Gapdh (glyceraldehyde-3-phosphate dehydrogenase) - Rat Genome Database

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Gene: Gapdh (glyceraldehyde-3-phosphate dehydrogenase) Ictidomys tridecemlineatus
Analyze
Symbol: Gapdh
Name: glyceraldehyde-3-phosphate dehydrogenase
RGD ID: 12501281
Description: ENCODES a protein that exhibits aspartic-type endopeptidase inhibitor activity (ortholog); disordered domain specific binding (ortholog); enzyme binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); apoptotic process (ortholog); cAMP-mediated signaling (ortholog); PARTICIPATES IN electron transport chain pathway; Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); GAIT complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,575,598 - 102,580,238 (-)NCBI
SpeTri2.0NW_0049367091,243,149 - 1,247,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:17109825  


Genomics

Comparative Map Data
Gapdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,575,598 - 102,580,238 (-)NCBI
SpeTri2.0NW_0049367091,243,149 - 1,247,782 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAPDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl126,534,512 - 6,538,374 (+)EnsemblGRCh38hg38GRCh38
GRCh38126,534,517 - 6,538,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37126,643,683 - 6,647,537 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,513,918 - 6,517,797 (+)NCBINCBI36hg18NCBI36
Build 34126,513,944 - 6,517,797NCBI
Celera128,260,518 - 8,264,397 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef126,497,829 - 6,501,781 (+)NCBIHuRef
CHM1_1126,642,592 - 6,646,544 (+)NCBICHM1_1
Gapdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,138,815 - 125,143,430 (-)NCBIGRCm39mm39
GRCm39 Ensembl6125,138,678 - 125,143,430 (-)Ensembl
GRCm386125,161,852 - 125,166,467 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,161,715 - 125,166,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,111,870 - 125,115,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv366125,128,554 - 125,131,222 (-)NCBImm8
Celera6126,831,711 - 126,835,442 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.32NCBI
Gapdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24157,962,312 - 157,967,158 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4157,962,343 - 157,966,235 (-)Ensembl
Rnor_6.04157,676,336 - 157,680,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,676,595 - 157,679,962 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,693,580 - 224,697,455 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,282,215 - 161,286,090 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1962,857,154 - 62,857,964 (+)NCBI
Celera4146,699,388 - 146,703,263 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gapdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,162,467 - 4,166,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,162,467 - 4,166,783 (+)NCBIChiLan1.0ChiLan1.0
GAPDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1126,583,895 - 6,587,729 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,583,895 - 6,587,729 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,665,218 - 6,669,170 (+)NCBIMhudiblu_PPA_v0panPan3
LOC100688969
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X51,925,654 - 51,926,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX42,758,798 - 42,759,848 (+)NCBI
ROS_Cfam_1.0X52,892,500 - 52,893,549 (+)NCBI
UMICH_Zoey_3.1X50,867,280 - 50,868,330 (+)NCBI
UNSW_CanFamBas_1.0X52,198,694 - 52,199,710 (+)NCBI
UU_Cfam_GSD_1.0X52,119,573 - 52,120,589 (+)NCBI
GAPDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,129,680 - 64,133,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,129,678 - 64,135,194 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,446,302 - 66,449,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q12-q21NCBI
GAPDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,569,029 - 6,572,877 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,653,527 - 1,657,405 (-)NCBIVero_WHO_p1.0
Gapdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248603,257,805 - 3,261,736 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338350   ⟹   XP_005338407
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945102,575,598 - 102,580,238 (-)NCBI
SpeTri2.0NW_0049367091,243,149 - 1,247,782 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338407 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAQ82968 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338407   ⟸   XM_005338350
- UniProtKB: A0A287D887 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007538 ENTREZGENE
Ensembl Protein ENSSTOP00000029765 ENTREZGENE
NCBI Gene Gapdh ENTREZGENE
UniProt A0A287D887 ENTREZGENE