GABRG2 (gamma-aminobutyric acid type A receptor subunit gamma2) - Rat Genome Database

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Gene: GABRG2 (gamma-aminobutyric acid type A receptor subunit gamma2) Sus scrofa
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Symbol: GABRG2
Name: gamma-aminobutyric acid type A receptor subunit gamma2
RGD ID: 14168979
Description: ENCODES a protein that exhibits chloride channel activity (ortholog); GABA receptor activity (ortholog); GABA-A receptor activity (ortholog); INVOLVED IN adult behavior (ortholog); cellular response to zinc ion (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); alcohol withdrawal syndrome (ortholog); FOUND IN cell surface (ortholog); dendrite membrane (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid A receptor gamma 2; gamma-aminobutyric acid receptor subunit gamma-2; gamma-aminobutyric acid type A receptor gamma2 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1661,441,632 - 61,543,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11661,441,622 - 61,543,375 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21666,516,866 - 66,618,887 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GABRG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1661,441,632 - 61,543,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11661,441,622 - 61,543,375 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21666,516,866 - 66,618,887 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385162,067,465 - 162,155,539 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5162,000,057 - 162,162,977 (+)EnsemblGRCh38hg38GRCh38
GRCh375161,494,471 - 161,582,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365161,427,295 - 161,515,106 (+)NCBINCBI36Build 36hg18NCBI36
Build 345161,427,294 - 161,515,106NCBI
Celera5157,525,645 - 157,613,546 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5156,587,110 - 156,675,113 (+)NCBIHuRef
CHM1_15160,927,088 - 161,014,986 (+)NCBICHM1_1
T2T-CHM13v2.05162,596,314 - 162,684,391 (+)NCBIT2T-CHM13v2.0
Gabrg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391141,801,017 - 41,891,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1141,801,030 - 41,891,684 (-)EnsemblGRCm39 Ensembl
GRCm381141,910,190 - 42,000,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1141,910,203 - 42,000,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371141,723,697 - 41,814,180 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,753,618 - 41,844,101 (-)NCBIMGSCv36mm8
Celera1145,722,009 - 45,812,211 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.8NCBI
Gabrg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81026,876,926 - 26,965,523 (-)NCBIGRCr8
mRatBN7.21026,374,693 - 26,463,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1026,374,694 - 26,464,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1031,110,673 - 31,199,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01030,599,199 - 30,687,869 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01026,085,907 - 26,174,565 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01027,090,913 - 27,179,786 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1027,092,827 - 27,179,900 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01026,934,991 - 27,024,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41027,037,561 - 27,126,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11027,038,609 - 27,127,123 (-)NCBI
Celera1025,891,936 - 25,979,598 (-)NCBICelera
Cytogenetic Map10q21NCBI
Gabrg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540815,765,984 - 15,857,244 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540815,766,161 - 15,857,121 (+)NCBIChiLan1.0ChiLan1.0
GABRG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24157,231,806 - 157,325,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15155,371,352 - 155,472,434 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05157,436,113 - 157,529,586 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15164,135,166 - 164,222,179 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5164,068,122 - 164,222,179 (+)Ensemblpanpan1.1panPan2
GABRG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1448,794,770 - 48,901,859 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl448,796,852 - 48,901,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha448,687,383 - 48,794,507 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0449,225,668 - 49,333,872 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl449,225,441 - 49,333,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1449,035,654 - 49,142,492 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0449,167,827 - 49,274,742 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0449,689,277 - 49,797,598 (-)NCBIUU_Cfam_GSD_1.0
Gabrg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213103,160,016 - 103,220,841 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365151,607,722 - 1,671,336 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365151,609,370 - 1,670,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12364,422,519 - 64,512,124 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2364,422,391 - 64,513,652 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603413,092,532 - 13,182,379 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473327,504,660 - 27,594,039 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473327,506,827 - 27,593,750 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GABRG2
3528 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
mesenchyme
nervous system
reproductive system
2 23 3 1 23 4

Sequence


Ensembl Acc Id: ENSSSCT00000018537   ⟹   ENSSSCP00000018037
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1661,441,632 - 61,543,197 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000043878   ⟹   ENSSSCP00000042256
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1661,441,632 - 61,543,361 (-)Ensembl
RefSeq Acc Id: XM_003134087   ⟹   XP_003134135
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11661,441,622 - 61,543,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003359825   ⟹   XP_003359873
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11661,441,622 - 61,543,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076713   ⟹   XP_020932372
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11661,441,622 - 61,542,729 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003359873   ⟸   XM_003359825
- Peptide Label: isoform X2
- UniProtKB: A0A287AEH9 (UniProtKB/TrEMBL),   A0A4X1U0U9 (UniProtKB/TrEMBL),   A0A8D1DQY3 (UniProtKB/TrEMBL),   A0A8D0RKL1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003134135   ⟸   XM_003134087
- Peptide Label: isoform X1
- UniProtKB: F1RR72 (UniProtKB/TrEMBL),   A0A4X1TY82 (UniProtKB/TrEMBL),   A0A8D1DQY3 (UniProtKB/TrEMBL),   A0A8D0PPB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932372   ⟸   XM_021076713
- Peptide Label: isoform X3
- UniProtKB: A0A8D1DQY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000042256   ⟸   ENSSSCT00000043878
Ensembl Acc Id: ENSSSCP00000018037   ⟸   ENSSSCT00000018537

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017025 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015067364 UniProtKB/TrEMBL
  ENSSSCG00025032101 UniProtKB/TrEMBL
  ENSSSCG00030056826 UniProtKB/TrEMBL
  ENSSSCG00035018141 UniProtKB/TrEMBL
  ENSSSCG00040019404 UniProtKB/TrEMBL
  ENSSSCG00045016948 UniProtKB/TrEMBL
  ENSSSCG00050039579 UniProtKB/TrEMBL
  ENSSSCG00055005280 UniProtKB/TrEMBL
  ENSSSCG00060032428 UniProtKB/TrEMBL
  ENSSSCG00065017796 UniProtKB/TrEMBL
  ENSSSCG00070013765 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018537 ENTREZGENE
  ENSSSCT00000018537.5 UniProtKB/TrEMBL
  ENSSSCT00000043878 ENTREZGENE
  ENSSSCT00000043878.3 UniProtKB/TrEMBL
  ENSSSCT00015091097.1 UniProtKB/TrEMBL
  ENSSSCT00015091266.1 UniProtKB/TrEMBL
  ENSSSCT00025043742.1 UniProtKB/TrEMBL
  ENSSSCT00025043850.1 UniProtKB/TrEMBL
  ENSSSCT00030079327.1 UniProtKB/TrEMBL
  ENSSSCT00030079356.1 UniProtKB/TrEMBL
  ENSSSCT00035023406.1 UniProtKB/TrEMBL
  ENSSSCT00035023408.1 UniProtKB/TrEMBL
  ENSSSCT00040026248.1 UniProtKB/TrEMBL
  ENSSSCT00045028928.1 UniProtKB/TrEMBL
  ENSSSCT00045028985.1 UniProtKB/TrEMBL
  ENSSSCT00050053425.1 UniProtKB/TrEMBL
  ENSSSCT00050053429.1 UniProtKB/TrEMBL
  ENSSSCT00055010388.1 UniProtKB/TrEMBL
  ENSSSCT00055010412.1 UniProtKB/TrEMBL
  ENSSSCT00060043922.1 UniProtKB/TrEMBL
  ENSSSCT00060043926.1 UniProtKB/TrEMBL
  ENSSSCT00065023658.1 UniProtKB/TrEMBL
  ENSSSCT00065023660.1 UniProtKB/TrEMBL
  ENSSSCT00070026933.1 UniProtKB/TrEMBL
  ENSSSCT00070026940.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  GABBAg2_rcpt UniProtKB/TrEMBL
  GABBAg_rcpt UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
KEGG Report ssc:100516405 UniProtKB/TrEMBL
NCBI Gene GABRG2 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT GAMMA-2 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARECEPTR UniProtKB/TrEMBL
  GABAARGAMMA UniProtKB/TrEMBL
  GABAARGAMMA2 UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A287AEH9 ENTREZGENE
  A0A4X1TY82 ENTREZGENE
  A0A4X1U0U9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PPB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RKL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DQY3 ENTREZGENE, UniProtKB/TrEMBL
  F1RR72 ENTREZGENE, UniProtKB/TrEMBL
  F8SPF6_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287AEH9 UniProtKB/TrEMBL
  A0A4X1TY82 UniProtKB/TrEMBL
VGNC ID VGNC:88312 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-25 GABRG2  gamma-aminobutyric acid type A receptor subunit gamma2  GABRG2  gamma-aminobutyric acid type A receptor gamma2 subunit  Symbol and/or name change 5135510 APPROVED