:20151282   PMID:20211142   PMID:20231872   PMID:20394734   PMID:20463215   PMID:20533399   PMID:20696379   PMID:20713727   PMID:20826176   PMID:20826655   PMID:20949055  
PMID:20969844   PMID:21087508   PMID:21138975   PMID:21267068   PMID:21273545   PMID:21451052   PMID:21541283   PMID:21622702   PMID:21765429   PMID:21771810   PMID:21830221   PMID:21857657  
PMID:21873635   PMID:21875655   PMID:21935940   PMID:22063212   PMID:22128334   PMID:22258620   PMID:22262898   PMID:22323600   PMID:22326227   PMID:22411557   PMID:22445509   PMID:22609278  
PMID:22836101   PMID:22907756   PMID:22973003   PMID:23028343   PMID:23170059   PMID:23172916   PMID:23197712   PMID:23223288   PMID:23293286   PMID:23426374   PMID:23481413   PMID:23649630  
PMID:23652001   PMID:23678105   PMID:23714736   PMID:23720040   PMID:23805044   PMID:23926259   PMID:24116103   PMID:24146773   PMID:24392091   PMID:24559672   PMID:24608965   PMID:24643061  
PMID:24709358   PMID:24736625   PMID:24753163   PMID:24799426   PMID:24799694   PMID:24838392   PMID:24853938   PMID:24952961   PMID:25179941   PMID:25216639   PMID:25228773   PMID:25253855  
PMID:25356872   PMID:25757744   PMID:25775587   PMID:25794677   PMID:25959730   PMID:25989023   PMID:25990804   PMID:25995483   PMID:26356988   PMID:26439398   PMID:26545349   PMID:26628093  
PMID:26670484   PMID:26861874   PMID:26949938   PMID:26962139   PMID:27151576   PMID:27210758   PMID:27385012   PMID:27390513   PMID:27391320   PMID:27402841   PMID:27532212   PMID:27697904  
PMID:28009286   PMID:28011038   PMID:28356311   PMID:28384713   PMID:28402857   PMID:28579317   PMID:28594399   PMID:28676569   PMID:29114051   PMID:29137925   PMID:29249622   PMID:29665410  
PMID:29770538   PMID:29888785   PMID:29922981   PMID:29950673   PMID:29959210   PMID:30127719   PMID:30173913   PMID:30297418   PMID:30333037   PMID:30470704   PMID:30485816   PMID:30866042  
PMID:30995485   PMID:31002540   PMID:31197108   PMID:31286854   PMID:31333190   PMID:31399471   PMID:31413277   PMID:31609468   PMID:31626642   PMID:32150249   PMID:32741043   PMID:32878923  


Genomics

Comparative Map Data
Pou4f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,159,638 - 79,163,276 (-)NCBIGRCm39mm39
GRCm38878,433,009 - 78,436,647 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,433,010 - 78,436,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv37880,956,908 - 80,960,551 (-)NCBIGRCm37mm9NCBIm37
MGSCv36881,329,081 - 81,332,724 (-)NCBImm8
Celera882,709,269 - 82,712,912 (-)NCBICelera
Cytogenetic Map8C1NCBI
POU4F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4146,638,893 - 146,642,474 (+)EnsemblGRCh38hg38GRCh38
GRCh384146,638,893 - 146,642,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374147,560,045 - 147,563,623 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364147,779,495 - 147,783,073 (+)NCBINCBI36hg18NCBI36
Build 344147,917,692 - 147,921,228NCBI
Celera4144,880,585 - 144,884,163 (+)NCBI
Cytogenetic Map4q31.22NCBI
HuRef4143,287,267 - 143,290,856 (+)NCBIHuRef
CHM1_14147,537,342 - 147,540,923 (+)NCBICHM1_1
Pou4f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01933,160,180 - 33,163,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1933,160,180 - 33,163,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01944,051,763 - 44,055,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,388,907 - 31,392,548 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11931,395,364 - 31,395,583 (+)NCBI
Celera1928,985,198 - 28,988,839 (+)NCBICelera
Cytogenetic Map19q11NCBI
Pou4f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554282,324,834 - 2,329,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554282,325,775 - 2,329,122 (+)NCBIChiLan1.0ChiLan1.0
POU4F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14150,626,392 - 150,629,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4150,626,392 - 150,629,961 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04138,969,157 - 138,972,730 (+)NCBIMhudiblu_PPA_v0panPan3
POU4F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1545,031,094 - 45,032,784 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11545,030,818 - 45,034,446 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pou4f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365352,705,184 - 2,711,785 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU4F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,044,644 - 82,046,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1882,044,443 - 82,046,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,200,440 - 87,201,609 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POU4F2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1793,150,105 - 93,160,977 (+)NCBI
ChlSab1.1 Ensembl793,150,186 - 93,151,857 (+)Ensembl
Pou4f2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248535,446,575 - 5,448,704 (+)NCBI

Position Markers
PMC125354P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,435,378 - 78,435,677UniSTSGRCm38
MGSCv37880,959,277 - 80,959,576UniSTSGRCm37
Celera882,711,638 - 82,711,937UniSTS
Pou4f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,435,527 - 78,435,617UniSTSGRCm38
MGSCv37880,958,947 - 80,959,612UniSTSGRCm37
MGSCv37880,959,176 - 80,959,294UniSTSGRCm37
Celera882,711,787 - 82,711,877UniSTS
cM MapX UniSTS
cM MapX UniSTS
cM MapX UniSTS
cM Map8 UniSTS
PMC97568P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,434,553 - 78,434,890UniSTSGRCm38
MGSCv37880,958,452 - 80,958,789UniSTSGRCm37
Celera882,710,813 - 82,711,150UniSTS
Pou4f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,435,048 - 78,435,713UniSTSGRCm38
MGSCv37880,958,947 - 80,959,612UniSTSGRCm37
Celera882,711,308 - 82,711,973UniSTS
Pou4f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,435,277 - 78,435,395UniSTSGRCm38
MGSCv37880,959,176 - 80,959,294UniSTSGRCm37
Celera882,711,537 - 82,711,655UniSTS
cM MapX UniSTS
Pou4f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM MapX UniSTS
Pou4f2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map8 UniSTS
cM MapX UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir23ammu-miR-23a-3pMirtarbaseexternal_infoNorthern blot//qRT-PCR//Western blot//GFP reporterFunctional MTI17490655
Mir23ammu-miR-23a-3pMirecordsexternal_infoNANA17490655
Mir128-2mmu-miR-128-3pMirtarbaseexternal_infoGFP reporter assay//Northern blot//Western blot//qNon-Functional MTI17490655
Mir128-1mmu-miR-128-3pMirtarbaseexternal_infoGFP reporter assay//Northern blot//Western blot//qNon-Functional MTI17490655
Mir214mmu-miR-214-3pMirtarbaseexternal_infoGFP reporter assay//Northern blot//Western blot//qFunctional MTI17490655
Mir214mmu-miR-214-5pMirecordsexternal_infoNANA17490655

Predicted Target Of
Summary Value
Count of predictions:821
Count of miRNA genes:415
Interacting mature miRNAs:574
Transcripts:ENSMUST00000034115
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034115   ⟹   ENSMUSP00000034115
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,433,010 - 78,436,645 (-)Ensembl
RefSeq Acc Id: NM_138944   ⟹   NP_620394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,159,638 - 79,163,276 (-)NCBI
GRCm38878,433,009 - 78,436,647 (-)NCBI
MGSCv37880,956,908 - 80,960,551 (-)RGD
Celera882,709,269 - 82,712,912 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_620394   ⟸   NM_138944
- UniProtKB: Q63934 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034115   ⟸   ENSMUST00000034115
Protein Domains
POU-specific

Promoters
RGD ID:8667537
Promoter ID:EPDNEW_M11797
Type:single initiation site
Name:Pou4f2_1
Description:Mus musculus POU domain, class 4, transcription factor 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38878,436,647 - 78,436,707EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102524 AgrOrtholog
Ensembl Genes ENSMUSG00000031688 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034115 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034115 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cro/C1-type_HTH UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18997 UniProtKB/Swiss-Prot
MGD MGI:102524 ENTREZGENE
NCBI Gene 18997 ENTREZGENE
Pfam Homeodomain UniProtKB/Swiss-Prot
  Pou UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pou4f2 PhenoGen
PRINTS POUDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
  POU_1 UniProtKB/Swiss-Prot
  POU_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
  SSF47413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt PO4F2_MOUSE UniProtKB/Swiss-Prot
  Q62091_MOUSE UniProtKB/TrEMBL
  Q63934 ENTREZGENE
UniProt Secondary Q63954 UniProtKB/Swiss-Prot