GAPDH (glyceraldehyde-3-phosphate dehydrogenase) - Rat Genome Database

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Gene: GAPDH (glyceraldehyde-3-phosphate dehydrogenase) Sus scrofa
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Symbol: GAPDH
Name: glyceraldehyde-3-phosphate dehydrogenase
RGD ID: 14027225
Description: ENCODES a protein that exhibits enzyme binding (ortholog); glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (ortholog); identical protein binding (ortholog); INVOLVED IN cAMP/PKA signal transduction (ortholog); canonical glycolysis (ortholog); female pregnancy (ortholog); PARTICIPATES IN electron transport chain pathway; Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); GAIT complex (ortholog); INTERACTS WITH bis(2-chloroethyl) sulfide; calcium dichloride; deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GAPD; peptidyl-cysteine S-nitrosylase GAPDH
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,129,679 - 64,133,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,129,678 - 64,135,194 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,446,302 - 66,449,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q12-q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
GAPDHPigAlzheimer's disease  ISORGD:26619068941protein:decreased activity:cerebral cortex, hippocampusRGDPMID:17324518|REF_RGD_ID:13792614
GAPDHPigAlzheimer's disease  ISORGD:7358719068941protein:increased S-glutathionylation, decreased activity:inferior parietal cortexRGDPMID:17387692|REF_RGD_ID:13792613
GAPDHPigAlzheimer's disease  ISORGD:7358719068941 RGDPMID:28087189|REF_RGD_ID:13792604
GAPDHPigAlzheimer's disease susceptibilityISORGD:7358719068941DNA:SNP:5' utr:rs3741916 (human)RGDPMID:20864222|REF_RGD_ID:13792611
GAPDHPigAlzheimer's disease onsetISORGD:7358719068941DNA:snps:5' utr, intron: (rs3741916, rs1060621) (human)RGDPMID:15507493|REF_RGD_ID:1358618
GAPDHPigAlzheimer's disease  ISORGD:106199068941protein:decreased activity:cerebral cortex, cerebellumRGDPMID:17324518|REF_RGD_ID:13792614
GAPDHPigAlzheimer's disease  ISORGD:7358719068941DNA:SNPs, haplotypes: :rs740850, rs1060620 (human)RGDPMID:18340469|REF_RGD_ID:13792612
GAPDHPigbrain glioma  ISORGD:26619068941 RGDPMID:26032618|REF_RGD_ID:13792685
GAPDHPigCOVID-19  ISORGD:7358719068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226|REF_RGD_ID:28912744
GAPDHPigdiabetic retinopathy  ISORGD:26619068941associated with Diabetes Mellitus, ExperimentalRGDPMID:18852331|REF_RGD_ID:2315975
GAPDHPigepilepsy  ISORGD:26619068941 RGDPMID:30143487|REF_RGD_ID:13792618
GAPDHPigExperimental Diabetes Mellitus treatmentISORGD:26619068941 RGDPMID:27655796|REF_RGD_ID:13792671
GAPDHPigHuntington's disease  ISORGD:106199068941 RGDPMID:26268247|REF_RGD_ID:13792684
GAPDHPiglymphangioleiomyomatosis  ISORGD:7358719068941protein:increased expression:lung (human)RGDPMID:29885404|REF_RGD_ID:152995523
GAPDHPigmiddle cerebral artery infarction  ISORGD:26619068941 RGDPMID:25882840|REF_RGD_ID:13792686
GAPDHPigMyocardial Reperfusion Injury treatmentISORGD:26619068941 RGDPMID:27129213|REF_RGD_ID:11574725
GAPDHPigobesity treatmentISORGD:26619068941 RGDPMID:27987997|REF_RGD_ID:13792668
GAPDHPigoral squamous cell carcinoma  ISORGD:26619068941 RGDPMID:27375172|REF_RGD_ID:13792673
GAPDHPigPregnancy in Diabetics  ISORGD:26619068941associated with Diabetes Mellitus, Experimental;mRNA, protein:decreased expression,decreased activity:embryoRGDPMID:12716756|REF_RGD_ID:2315979
GAPDHPigrheumatic heart disease  ISORGD:26619068941 RGDPMID:26823728|REF_RGD_ID:13792679
1 to 20 of 24 rows
Object Symbol
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Original Reference(s)
GAPDHPigHyperphosphatemic Familial Tumoral Calcinosis 1  ISORGD:7358718554872ClinVar Annotator: match by term: Tumoral calcinosis, hyperphosphatemic, familial, 1ClinVarPMID:25378588|PMID:29389098
GAPDHPiglymphoproliferative syndrome 2  ISORGD:7358718554872ClinVar Annotator: match by term: Lymphoproliferative syndrome 2ClinVarPMID:28492532
GAPDHPigperoxisome biogenesis disorder 2B  ISORGD:7358718554872ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2BClinVarPMID:28492532
GAPDHPigprimary autosomal recessive microcephaly 21  ISORGD:7358718554872ClinVar Annotator: match by term: Microcephaly 21, primary, autosomal recessiveClinVarPMID:25741868
GAPDHPigTemtamy syndrome  ISORGD:7358718554872ClinVar Annotator: match by term: Temtamy syndromeClinVarPMID:28492532
1 to 13 of 13 rows
Object Symbol
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Evidence
With
Reference
Notes
Source
Original Reference(s)
GAPDHPigAcute Coronary Syndrome  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:21751358
GAPDHPigAnimal Disease Models  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:27602772
GAPDHPigColorectal Neoplasms  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:25944804
GAPDHPigEsophageal Neoplasms  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:15986332
GAPDHPighepatocellular carcinoma  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:16767786|PMID:21472284
GAPDHPigHypoxia  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:19579223
GAPDHPiglung adenocarcinoma  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:27602772
GAPDHPigMouth Neoplasms  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:15274141
GAPDHPigNecrosis  ISORGD:7358719068941CTD Direct Evidence: therapeuticCTDPMID:25725130
GAPDHPigosteoarthritis  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:18784066
GAPDHPigosteoporosis  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:18924182
GAPDHPigParkinsonism  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:29886133
GAPDHPigsquamous cell carcinoma  ISORGD:7358719068941CTD Direct Evidence: marker/mechanismCTDPMID:15274141
1 to 13 of 13 rows

1 to 9 of 9 rows

  
Object Symbol
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Original Reference(s)
GAPDHPigbis(2-chloroethyl) sulfide increases expressionEXP 6480464Mustard Gas results in increased expression of GAPDH mRNACTDPMID:18988085
GAPDHPigcalcium dichloride multiple interactionsEXP 6480464[Sodium Bicarbonate co-treated with Calcium Chloride] results in increased activity of GAPDH proteinCTDPMID:26582256
GAPDHPigdeoxynivalenol increases expressionEXP 6480464deoxynivalenol results in increased expression of GAPDH mRNACTDPMID:35307453
GAPDHPigelemental selenium multiple interactionsEXP 6480464Selenium inhibits the reaction [Paraquat results in decreased activity of GAPDH protein]CTDPMID:17055214
GAPDHPigparaquat multiple interactionsEXP 6480464Selenium inhibits the reaction [Paraquat results in decreased activity of GAPDH protein]CTDPMID:17055214
GAPDHPigparaquat decreases activityEXP 6480464Paraquat results in decreased activity of GAPDH proteinCTDPMID:11814328|PMID:17055214
GAPDHPigpotassium chromate decreases activityEXP 6480464potassium chromate(VI) results in decreased activity of GAPDH proteinCTDPMID:26582256
GAPDHPigselenium atom multiple interactionsEXP 6480464Selenium inhibits the reaction [Paraquat results in decreased activity of GAPDH protein]CTDPMID:17055214
GAPDHPigsodium hydrogencarbonate multiple interactionsEXP 6480464[Sodium Bicarbonate co-treated with Calcium Chloride] results in increased activity of GAPDH proteinCTDPMID:26582256

1 to 9 of 9 rows

Biological Process
1 to 20 of 33 rows

  
Object Symbol
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Original Reference(s)
GAPDHPigantimicrobial humoral immune response mediated by antimicrobial peptide involved_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigapoptotic process involved_inIEAUniProtKB-KW:KW-0053150520179 UniProtGO_REF:0000043
GAPDHPigcAMP/PKA signal transduction  ISORGD:26619068941 RGDPMID:28258188|REF_RGD_ID:13792662
GAPDHPigcanonical glycolysis involved_inISORGD:106199068941 PMID:10777777, PMID:28918937MGIPMID:10777777|PMID:28918937
GAPDHPigcanonical glycolysis involved_inISORGD:106199068941 PMID:12581789MGIPMID:12581789
GAPDHPigcellular response to type II interferon involved_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigdefense response to fungus involved_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigfemale pregnancy  ISORGD:26619068941 RGDPMID:27312951|REF_RGD_ID:13792674
GAPDHPiggluconeogenesis  ISORGD:26619068941 RGDPMID:15720133|PMID:28258188|REF_RGD_ID:13792662|REF_RGD_ID:2302795
GAPDHPiggluconeogenesis involved_inISORGD:106199068941 PMID:28258188MGIPMID:28258188
GAPDHPigglucose metabolic process involved_inIEAInterPro:IPR006424150520179 InterProGO_REF:0000002
GAPDHPigglycolytic process  ISORGD:26619068941 RGDPMID:28258188|REF_RGD_ID:13792662
GAPDHPigglycolytic process involved_inIEAUniPathway:UPA00109150520179 UniProtGO_REF:0000041
GAPDHPigglycolytic process involved_inIEAUniProtKB-KW:KW-0324150520179 UniProtGO_REF:0000043
GAPDHPigimmune system process involved_inIEAUniProtKB-KW:KW-0391150520179 UniProtGO_REF:0000043
GAPDHPiginnate immune response involved_inIEAUniProtKB-KW:KW-0399150520179 UniProtGO_REF:0000043
GAPDHPigkilling by host of symbiont cells involved_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigkilling of cells of another organism involved_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigmicrotubule cytoskeleton organization involved_inISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPignegative regulation of endopeptidase activity involved_inISORGD:7358719068941 PMID:22832495UniProtPMID:22832495
1 to 20 of 33 rows

Cellular Component
1 to 20 of 23 rows

  
Object Symbol
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Original Reference(s)
GAPDHPigcytoplasm located_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigcytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
GAPDHPigcytoplasm located_inISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPigcytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
GAPDHPigcytoskeleton located_inIEAUniProtKB-SubCell:SL-0090150520179 UniProtGO_REF:0000044
GAPDHPigcytosol located_inIEAUniProtKB:P04406|UniProtKB:V9HVZ4|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigcytosol is_active_inISORGD:106199068941 PMID:21347706, PMID:23512986, PMID:24137001MGIPMID:21347706|PMID:23512986|PMID:24137001
GAPDHPigcytosol part_ofISORGD:7358719068941 PMID:28404743CACAOPMID:28404743
GAPDHPigcytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
GAPDHPigcytosol located_inISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPigGAIT complex part_ofIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigGAIT complex part_ofISSUniProtKB:P04406150520179 UniProtGO_REF:0000024
GAPDHPigglutamatergic synapse is_active_inISORGD:26619068941PMID:9371836SynGOPMID:9371836|REF_RGD_ID:13702148
GAPDHPiglipid droplet located_inIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigmicrotubule cytoskeleton located_inISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPignuclear membrane located_inIEAUniProtKB:P04406|UniProtKB:V9HVZ4|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPignucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
GAPDHPignucleus part_ofIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPignucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
GAPDHPignucleus located_inISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
1 to 20 of 23 rows

Molecular Function
1 to 20 of 52 rows

  
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
GAPDHPigaspartic-type endopeptidase inhibitor activity enablesIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigdisordered domain specific binding enablesIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigenzyme binding enablesISOUniProtKB:Q8VCN59068941 PMID:19903941UniProtPMID:19903941
GAPDHPigglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity  ISORGD:26619068941 RGDPMID:15720133|REF_RGD_ID:2302795
GAPDHPigglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity enablesIEAEC:1.2.1.12150520179 UniProtGO_REF:0000003
GAPDHPigglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity enablesIEARHEA:10300150520179 RHEAGO_REF:0000116
GAPDHPigglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity enablesISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPigglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity enablesIEAUniRule:UR000068985150520179 UniProtGO_REF:0000104
GAPDHPigidentical protein binding enablesIEAUniProtKB:P04406|ensembl:ENSP00000229239150520179 EnsemblGO_REF:0000107
GAPDHPigidentical protein binding  ISORGD:26619068941homodimerization and homotetramerizationRGDPMID:27129213|REF_RGD_ID:11574725
GAPDHPigmicrotubule binding enablesISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPigNAD binding enablesIEAInterPro:IPR006424|InterPro:IPR020828150520179 InterProGO_REF:0000002
GAPDHPigNAD binding enablesIEAUniRule:UR000068985150520179 UniProtGO_REF:0000104
GAPDHPigNADP binding enablesIEAInterPro:IPR006424150520179 InterProGO_REF:0000002
GAPDHPignucleotide binding enablesIEAUniProtKB-KW:KW-0547150520179 UniProtGO_REF:0000043
GAPDHPigoxidoreductase activity enablesIEAUniProtKB-KW:KW-0560150520179 UniProtGO_REF:0000043
GAPDHPigoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor enablesIEAInterPro:IPR006424|InterPro:IPR020829|InterPro:IPR020830|InterPro:IPR020831150520179 InterProGO_REF:0000002
GAPDHPigpeptidyl-cysteine S-nitrosylase activity enablesIEARHEA:66684150520179 RHEAGO_REF:0000116
GAPDHPigpeptidyl-cysteine S-nitrosylase activity enablesISSUniProtKB:P04797150520179 UniProtGO_REF:0000024
GAPDHPigprotein binding enablesISOUniProtKB:Q084609068941 PMID:19423573IntActPMID:19423573
1 to 20 of 52 rows

RGD Manual Annotations


  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
GAPDHPiggluconeogenesis pathway   ISORGD:26619068941 RGDPMID:15720133|REF_RGD_ID:2302795

Imported Annotations - SMPDB

1 to 11 of 11 rows
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Reference
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Original Reference(s)
GAPDHPigelectron transport chain pathway  ISORGD:7358719068941 SMPDBSMP:00355
GAPDHPigFanconi syndrome pathway  ISORGD:7358719068941 SMPDBSMP:00572
GAPDHPigfructose-1,6-bisphosphatase deficiency pathway  ISORGD:7358719068941 SMPDBSMP:00562
GAPDHPiggluconeogenesis pathway   ISORGD:7358719068941 SMPDBSMP:00128
GAPDHPigglycogen storage disease type Ia pathway  ISORGD:7358719068941 SMPDBSMP:00374|SMP:00581
GAPDHPigglycogen storage disease type Ib pathway  ISORGD:7358719068941 SMPDBSMP:00573
GAPDHPigglycogen storage disease type VII pathway  ISORGD:7358719068941 SMPDBSMP:00531
GAPDHPigglycolysis pathway   ISORGD:7358719068941 SMPDBSMP:00040
GAPDHPignicotinamide adenine dinucleotide metabolic pathway   ISORGD:7358719068941 SMPDBSMP:00124
GAPDHPigphosphoenolpyruvate carboxykinase deficiency pathway  ISORGD:7358719068941 SMPDBSMP:00560
GAPDHPigtriosephosphate isomerase deficiency pathway  ISORGD:7358719068941 SMPDBSMP:00563
1 to 11 of 11 rows
PMID:1201027   PMID:4299800   PMID:8833235   PMID:9241041   PMID:9676236   PMID:10429942   PMID:12606467   PMID:14681463   PMID:16751257   PMID:17026777   PMID:17145712   PMID:17697375  
PMID:18671919   PMID:22301074   PMID:30032202   PMID:37786952  



GAPDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,129,679 - 64,133,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,129,678 - 64,135,194 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,446,302 - 66,449,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q12-q21NCBI
GAPDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,534,517 - 6,538,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,534,512 - 6,538,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,643,683 - 6,647,537 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,513,918 - 6,517,797 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,513,944 - 6,517,797NCBI
Celera128,260,518 - 8,264,397 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,497,829 - 6,501,781 (+)NCBIHuRef
CHM1_1126,642,592 - 6,646,544 (+)NCBICHM1_1
T2T-CHM13v2.0126,544,873 - 6,548,727 (+)NCBIT2T-CHM13v2.0
Gapdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,138,812 - 125,143,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,138,678 - 125,143,430 (-)EnsemblGRCm39 Ensembl
GRCm386125,161,852 - 125,166,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,161,715 - 125,166,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,111,870 - 125,115,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,128,554 - 125,131,222 (-)NCBIMGSCv36mm8
Celera6126,831,711 - 126,835,442 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.32NCBI
Gapdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,648,592 - 159,653,436 (-)NCBIGRCr8
mRatBN7.24157,962,312 - 157,967,158 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4157,962,343 - 157,966,235 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04157,676,336 - 157,680,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04224,693,580 - 224,697,455 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,282,215 - 161,286,090 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4146,699,388 - 146,703,263 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gapdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,162,467 - 4,166,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,162,467 - 4,166,783 (+)NCBIChiLan1.0ChiLan1.0
GAPDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,096,075 - 12,100,140 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,092,832 - 12,096,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,665,218 - 6,669,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,583,895 - 6,587,729 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,583,895 - 6,587,729 (+)Ensemblpanpan1.1panPan2
LOC100688969
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X51,925,654 - 51,926,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX42,758,798 - 42,759,848 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X52,892,500 - 52,893,549 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X50,867,280 - 50,868,330 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X52,198,694 - 52,199,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X52,119,573 - 52,120,589 (+)NCBIUU_Cfam_GSD_1.0
Gapdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,575,598 - 102,580,238 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,243,147 - 1,247,903 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,243,149 - 1,247,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAPDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,569,029 - 6,572,877 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,653,527 - 1,657,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gapdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,257,853 - 3,261,735 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,257,805 - 3,261,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in GAPDH
96 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3


1 to 29 of 29 rows
RefSeq Transcripts NM_001206359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021091114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002343817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF017079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF043486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF069649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF141959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF202970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF439784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF531098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK234838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK348341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK391706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU914489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ178124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ403065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ845173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01045681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ013301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ786424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U48832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X94251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENSSSCT00000000756   ⟹   ENSSSCP00000000740
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,129,679 - 64,133,991 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000043083   ⟹   ENSSSCP00000055480
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,129,680 - 64,132,482 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000043459   ⟹   ENSSSCP00000033827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,129,883 - 64,132,528 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000051325   ⟹   ENSSSCP00000035519
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,129,883 - 64,132,148 (-)Ensembl
RefSeq Acc Id: NM_001206359   ⟹   NP_001193288
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1564,129,680 - 64,134,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091114   ⟹   XP_020946773
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1564,129,678 - 64,133,986 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343817
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1564,129,679 - 64,135,194 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020946773   ⟸   XM_021091114
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UVA4 (UniProtKB/TrEMBL),   A0A481CPX2 (UniProtKB/TrEMBL),   A0A8D0KB32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193288   ⟸   NM_001206359
- UniProtKB: P79317 (UniProtKB/Swiss-Prot),   P79299 (UniProtKB/Swiss-Prot),   O18816 (UniProtKB/Swiss-Prot),   Q29546 (UniProtKB/Swiss-Prot),   P00355 (UniProtKB/Swiss-Prot),   A0A481CCJ1 (UniProtKB/TrEMBL),   A0A076KRX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000000740   ⟸   ENSSSCT00000000756
Ensembl Acc Id: ENSSSCP00000035519   ⟸   ENSSSCT00000051325
Ensembl Acc Id: ENSSSCP00000055480   ⟸   ENSSSCT00000043083


1 to 40 of 88 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000000694 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015069184 UniProtKB/Swiss-Prot
  ENSSSCG00035081064 UniProtKB/Swiss-Prot
  ENSSSCG00040064450 UniProtKB/Swiss-Prot
  ENSSSCG00045017499 UniProtKB/Swiss-Prot
  ENSSSCG00055030580 UniProtKB/Swiss-Prot
  ENSSSCG00060043031 UniProtKB/Swiss-Prot
  ENSSSCG00065077443 UniProtKB/Swiss-Prot
  ENSSSCG00070019692 UniProtKB/Swiss-Prot
  ENSSSCG00085012926 UniProtKB/Swiss-Prot
  ENSSSCG00090024749 UniProtKB/Swiss-Prot
  ENSSSCG00110020438 UniProtKB/Swiss-Prot
  ENSSSCG00115017826 UniProtKB/Swiss-Prot
  ENSSSCG00130021986 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000000756 ENTREZGENE
  ENSSSCT00000000756.4 UniProtKB/Swiss-Prot
  ENSSSCT00015092759.1 UniProtKB/Swiss-Prot
  ENSSSCT00035111381.1 UniProtKB/Swiss-Prot
  ENSSSCT00035111396.1 UniProtKB/Swiss-Prot
  ENSSSCT00040088131.1 UniProtKB/Swiss-Prot
  ENSSSCT00045030090.1 UniProtKB/Swiss-Prot
  ENSSSCT00055060969.1 UniProtKB/Swiss-Prot
  ENSSSCT00060058387.1 UniProtKB/Swiss-Prot
  ENSSSCT00065107183.1 UniProtKB/Swiss-Prot
  ENSSSCT00070038969.1 UniProtKB/Swiss-Prot
  ENSSSCT00070038975.1 UniProtKB/Swiss-Prot
  ENSSSCT00085024290 UniProtKB/Swiss-Prot
  ENSSSCT00090043939 UniProtKB/Swiss-Prot
  ENSSSCT00110039530 UniProtKB/Swiss-Prot
  ENSSSCT00115031571 UniProtKB/Swiss-Prot
  ENSSSCT00130042632 UniProtKB/Swiss-Prot
Gene3D-CATH Dihydrodipicolinate Reductase, domain 2 UniProtKB/Swiss-Prot
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro GlycerAld/Erythrose_P_DH UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_AS UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_cat UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/Swiss-Prot
  Glyceraldehyde-3-P_DH_1 UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
KEGG Report ssc:396823 UniProtKB/Swiss-Prot
1 to 40 of 88 rows