MUSK (muscle associated receptor tyrosine kinase) - Rat Genome Database

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Pathways
Gene: MUSK (muscle associated receptor tyrosine kinase) Sus scrofa
Analyze
Symbol: MUSK
Name: muscle associated receptor tyrosine kinase
RGD ID: 13971872
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN cochlea development (ortholog); long-term synaptic potentiation (ortholog); memory (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH congenital myasthenic syndrome 4C (ortholog); congenital myasthenic syndrome 9 (ortholog); Congenital Myasthenic Syndrome, with Facial Dysmorphism, associated with Acetylcholine Receptor Deficiency (ortholog); FOUND IN cell projection (ortholog); external side of plasma membrane (ortholog); neuromuscular junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: muscle, skeletal receptor tyrosine-protein kinase; muscle, skeletal, receptor tyrosine kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,650,710 - 251,756,608 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,650,151 - 251,758,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,535,445 - 282,564,190 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MUSK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,650,710 - 251,756,608 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11251,650,151 - 251,758,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,535,445 - 282,564,190 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MUSK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389110,668,791 - 110,806,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9110,668,656 - 110,806,558 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh379113,431,071 - 113,568,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369112,470,960 - 112,603,099 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349110,510,693 - 110,642,833NCBI
Celera983,932,761 - 84,062,557 (+)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef983,032,852 - 83,161,644 (+)NCBIHuRef
CHM1_19113,577,505 - 113,709,694 (+)NCBICHM1_1
T2T-CHM13v2.09122,838,447 - 122,978,207 (+)NCBIT2T-CHM13v2.0
Musk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,285,742 - 58,377,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,285,931 - 58,377,847 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38458,285,729 - 58,377,848 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,285,960 - 58,374,303 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37458,298,834 - 58,387,175 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36458,380,016 - 58,468,357 (+)NCBIMGSCv36mm8
Celera458,198,854 - 58,290,062 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.87NCBI
Musk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8577,853,560 - 77,967,653 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl577,853,736 - 77,964,338 (+)EnsemblGRCr8
mRatBN7.2573,058,427 - 73,169,696 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,058,121 - 73,171,932 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx574,950,396 - 75,053,703 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,772,006 - 76,875,299 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,744,136 - 76,847,436 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd577,909,032 - 78,012,669 (+)NCBI
Lyon_Normotensive579,575,655 - 79,679,280 (+)NCBI
Lyon_Hypertensive578,797,497 - 78,901,121 (+)NCBI
F344_StmMcwi572,660,492 - 72,765,511 (+)NCBI
Rnor_6.0575,392,790 - 75,498,694 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,392,790 - 75,498,694 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0579,542,952 - 79,649,636 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4576,273,430 - 76,388,614 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera571,894,778 - 71,996,416 (+)NCBICelera
RGSC_v3.1576,278,542 - 76,393,727 (+)NCBI
Cytogenetic Map5q24NCBI
Musk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541916,387,770 - 16,484,266 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541916,387,770 - 16,484,266 (-)NCBIChiLan1.0ChiLan1.0
MUSK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21128,609,032 - 28,747,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1928,616,248 - 28,749,362 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0981,814,766 - 81,947,341 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19109,980,748 - 110,107,480 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9109,980,748 - 110,107,480 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
MUSK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11165,552,320 - 65,642,165 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1165,551,889 - 65,642,349 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1163,954,775 - 64,044,628 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01166,682,701 - 66,788,272 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,682,615 - 66,772,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11165,202,004 - 65,291,277 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01165,223,782 - 65,329,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01165,913,828 - 66,003,578 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Musk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap14188,102,743 - 188,203,093 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024404947180,764,116 - 180,884,300 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365592,387,027 - 2,486,552 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365592,387,019 - 2,486,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MUSK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11280,602,903 - 80,738,848 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366603513,886,470 - 14,018,232 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11228,739,094 - 28,872,247 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Musk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624758733,380 - 829,192 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_004624758733,919 - 829,075 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl1223,117,219 - 23,213,111 (-)Ensembl
Musk
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1193,193,901 - 93,284,524 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in MUSK
3507 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 15 3 5 13 12 15 2 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000006001   ⟹   ENSSSCP00000005852
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,650,743 - 251,751,908 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000025482   ⟹   ENSSSCP00000019673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,650,710 - 251,751,907 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068085   ⟹   ENSSSCP00000073943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,650,718 - 251,756,608 (+)Ensembl
RefSeq Acc Id: XM_021074436   ⟹   XP_020930095
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,650,151 - 251,758,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021074440   ⟹   XP_020930099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,650,151 - 251,758,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021074443   ⟹   XP_020930102
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,650,152 - 251,758,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021074447   ⟹   XP_020930106
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,650,152 - 251,758,537 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020930102 (Get FASTA)   NCBI Sequence Viewer  
  XP_084848553 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000005852.4
  ENSSSCP00000019673.3
  ENSSSCP00000073943
  ENSSSCP00000073943.1
RefSeq Acc Id: XP_020930095   ⟸   XM_021074436
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020930099   ⟸   XM_021074440
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020930102   ⟸   XM_021074443
- Peptide Label: isoform X3
- UniProtKB: A0A5G2R9H4 (UniProtKB/TrEMBL),   F1SNC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930106   ⟸   XM_021074447
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSSSCP00000019673   ⟸   ENSSSCT00000025482
Ensembl Acc Id: ENSSSCP00000073943   ⟸   ENSSSCT00000068085
Ensembl Acc Id: ENSSSCP00000005852   ⟸   ENSSSCT00000006001
Protein Domains
FZ   Ig-like   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005456 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006001.4 UniProtKB/TrEMBL
  ENSSSCT00000025482.3 UniProtKB/TrEMBL
  ENSSSCT00000068085.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  RTK UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
NCBI Gene MUSK ENTREZGENE
PANTHER MUSCLE, SKELETAL RECEPTOR TYROSINE-PROTEIN KINASE UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/TrEMBL
PIRSF TyrPK_CSF1-R UniProtKB/TrEMBL
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A5G2R9H4 ENTREZGENE, UniProtKB/TrEMBL
  F1SNC9 ENTREZGENE, UniProtKB/TrEMBL
  I3L6M2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90486 ENTREZGENE