Gapdh (glyceraldehyde-3-phosphate dehydrogenase) - Rat Genome Database

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Gene: Gapdh (glyceraldehyde-3-phosphate dehydrogenase) Mus musculus
Analyze
Symbol: Gapdh
Name: glyceraldehyde-3-phosphate dehydrogenase
RGD ID: 10619
MGI Page MGI
Description: Enables enzyme binding activity and glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Involved in negative regulation of translation. Located in cytosol and plasma membrane. Part of GAIT complex. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: Ga; Gapd; MGC102544; MGC102546; MGC103190; MGC103191; MGC105239; peptidyl-cysteine S-nitrosylase GAPDH
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: 3000002C10Rik   4930448K20Rik   Gapdh-ps1   Gapdh-ps10   Gapdh-ps11   Gapdh-ps12   Gapdh-ps13   Gapdh-ps14   Gapdh-ps15   Gapdh-ps16   Gapdh-ps2   Gapdh-ps3   Gapdh-ps4   Gapdh-ps5   Gapdh-ps6   Gapdh-ps7   Gapdh-ps8   Gapdh-ps9   Gm10284   Gm10290   Gm10291   Gm10293   Gm10313   Gm10327   Gm10358   Gm10359   Gm10364   Gm10481   Gm10566   Gm11185   Gm11198   Gm11214   Gm11453   Gm11550   Gm11557   Gm11658   Gm11796   Gm11907   Gm11929   Gm11953   Gm11960   Gm11996   Gm12017   Gm12033   Gm12070   Gm12117   Gm12182   Gm12266   Gm12286   Gm12297   Gm12332   Gm12416   Gm12419   Gm12464   Gm12537   Gm12634   Gm12641   Gm12671   Gm12684   Gm12717   Gm12864   Gm12969   Gm13172   Gm13292   Gm13296   Gm13326   Gm13394   Gm13464   Gm13466   Gm13489   Gm13501   Gm13527   Gm13592   Gm13668   Gm13677   Gm13761   Gm13870   Gm13882   Gm14006   Gm14111   Gm14113   Gm14130   Gm14148   Gm14491   Gm14760   Gm14921   Gm15191   Gm15294   Gm15593   Gm16374   Gm16470   Gm17068   Gm17794   Gm17797   Gm17798   Gm17799   Gm17800   Gm18822   Gm18828   Gm18848   Gm18859   Gm2076   Gm21045   Gm2221   Gm2308   Gm2383   Gm2445   Gm2451   Gm2467   Gm2546   Gm2574   Gm2606   Gm2875   Gm3200   Gm3222   Gm3534   Gm3671   Gm3695   Gm3809   Gm3839   Gm3890   Gm4217   Gm4291   Gm4335   Gm4373   Gm4398   Gm4405   Gm4518   Gm4529   Gm4575   Gm4609   Gm4654   Gm4691   Gm4795   Gm4804   Gm4819   Gm4823   Gm4842   Gm4891   Gm4908   Gm4929   Gm4960   Gm5069   Gm5138   Gm5139   Gm5173   Gm5177   Gm5183   Gm5205   Gm5210   Gm5230   Gm5262   Gm5270   Gm5272   Gm5274   Gm5300   Gm5313   Gm5327   Gm5335   Gm5342   Gm5345   Gm5350   Gm5354   Gm5430   Gm5507   Gm5523   Gm5559   Gm5650   Gm5652   Gm5674   Gm5706   Gm5710   Gm5732   Gm5760   Gm5787   Gm5839   Gm5863   Gm5944   Gm5974   Gm5976   Gm6114   Gm6216   Gm6316   Gm6317   Gm6322   Gm6441   Gm6463   Gm6498   Gm6631   Gm6669   Gm6771   Gm6773   Gm6796   Gm6931   Gm6944   Gm6946   Gm6967   Gm6981   Gm6989   Gm7069   Gm7118   Gm7129   Gm7132   Gm7150   Gm7183   Gm7189   Gm7191   Gm7251   Gm7286   Gm7293   Gm7336   Gm7456   Gm7481   Gm7497   Gm7507   Gm7508   Gm7545   Gm7572   Gm7577   Gm7656   Gm7693   Gm7713   Gm7719   Gm7734   Gm7741   Gm7745   Gm7763   Gm7765   Gm7784   Gm7788   Gm7833   Gm7874   Gm7952   Gm7985   Gm8048   Gm8055   Gm8058   Gm8079   Gm8100   Gm8153   Gm8167   Gm8170   Gm8174   Gm8183   Gm8192   Gm8245   Gm8254   Gm8318   Gm8321   Gm8330   Gm8343   Gm8349   Gm8357   Gm8365   Gm8492   Gm8513   Gm8529   Gm8565   Gm8601   Gm8604   Gm8609   Gm8614   Gm8661   Gm8707   Gm8709   Gm8756   Gm8824   Gm8825   Gm8864   Gm8907   Gm8919   Gm8927   Gm8941   Gm8955   Gm8957   Gm8984   Gm8993   Gm9022   Gm9034   Gm9061   Gm9081   Gm9114   Gm9120   Gm9127   Gm9135   Gm9142   Gm9146   Gm9149   Gm9162   Gm9164   Gm9167   Gm9192   Gm9204   Gm9211   Gm9225   Gm9274   Gm9321   Gm9341   Gm9358   Gm9381   Gm9423   Gm9439   Gm9487   Gm9499   Gm9522   Gm9556   Gm9568   Gm9578   Gm9619   Gm9621   Gm9658  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
NCBI Annotation Information: Note: GeneID 14433 was annotated on chromosome 6 on NCBI's Build 36.1 and GeneID 407972 (then associated with the functional Gapdh) was not annotated. Sequences associated with GeneID 14433 also align to chromosome 2 A3, the location of a highly related Gapdh pseudogene that was not annotated on Build 36.1. To connect the nomenclature with the annotation, GeneID 14433 was merged with GeneID 407972 and it now represents the functional Gapdh gene on chromosome 6. The RefSeq for Gapdh is NM_008084 with NM_001001303.1 being secondary to it. The Gapdh pseudogene on chromosome 2 is now represented by GeneID 100033452 and the RefSeq NG_005903.1. [13 Feb 2013]
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,138,815 - 125,143,430 (-)NCBIGRCm39mm39
GRCm39 Ensembl6125,138,678 - 125,143,430 (-)Ensembl
GRCm386125,161,852 - 125,166,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,161,715 - 125,166,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,111,870 - 125,115,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv366125,128,554 - 125,131,222 (-)NCBImm8
Celera6126,831,711 - 126,835,442 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-selegiline  (EXP,ISO)
(S)-nicotine  (EXP)
1,10-phenanthroline  (ISO)
1,2-dimethylhydrazine  (EXP)
1,2-naphthoquinone  (ISO)
1,3-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-bromohexadecanoic acid  (ISO)
2-methoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,7-dihydropurine-6-thione  (ISO)
3-bromopyruvic acid  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-nitropropanoic acid  (ISO)
3-phosphoglyceric acid  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxynon-2-enal  (EXP)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP,ISO)
5-fluorouracil  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
7-NITROINDAZOLE  (ISO)
9-cis-retinoic acid  (ISO)
acetaldehyde  (ISO)
acetamide  (ISO)
acetic acid  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
ADP  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-amanitin  (EXP)
alpha-hexachlorocyclohexane  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
ATP  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-fructofuranose 1,6-bisphosphate  (ISO)
beta-naphthoflavone  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
boric acid  (EXP)
bromochloroacetic acid  (EXP)
buten-2-one  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
capsaicin  (ISO)
captan  (EXP)
carbon nanotube  (EXP,ISO)
cerium trichloride  (ISO)
chloroacetaldehyde  (ISO)
chloroacetic acid  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
cobalt(2+) sulfate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
crocidolite asbestos  (ISO)
cumene hydroperoxide  (ISO)
cyclosporin A  (EXP)
cytarabine  (ISO)
D-fructofuranose 1,6-bisphosphate  (ISO)
D-glucose  (EXP,ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
diethyl maleate  (EXP)
dihydroartemisinin  (ISO)
Diisodecyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
Diosbulbin B  (EXP)
dioxygen  (EXP,ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dizocilpine maleate  (ISO)
dopamine  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
etoposide  (EXP)
fenbuconazole  (ISO)
fentin chloride  (ISO)
ferric ammonium citrate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
furan  (ISO)
genistein  (ISO)
glafenine  (ISO)
glucose  (EXP,ISO)
glutathione  (ISO)
glyceraldehyde 3-phosphate  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
graphite  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroxyurea  (EXP)
indometacin  (ISO)
isoflavones  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
keto-D-fructose 1,6-bisphosphate  (ISO)
L-ascorbic acid  (EXP)
L-ethionine  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
mercaptopurine  (ISO)
methanol  (ISO)
methoxychlor  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
morphine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (EXP)
nicotine  (EXP)
nilutamide  (ISO)
nitric oxide  (EXP,ISO)
obeticholic acid  (ISO)
okadaic acid  (ISO)
omeprazole  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (ISO)
polymyxin B2  (EXP)
potassium dichromate  (ISO)
progesterone  (ISO)
promethazine  (ISO)
prostaglandin A1  (EXP)
purine-6-thiol  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
Rebamipide  (ISO)
resveratrol  (ISO)
retinyl acetate  (EXP)
rimonabant  (EXP)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP,ISO)
Salinomycin  (ISO)
selenium atom  (ISO)
serotonin  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP)
sucrose  (EXP)
sunitinib  (ISO)
superoxide  (ISO)
T-2 toxin  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetraethylenepentamine  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenylstannane  (ISO)
trovafloxacin  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. Allen M, etal., Neurobiol Aging. 2012 Jan;33(1):203.e25-33. doi: 10.1016/j.neurobiolaging.2010.08.002. Epub 2010 Sep 23.
2. Bond ST, etal., FASEB J. 2017 Jun;31(6):2592-2602. doi: 10.1096/fj.201601215R. Epub 2017 Mar 3.
3. El Kadmiri N, etal., J Clin Neurosci. 2017 Jun;40:24-26. doi: 10.1016/j.jocn.2016.12.007. Epub 2017 Jan 10.
4. Grillon E, etal., BMC Res Notes. 2015 Jun 2;8:207. doi: 10.1186/s13104-015-1191-z.
5. Huo J, etal., J Thorac Cardiovasc Surg. 2018 Jul 30. pii: S0022-5223(18)32035-X. doi: 10.1016/j.jtcvs.2018.07.045.
6. Huo J, etal., Neuroscience. 2016 Aug 25;330:171-80. doi: 10.1016/j.neuroscience.2016.05.054. Epub 2016 May 30.
7. Hwang S, etal., EMBO Mol Med. 2015 Oct;7(10):1307-26. doi: 10.15252/emmm.201505256.
8. Kanwar M and Kowluru RA, Diabetes. 2009 Jan;58(1):227-34. Epub 2008 Oct 13.
9. Lee JH, etal., Neurogenetics. 2008 May;9(2):127-38. doi: 10.1007/s10048-008-0122-8. Epub 2008 Mar 14.
10. Li W, etal., Int J Clin Exp Pathol. 2015 Nov 1;8(11):14151-60. eCollection 2015.
11. Li Y, etal., Proc Natl Acad Sci U S A 2004 Nov 2;101(44):15688-93. Epub 2004 Oct 26.
12. MGD and Homologene mouse data transfer
13. MGD data from the GO Consortium
14. Mi Q, etal., Ann Clin Lab Sci. 2018 Jul;48(4):460-468.
15. Nakajima H, etal., J Biol Chem. 2015 Jun 5;290(23):14493-503. doi: 10.1074/jbc.M114.635607. Epub 2015 Apr 16.
16. Newman SF, etal., J Neurosci Res. 2007 May 15;85(7):1506-14. doi: 10.1002/jnr.21275.
17. Peng X and McCormick DL, Oncol Rep. 2016 Aug;36(2):1076-84. doi: 10.3892/or.2016.4883. Epub 2016 Jun 16.
18. Pipeline to import KEGG annotations from KEGG into RGD
19. Pipeline to import SMPDB annotations from SMPDB into RGD
20. Qvit N, etal., J Biol Chem. 2016 Jun 24;291(26):13608-21. doi: 10.1074/jbc.M115.711630. Epub 2016 Apr 27.
21. Ratnakumari L and Murthy CR, Neurosci Lett. 1993 Oct 14;161(1):37-40.
22. RGD automated import pipeline
23. RGD automated import pipeline for gene-chemical interactions
24. Sakai A, etal., Chem Res Toxicol. 2005 Feb;18(2):277-82.
25. Shalova IN, etal., Biochim Biophys Acta. 2007 May;1770(5):826-32. doi: 10.1016/j.bbagen.2007.01.014. Epub 2007 Feb 4.
26. Si X, etal., Carbohydr Polym. 2017 Feb 10;157:834-841. doi: 10.1016/j.carbpol.2016.10.042. Epub 2016 Oct 17.
27. Teixeira SD, etal., Physiol Rep. 2016 Sep;4(18). pii: 4/18/e12961. doi: 10.14814/phy2.12961.
28. Wentzel P, etal., Diabetes. 2003 May;52(5):1222-8.
Additional References at PubMed
PMID:176725   PMID:1375514   PMID:1480182   PMID:1591341   PMID:1686731   PMID:2040452   PMID:2055457   PMID:2145197   PMID:3221863   PMID:3796661   PMID:3960038   PMID:6096136  
PMID:7477327   PMID:7543319   PMID:7567444   PMID:7573490   PMID:7588258   PMID:7590291   PMID:7615639   PMID:7626792   PMID:7628699   PMID:7633444   PMID:7649395   PMID:7656403  
PMID:7670468   PMID:7704017   PMID:7790379   PMID:7819129   PMID:7891898   PMID:7893603   PMID:7909459   PMID:7918100   PMID:7958843   PMID:7983011   PMID:8081710   PMID:8111117  
PMID:8111372   PMID:8174772   PMID:8176756   PMID:8182339   PMID:8219353   PMID:8226859   PMID:8270621   PMID:8528205   PMID:8563027   PMID:8589431   PMID:8742817   PMID:8750872  
PMID:8829631   PMID:8833235   PMID:8889548   PMID:9006960   PMID:9055810   PMID:9074935   PMID:9169087   PMID:9811942   PMID:10349636   PMID:10882104   PMID:10886019   PMID:10922068  
PMID:11042159   PMID:11076861   PMID:11180952   PMID:11217851   PMID:11279525   PMID:11846445   PMID:11970905   PMID:12070318   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12691731  
PMID:12904583   PMID:14651853   PMID:14681479   PMID:15489334   PMID:15665293   PMID:15782199   PMID:15806558   PMID:15895466   PMID:15951807   PMID:16141072   PMID:16141073   PMID:16186172  
PMID:16287714   PMID:16324157   PMID:16505364   PMID:16602821   PMID:16751257   PMID:16919269   PMID:16944949   PMID:16984773   PMID:16987237   PMID:17121833   PMID:17500595   PMID:17521179  
PMID:17626619   PMID:17634366   PMID:17874335   PMID:17962088   PMID:18223649   PMID:18228199   PMID:18448678   PMID:18477666   PMID:18497856   PMID:18549242   PMID:18552833   PMID:18607772  
PMID:18698006   PMID:18706911   PMID:18799693   PMID:18809573   PMID:19075228   PMID:19136429   PMID:19140804   PMID:19154771   PMID:19285135   PMID:19423573   PMID:19451232   PMID:19470756  
PMID:19607794   PMID:19837666   PMID:19850099   PMID:19903941   PMID:19998061   PMID:20114047   PMID:20802533   PMID:20805681   PMID:20972425   PMID:21267068   PMID:21383078   PMID:21413931  
PMID:21539824   PMID:21565186   PMID:21589869   PMID:21731673   PMID:21873635   PMID:22006949   PMID:22027257   PMID:22056141   PMID:22123949   PMID:22260730   PMID:22457359   PMID:22496890  
PMID:22673621   PMID:22735032   PMID:22884776   PMID:22896902   PMID:22918941   PMID:22921202   PMID:22955271   PMID:23000033   PMID:23027902   PMID:23071094   PMID:23115268   PMID:23213437  
PMID:23527007   PMID:23530063   PMID:23653351   PMID:23696560   PMID:23801767   PMID:24101517   PMID:24102516   PMID:24137001   PMID:24142690   PMID:24367685   PMID:24457600   PMID:24739386  
PMID:24960163   PMID:25053429   PMID:25772331   PMID:25870284   PMID:26053401   PMID:26267271   PMID:26633036   PMID:26672975   PMID:27064279   PMID:27461448   PMID:27746211   PMID:27802315  
PMID:27816501   PMID:28245920   PMID:28298336   PMID:28378742   PMID:28404743   PMID:28634551   PMID:28701737   PMID:28753256   PMID:28864008   PMID:28893950   PMID:29117290   PMID:29273633  
PMID:29459677   PMID:29581187   PMID:30094508   PMID:30550785   PMID:30562941   PMID:30595499   PMID:31167115   PMID:31988240   PMID:32015347   PMID:32325033   PMID:32735781   PMID:33459133  
PMID:34332079   PMID:34474245  


Genomics

Comparative Map Data
Gapdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,138,815 - 125,143,430 (-)NCBIGRCm39mm39
GRCm39 Ensembl6125,138,678 - 125,143,430 (-)Ensembl
GRCm386125,161,852 - 125,166,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,161,715 - 125,166,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,111,870 - 125,115,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv366125,128,554 - 125,131,222 (-)NCBImm8
Celera6126,831,711 - 126,835,442 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.32NCBI
GAPDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl126,534,512 - 6,538,374 (+)EnsemblGRCh38hg38GRCh38
GRCh38126,534,517 - 6,538,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37126,643,683 - 6,647,537 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,513,918 - 6,517,797 (+)NCBINCBI36hg18NCBI36
Build 34126,513,944 - 6,517,797NCBI
Celera128,260,518 - 8,264,397 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef126,497,829 - 6,501,781 (+)NCBIHuRef
CHM1_1126,642,592 - 6,646,544 (+)NCBICHM1_1
Gapdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24157,962,312 - 157,967,158 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4157,962,343 - 157,966,235 (-)Ensembl
Rnor_6.04157,676,336 - 157,680,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,676,595 - 157,679,962 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,693,580 - 224,697,455 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,282,215 - 161,286,090 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1962,857,154 - 62,857,964 (+)NCBI
Celera4146,699,388 - 146,703,263 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gapdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,162,467 - 4,166,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,162,467 - 4,166,783 (+)NCBIChiLan1.0ChiLan1.0
GAPDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1126,583,895 - 6,587,729 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,583,895 - 6,587,729 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,665,218 - 6,669,170 (+)NCBIMhudiblu_PPA_v0panPan3
LOC100688969
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X51,925,654 - 51,926,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX42,758,798 - 42,759,848 (+)NCBI
ROS_Cfam_1.0X52,892,500 - 52,893,549 (+)NCBI
UMICH_Zoey_3.1X50,867,280 - 50,868,330 (+)NCBI
UNSW_CanFamBas_1.0X52,198,694 - 52,199,710 (+)NCBI
UU_Cfam_GSD_1.0X52,119,573 - 52,120,589 (+)NCBI
Gapdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,575,598 - 102,580,238 (-)NCBI
SpeTri2.0NW_0049367091,243,149 - 1,247,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAPDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,129,680 - 64,133,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,129,678 - 64,135,194 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,446,302 - 66,449,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q12-q21NCBI
GAPDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,569,029 - 6,572,877 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,653,527 - 1,657,405 (-)NCBIVero_WHO_p1.0
Gapdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248603,257,805 - 3,261,736 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110838217144838360Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111165485145165578Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112269957125356785Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112269957147052561Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114368732145656013Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115242853146429238Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115569842149572401Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115569842149572401Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115569842149572401Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115601042149601187Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115717516132601187Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116664897128519025Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116852888149736546Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117082986149736546Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120439808149736546Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124357314145656013Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1875
Count of miRNA genes:557
Interacting mature miRNAs:703
Transcripts:ENSMUST00000073605, ENSMUST00000117757, ENSMUST00000118875, ENSMUST00000144205, ENSMUST00000144588, ENSMUST00000147954, ENSMUST00000182052, ENSMUST00000182115, ENSMUST00000182277, ENSMUST00000182464, ENSMUST00000182670, ENSMUST00000183272
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY618199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI851476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU504528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ155387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ403054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G65758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU214026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF982306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073605   ⟹   ENSMUSP00000073289
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,138,817 - 125,143,430 (-)Ensembl
GRCm38.p6 Ensembl6125,161,854 - 125,166,467 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117757   ⟹   ENSMUSP00000113942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,138,816 - 125,143,430 (-)Ensembl
GRCm38.p6 Ensembl6125,161,853 - 125,166,467 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118875   ⟹   ENSMUSP00000113213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,138,817 - 125,142,736 (-)Ensembl
GRCm38.p6 Ensembl6125,161,854 - 125,165,773 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144205
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,139,806 - 125,141,879 (-)Ensembl
GRCm38.p6 Ensembl6125,162,843 - 125,164,916 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144588
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,141,560 - 125,142,568 (-)Ensembl
GRCm38.p6 Ensembl6125,164,597 - 125,165,605 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,138,816 - 125,139,490 (-)Ensembl
GRCm38.p6 Ensembl6125,161,853 - 125,162,527 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182052   ⟹   ENSMUSP00000138403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,140,138 - 125,142,566 (-)Ensembl
GRCm38.p6 Ensembl6125,163,175 - 125,165,603 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182115
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,139,834 - 125,142,553 (-)Ensembl
GRCm38.p6 Ensembl6125,162,871 - 125,165,590 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182277   ⟹   ENSMUSP00000138295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,140,251 - 125,142,566 (-)Ensembl
GRCm38.p6 Ensembl6125,163,288 - 125,165,603 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182464
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,139,734 - 125,140,302 (-)Ensembl
GRCm38.p6 Ensembl6125,162,771 - 125,163,339 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,140,309 - 125,142,566 (-)Ensembl
GRCm38.p6 Ensembl6125,163,346 - 125,165,603 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183272   ⟹   ENSMUSP00000138508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,139,027 - 125,142,539 (-)Ensembl
GRCm38.p6 Ensembl6125,162,064 - 125,165,576 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192506
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6125,138,678 - 125,141,966 (-)Ensembl
GRCm38.p6 Ensembl6125,161,715 - 125,165,003 (-)Ensembl
RefSeq Acc Id: NM_001289726   ⟹   NP_001276655
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396125,138,815 - 125,143,430 (-)NCBI
GRCm386125,161,852 - 125,166,467 (-)NCBI
Celera6126,831,711 - 126,836,323 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008084   ⟹   NP_032110
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396125,138,815 - 125,142,736 (-)NCBI
GRCm386125,161,852 - 125,165,773 (-)NCBI
MGSCv376125,111,870 - 125,115,601 (-)RGD
Celera6126,831,711 - 126,836,323 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036165840   ⟹   XP_036021733
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396125,138,815 - 125,142,682 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001276655 (Get FASTA)   NCBI Sequence Viewer  
  NP_032110 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021733 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37659 (Get FASTA)   NCBI Sequence Viewer  
  AAH82592 (Get FASTA)   NCBI Sequence Viewer  
  AAH83065 (Get FASTA)   NCBI Sequence Viewer  
  AAH83079 (Get FASTA)   NCBI Sequence Viewer  
  AAH83080 (Get FASTA)   NCBI Sequence Viewer  
  AAH83149 (Get FASTA)   NCBI Sequence Viewer  
  AAH85274 (Get FASTA)   NCBI Sequence Viewer  
  AAH85275 (Get FASTA)   NCBI Sequence Viewer  
  AAH85315 (Get FASTA)   NCBI Sequence Viewer  
  AAH91768 (Get FASTA)   NCBI Sequence Viewer  
  AAH92252 (Get FASTA)   NCBI Sequence Viewer  
  AAH92264 (Get FASTA)   NCBI Sequence Viewer  
  AAH92267 (Get FASTA)   NCBI Sequence Viewer  
  AAH92294 (Get FASTA)   NCBI Sequence Viewer  
  AAH93508 (Get FASTA)   NCBI Sequence Viewer  
  AAH94037 (Get FASTA)   NCBI Sequence Viewer  
  AAH95932 (Get FASTA)   NCBI Sequence Viewer  
  AAH96042 (Get FASTA)   NCBI Sequence Viewer  
  AAH96440 (Get FASTA)   NCBI Sequence Viewer  
  AAH96590 (Get FASTA)   NCBI Sequence Viewer  
  AAI10312 (Get FASTA)   NCBI Sequence Viewer  
  AAI45811 (Get FASTA)   NCBI Sequence Viewer  
  AAI45813 (Get FASTA)   NCBI Sequence Viewer  
  AAU89484 (Get FASTA)   NCBI Sequence Viewer  
  ABD77187 (Get FASTA)   NCBI Sequence Viewer  
  ADA57700 (Get FASTA)   NCBI Sequence Viewer  
  AHL58824 (Get FASTA)   NCBI Sequence Viewer  
  BAB21979 (Get FASTA)   NCBI Sequence Viewer  
  BAC38211 (Get FASTA)   NCBI Sequence Viewer  
  BAE24481 (Get FASTA)   NCBI Sequence Viewer  
  BAE26016 (Get FASTA)   NCBI Sequence Viewer  
  BAE27169 (Get FASTA)   NCBI Sequence Viewer  
  BAE28105 (Get FASTA)   NCBI Sequence Viewer  
  BAE28208 (Get FASTA)   NCBI Sequence Viewer  
  BAE35768 (Get FASTA)   NCBI Sequence Viewer  
  BAE35989 (Get FASTA)   NCBI Sequence Viewer  
  BAE37778 (Get FASTA)   NCBI Sequence Viewer  
  BAE40174 (Get FASTA)   NCBI Sequence Viewer  
  EDK99813 (Get FASTA)   NCBI Sequence Viewer  
  P16858 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032110   ⟸   NM_008084
- Peptide Label: isoform 2
- UniProtKB: P16858 (UniProtKB/Swiss-Prot),   D2KHZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276655   ⟸   NM_001289726
- Peptide Label: isoform 1
- UniProtKB: P16858 (UniProtKB/Swiss-Prot),   A0A0A0MQF6 (UniProtKB/TrEMBL),   D2KHZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000138508   ⟸   ENSMUST00000183272
RefSeq Acc Id: ENSMUSP00000113213   ⟸   ENSMUST00000118875
RefSeq Acc Id: ENSMUSP00000073289   ⟸   ENSMUST00000073605
RefSeq Acc Id: ENSMUSP00000138295   ⟸   ENSMUST00000182277
RefSeq Acc Id: ENSMUSP00000138403   ⟸   ENSMUST00000182052
RefSeq Acc Id: ENSMUSP00000113942   ⟸   ENSMUST00000117757
RefSeq Acc Id: XP_036021733   ⟸   XM_036165840
- Peptide Label: isoform X1
Protein Domains
Gp_dh_C   Gp_dh_N

Promoters
RGD ID:6848840
Promoter ID:MM_TRO:8528
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:MTR064810.6.2371.11
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366125,110,311 - 125,112,217 (-)MPROMDB
RGD ID:6839380
Promoter ID:MM_KWN:47624
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:AK160495_GM10481,   AY618568_GM5138,   OTTMUST00000067085,   OTTMUST00000067089
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366125,112,231 - 125,114,387 (-)MPROMDB
RGD ID:6839328
Promoter ID:MM_KWN:47625
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000067088
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366125,114,571 - 125,115,892 (-)MPROMDB
RGD ID:6839327
Promoter ID:MM_KWN:47626
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000118875,   OTTMUST00000067087
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366125,115,571 - 125,116,742 (-)MPROMDB
RGD ID:6839325
Promoter ID:MM_KWN:47627
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000117757
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366125,116,441 - 125,117,462 (-)MPROMDB
RGD ID:6891070
Promoter ID:EPDNEW_M8971
Type:initiation region
Name:Gapdh_1
Description:Mus musculus glyceraldehyde-3-phosphate dehydrogenase , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8972  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386125,165,605 - 125,165,665EPDNEW
RGD ID:6891042
Promoter ID:EPDNEW_M8972
Type:multiple initiation site
Name:Gapdh_2
Description:Mus musculus glyceraldehyde-3-phosphate dehydrogenase , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8971  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386125,166,547 - 125,166,607EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95640 AgrOrtholog
Ensembl Genes ENSMUSG00000057666 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000073289 UniProtKB/Swiss-Prot
  ENSMUSP00000113213 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113942 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000138295 UniProtKB/TrEMBL
  ENSMUSP00000138403 UniProtKB/TrEMBL
  ENSMUSP00000138508 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073605 UniProtKB/Swiss-Prot
  ENSMUST00000117757 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000118875 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000182052 UniProtKB/TrEMBL
  ENSMUST00000182277 UniProtKB/TrEMBL
  ENSMUST00000183272 UniProtKB/TrEMBL
InterPro GlycerAld/Erythrose_P_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GlycerAld_3-P_DH_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GlycerAld_3-P_DH_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyceraldehyde-3-P_DH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14433 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95640 ENTREZGENE
NCBI Gene 14433 ENTREZGENE
PANTHER PTHR10836 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gp_dh_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gp_dh_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gapdh PhenoGen
PIRSF GAP_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS G3PDHDRGNASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GAPDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Gp_dh_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs GAPDH-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQF6 ENTREZGENE, UniProtKB/TrEMBL
  D2KHZ9 ENTREZGENE, UniProtKB/TrEMBL
  G3P_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q2VWQ4_MOUSE UniProtKB/TrEMBL
  Q4VBD1_MOUSE UniProtKB/TrEMBL
  S4R1N5_MOUSE UniProtKB/TrEMBL
  S4R1W8_MOUSE UniProtKB/TrEMBL
  S4R257_MOUSE UniProtKB/TrEMBL
  W8QM43_MOUSE UniProtKB/TrEMBL
UniProt Secondary A6H6A8 UniProtKB/Swiss-Prot
  Q0QEU0 UniProtKB/Swiss-Prot
  Q3THM2 UniProtKB/Swiss-Prot
  Q3TUI2 UniProtKB/Swiss-Prot
  Q3UMT2 UniProtKB/Swiss-Prot
  Q4V783 UniProtKB/Swiss-Prot
  Q569X2 UniProtKB/Swiss-Prot
  Q569X5 UniProtKB/Swiss-Prot
  Q5U410 UniProtKB/Swiss-Prot