NDEL1 (nudE neurodevelopment protein 1 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: NDEL1 (nudE neurodevelopment protein 1 like 1) Homo sapiens
Analyze
Symbol: NDEL1
Name: nudE neurodevelopment protein 1 like 1
RGD ID: 1352165
HGNC Page HGNC:17620
Description: Enables identical protein binding activity. Involved in chromosome segregation; positive regulation of GTPase activity; and regulation of intracellular protein transport. Located in kinetochore. Biomarker of schizophrenia.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp451M0318; endooligopeptidase A; EOPA; MITAP1; mitosin-associated protein 1; mitosin-associated protein MITAP1; NDE1L1; NDE2; nuclear distribution protein nudE-like 1; nudE neurodevelopment protein 1-like 1; nudE nuclear distribution E homolog-like 1; nudE nuclear distribution gene E homolog (A. nidulans)-like 1; nudE nuclear distribution gene E homolog like 1; nude nuclear distribution gene e homolog like 1 (a. nidulans); nudE nuclear distribution gene E homolog-like 1; NUDE-like protein; NUDEL
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100128467  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,413,131 - 8,474,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,413,131 - 8,490,411 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,339,202 - 8,371,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,279,904 - 8,312,206 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,279,903 - 8,312,196NCBI
Celera178,370,018 - 8,402,309 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,238,370 - 8,270,684 (+)NCBIHuRef
CHM1_1178,348,024 - 8,380,341 (+)NCBICHM1_1
T2T-CHM13v2.0178,319,371 - 8,379,912 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Expression of DISC1 binding partners is reduced in schizophrenia and associated with DISC1 SNPs. Lipska BK, etal., Hum Mol Genet. 2006 Apr 15;15(8):1245-58. Epub 2006 Mar 1.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8619474   PMID:9110174   PMID:10737800   PMID:10931877   PMID:11163258   PMID:11163259   PMID:11163260   PMID:12477932   PMID:12506198   PMID:12556484   PMID:12621583   PMID:12796778  
PMID:12812986   PMID:12885786   PMID:14702039   PMID:14962739   PMID:14970193   PMID:15342556   PMID:15489334   PMID:15572112   PMID:15728732   PMID:16005531   PMID:16189514   PMID:16203747  
PMID:16291865   PMID:16344560   PMID:16682949   PMID:17035248   PMID:17043677   PMID:17060449   PMID:17207965   PMID:17494871   PMID:17600710   PMID:17997972   PMID:18347064   PMID:18400883  
PMID:18421979   PMID:18469341   PMID:18784752   PMID:18845247   PMID:19198602   PMID:19251251   PMID:19492042   PMID:19622634   PMID:19632097   PMID:19927128   PMID:20048338   PMID:20084519  
PMID:20168084   PMID:20360068   PMID:20462516   PMID:20880836   PMID:20936779   PMID:21036906   PMID:21092859   PMID:21283621   PMID:21832049   PMID:21873635   PMID:21948775   PMID:21998303  
PMID:22114287   PMID:22159412   PMID:22373868   PMID:22430153   PMID:22453242   PMID:22832604   PMID:22843697   PMID:23388542   PMID:24722188   PMID:24785679   PMID:25416956   PMID:25910212  
PMID:26186194   PMID:26476704   PMID:26496610   PMID:26638075   PMID:26851141   PMID:26972000   PMID:27173435   PMID:27371763   PMID:27432908   PMID:27546710   PMID:27777970   PMID:28514442  
PMID:29103808   PMID:29121065   PMID:29892012   PMID:29961565   PMID:30217970   PMID:30321766   PMID:31343991   PMID:31413325   PMID:31515488   PMID:31815665   PMID:32296183   PMID:32707033  
PMID:32814053   PMID:32838362   PMID:33187986   PMID:33961781   PMID:34079125   PMID:35182466   PMID:35271311   PMID:36192543   PMID:36215168   PMID:36858606   PMID:37086789   PMID:37499664  
PMID:38194050  


Genomics

Comparative Map Data
NDEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,413,131 - 8,474,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,413,131 - 8,490,411 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,339,202 - 8,371,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,279,904 - 8,312,206 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,279,903 - 8,312,196NCBI
Celera178,370,018 - 8,402,309 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,238,370 - 8,270,684 (+)NCBIHuRef
CHM1_1178,348,024 - 8,380,341 (+)NCBICHM1_1
T2T-CHM13v2.0178,319,371 - 8,379,912 (+)NCBIT2T-CHM13v2.0
Ndel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,712,260 - 68,743,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,712,260 - 68,762,684 (-)EnsemblGRCm39 Ensembl
GRCm381168,821,434 - 68,853,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,821,434 - 68,871,858 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,634,936 - 68,666,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,637,629 - 68,669,257 (-)NCBIMGSCv36mm8
Celera1175,766,319 - 75,797,740 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.09NCBI
Ndel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,001,435 - 54,080,909 (-)NCBIGRCr8
mRatBN7.21053,505,628 - 53,582,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,516,491 - 53,570,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,191,668 - 58,224,366 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,680,698 - 57,713,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,189,257 - 53,222,150 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,398,919 - 55,456,654 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,411,901 - 55,444,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,140,094 - 55,198,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,581,250 - 55,614,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11055,594,876 - 55,628,545 (-)NCBI
Celera1052,697,424 - 52,729,662 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ndel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,432,806 - 8,468,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,432,806 - 8,486,563 (-)NCBIChiLan1.0ChiLan1.0
NDEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,280,844 - 65,313,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,090,295 - 70,122,627 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,186,255 - 43,218,436 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11747,918,827 - 47,942,773 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1747,918,827 - 47,950,749 (-)Ensemblpanpan1.1panPan2
NDEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,187,614 - 33,244,483 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,204,452 - 33,266,052 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,323,255 - 33,402,505 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,290,630 - 33,369,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,307,740 - 33,375,499 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,257,900 - 33,337,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,213,196 - 33,292,473 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,393,012 - 33,472,138 (+)NCBIUU_Cfam_GSD_1.0
Ndel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,182,799 - 48,227,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,656,956 - 1,689,322 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,656,956 - 1,692,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,557,175 - 53,640,457 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,553,897 - 53,640,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,296,922 - 56,336,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,797,858 - 7,831,211 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,553,235 - 13,609,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478611,000,615 - 11,034,689 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,981,963 - 11,039,504 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDEL1
14 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p13.1(chr17:7750804-10112969)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052460]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052460]|See cases [RCV000052460] Chr17:7750804..10112969 [GRCh38]
Chr17:7654122..10016286 [GRCh37]
Chr17:7594847..9957011 [NCBI36]
Chr17:17p13.1		 pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:6307904-8842949)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|See cases [RCV000053407] Chr17:6307904..8842949 [GRCh38]
Chr17:6211224..8746266 [GRCh37]
Chr17:6151948..8686991 [NCBI36]
Chr17:17p13.2-13.1		 pathogenic
GRCh38/hg38 17p13.2-12(chr17:5732953-12095349)x3 copy number gain See cases [RCV000134851] Chr17:5732953..12095349 [GRCh38]
Chr17:5636273..11998666 [GRCh37]
Chr17:5576997..11939391 [NCBI36]
Chr17:17p13.2-12		 pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh38/hg38 17p13.1(chr17:7967712-8490279)x3 copy number gain See cases [RCV000141063] Chr17:7967712..8490279 [GRCh38]
Chr17:7871030..8393597 [GRCh37]
Chr17:7811755..8334322 [NCBI36]
Chr17:17p13.1		 uncertain significance
GRCh38/hg38 17p13.3-12(chr17:150732-14764202)x3 copy number gain See cases [RCV000142236] Chr17:150732..14764202 [GRCh38]
Chr17:525..14667519 [GRCh37]
Chr17:525..14608244 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh37/hg19 17p13.1(chr17:7241916-8692213)x1 copy number loss See cases [RCV000445992] Chr17:7241916..8692213 [GRCh37]
Chr17:17p13.1		 pathogenic
GRCh37/hg19 17p13.1(chr17:7929776-9995862)x3 copy number gain See cases [RCV000447853] Chr17:7929776..9995862 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.1(chr17:7431013-9868179)x3 copy number gain See cases [RCV000511388] Chr17:7431013..9868179 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.3-12(chr17:525-15027737)x3 copy number gain See cases [RCV000511786] Chr17:525..15027737 [GRCh37]
Chr17:17p13.3-12		 pathogenic
NM_030808.5(NDEL1):c.695C>T (p.Pro232Leu) single nucleotide variant not specified [RCV004289780] Chr17:8450948 [GRCh38]
Chr17:8354266 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-12(chr17:525-11186432)x3 copy number gain not provided [RCV000683866] Chr17:525..11186432 [GRCh37]
Chr17:17p13.3-12		 pathogenic
GRCh37/hg19 17p13.1(chr17:8219814-8676240)x3 copy number gain not provided [RCV000683885] Chr17:8219814..8676240 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.1(chr17:7676383-8350870)x3 copy number gain not provided [RCV000848522] Chr17:7676383..8350870 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.985C>A (p.Leu329Met) single nucleotide variant not specified [RCV004321791] Chr17:8466970 [GRCh38]
Chr17:8370288 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.1(chr17:7929776-9995862) copy number gain not specified [RCV002052588] Chr17:7929776..9995862 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.1(chr17:7241916-8692213) copy number loss not specified [RCV002052586] Chr17:7241916..8692213 [GRCh37]
Chr17:17p13.1		 pathogenic
GRCh38/hg38 17p13.1(chr17:7478195-8435524)x1 copy number loss See cases [RCV000053426] Chr17:7478195..8435524 [GRCh38]
Chr17:7381514..8338842 [GRCh37]
Chr17:7322238..8279567 [NCBI36]
Chr17:17p13.1		 pathogenic
NM_030808.5(NDEL1):c.868A>T (p.Asn290Tyr) single nucleotide variant not specified [RCV004210423] Chr17:8460084 [GRCh38]
Chr17:8363402 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.571A>G (p.Thr191Ala) single nucleotide variant not specified [RCV004218846] Chr17:8450824 [GRCh38]
Chr17:8354142 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.940A>C (p.Lys314Gln) single nucleotide variant not specified [RCV004223284] Chr17:8460156 [GRCh38]
Chr17:8363474 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.397A>G (p.Ile133Val) single nucleotide variant not specified [RCV004074029] Chr17:8448557 [GRCh38]
Chr17:8351875 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh38/hg38 17p13.3-12(chr17:165730-11404096)x3 copy number gain Chromosome 17p13.3 duplication syndrome [RCV003327726] Chr17:165730..11404096 [GRCh38]
Chr17:17p13.3-12		 pathogenic
NM_030808.5(NDEL1):c.914G>A (p.Arg305Gln) single nucleotide variant not specified [RCV004337772] Chr17:8460130 [GRCh38]
Chr17:8363448 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.997C>T (p.Arg333Cys) single nucleotide variant not specified [RCV004340502] Chr17:8466982 [GRCh38]
Chr17:8370300 [GRCh37]
Chr17:17p13.1		 uncertain significance
GRCh37/hg19 17p13.3-11.2(chr17:525-21510992)x3 copy number gain not specified [RCV003987215] Chr17:525..21510992 [GRCh37]
Chr17:17p13.3-11.2		 pathogenic
NM_030808.5(NDEL1):c.896A>G (p.Asn299Ser) single nucleotide variant not specified [RCV004477138] Chr17:8460112 [GRCh38]
Chr17:8363430 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.1013C>T (p.Pro338Leu) single nucleotide variant not specified [RCV004477122] Chr17:8466998 [GRCh38]
Chr17:8370316 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.20C>T (p.Pro7Leu) single nucleotide variant not specified [RCV004654595] Chr17:8444291 [GRCh38]
Chr17:8347609 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.995C>T (p.Ser332Leu) single nucleotide variant not specified [RCV004641374] Chr17:8466980 [GRCh38]
Chr17:8370298 [GRCh37]
Chr17:17p13.1		 uncertain significance
NM_030808.5(NDEL1):c.1004C>T (p.Ser335Leu) single nucleotide variant not specified [RCV004641375] Chr17:8466989 [GRCh38]
Chr17:8370307 [GRCh37]
Chr17:17p13.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5333
Count of miRNA genes:1066
Interacting mature miRNAs:1320
Transcripts:ENST00000299734, ENST00000334527, ENST00000380025, ENST00000402554, ENST00000578172, ENST00000579150, ENST00000579880, ENST00000580012, ENST00000580237, ENST00000580738, ENST00000581189, ENST00000581679, ENST00000582277, ENST00000582490, ENST00000582665, ENST00000582812, ENST00000583066, ENST00000583683, ENST00000584866, ENST00000585098
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597146567GWAS1242641_HCOVID-19 QTL GWAS1242641 (human)0.000002COVID-191784529298452930Human
596965574GWAS1085093_Hpsoriasis QTL GWAS1085093 (human)0.000002psoriasis1784241618424162Human
597448655GWAS1544729_Hpsoriasis QTL GWAS1544729 (human)0.000002psoriasis1784241618424162Human
597147329GWAS1243403_HCOVID-19 QTL GWAS1243403 (human)0.0000001COVID-191784500478450048Human
597533316GWAS1629390_Hcolor vision disorder QTL GWAS1629390 (human)0.000008color vision disorder1784198778419878Human

Markers in Region
SHGC-53475  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,354,304 - 8,354,466UniSTSGRCh37
Build 36178,295,029 - 8,295,191RGDNCBI36
Celera178,385,135 - 8,385,297RGD
Cytogenetic Map17p13.1UniSTS
HuRef178,253,495 - 8,253,657UniSTS
TNG Radiation Hybrid Map174734.0UniSTS
D17S1452E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,351,959 - 8,354,152UniSTSGRCh37
Build 36178,292,684 - 8,294,877RGDNCBI36
Celera178,382,789 - 8,384,983RGD
Cytogenetic Map17p13.1UniSTS
HuRef178,251,149 - 8,253,343UniSTS
NDEL1_8103  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,370,691 - 8,371,605UniSTSGRCh37
Build 36178,311,416 - 8,312,330RGDNCBI36
Celera178,401,519 - 8,402,433RGD
HuRef178,269,880 - 8,270,794UniSTS
STS-N53016  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,371,181 - 8,371,370UniSTSGRCh37
Build 36178,311,906 - 8,312,095RGDNCBI36
Celera178,402,009 - 8,402,198RGD
Cytogenetic Map17p13.1UniSTS
HuRef178,270,370 - 8,270,559UniSTS
GeneMap99-GB4 RH Map1755.15UniSTS
NCBI RH Map17249.5UniSTS
RH45856  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37178,354,304 - 8,354,433UniSTSGRCh37
Build 36178,295,029 - 8,295,158RGDNCBI36
Celera178,385,135 - 8,385,264RGD
Cytogenetic Map17p13.1UniSTS
HuRef178,253,495 - 8,253,624UniSTS
GeneMap99-GB4 RH Map1754.11UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 5 624 1951 465 2270 7304 6470 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001025579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047436861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA232258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA425741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF038203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF182078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF217798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI742227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW795298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX405713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY004871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP201698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX166766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA256375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB176966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN993952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R94775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000334527   ⟹   ENSP00000333982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,884 - 8,468,163 (+)Ensembl
Ensembl Acc Id: ENST00000380025   ⟹   ENSP00000369364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,900 - 8,468,160 (+)Ensembl
Ensembl Acc Id: ENST00000402554   ⟹   ENSP00000384963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,908 - 8,467,658 (+)Ensembl
Ensembl Acc Id: ENST00000578172
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,464,236 - 8,468,162 (+)Ensembl
Ensembl Acc Id: ENST00000579150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,413,132 - 8,432,167 (+)Ensembl
Ensembl Acc Id: ENST00000579880
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,861 - 8,446,780 (+)Ensembl
Ensembl Acc Id: ENST00000580012   ⟹   ENSP00000463351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,436,094 - 8,445,801 (+)Ensembl
Ensembl Acc Id: ENST00000580237   ⟹   ENSP00000464154
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,413,195 - 8,446,884 (+)Ensembl
Ensembl Acc Id: ENST00000580738
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,927 - 8,446,045 (+)Ensembl
Ensembl Acc Id: ENST00000581189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,436,651 - 8,448,577 (+)Ensembl
Ensembl Acc Id: ENST00000581679   ⟹   ENSP00000464634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,450,781 - 8,490,411 (+)Ensembl
Ensembl Acc Id: ENST00000582277   ⟹   ENSP00000464441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,448,604 - 8,461,384 (+)Ensembl
Ensembl Acc Id: ENST00000582490   ⟹   ENSP00000462759
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,922 - 8,445,840 (+)Ensembl
Ensembl Acc Id: ENST00000582665   ⟹   ENSP00000463430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,852 - 8,448,635 (+)Ensembl
Ensembl Acc Id: ENST00000582812   ⟹   ENSP00000462052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,413,131 - 8,448,597 (+)Ensembl
Ensembl Acc Id: ENST00000583066
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,436,034 - 8,445,747 (+)Ensembl
Ensembl Acc Id: ENST00000583683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,462,777 - 8,468,153 (+)Ensembl
Ensembl Acc Id: ENST00000584866   ⟹   ENSP00000462458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,914 - 8,445,724 (+)Ensembl
Ensembl Acc Id: ENST00000585098   ⟹   ENSP00000463492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl178,435,894 - 8,467,269 (+)Ensembl
RefSeq Acc Id: NM_001025579   ⟹   NP_001020750
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
GRCh37178,316,447 - 8,371,495 (+)NCBI
Build 36178,279,904 - 8,312,206 (+)NCBI Archive
HuRef178,238,370 - 8,270,684 (+)NCBI
CHM1_1178,348,024 - 8,380,341 (+)NCBI
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001330129   ⟹   NP_001317058
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030808   ⟹   NP_110435
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
GRCh37178,316,447 - 8,371,495 (+)NCBI
Build 36178,279,904 - 8,312,206 (+)NCBI Archive
HuRef178,238,370 - 8,270,684 (+)NCBI
CHM1_1178,348,024 - 8,380,341 (+)NCBI
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025183   ⟹   XP_016880672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,474,328 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025184   ⟹   XP_016880673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025186   ⟹   XP_016880675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025188   ⟹   XP_016880677
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047436860   ⟹   XP_047292816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,468,163 (+)NCBI
RefSeq Acc Id: XM_047436861   ⟹   XP_047292817
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,413,131 - 8,468,163 (+)NCBI
RefSeq Acc Id: XM_054317445   ⟹   XP_054173420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,342,053 - 8,379,912 (+)NCBI
RefSeq Acc Id: XM_054317446   ⟹   XP_054173421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
RefSeq Acc Id: XM_054317447   ⟹   XP_054173422
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,342,065 - 8,374,322 (+)NCBI
RefSeq Acc Id: XM_054317448   ⟹   XP_054173423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,319,371 - 8,374,322 (+)NCBI
RefSeq Acc Id: XM_054317449   ⟹   XP_054173424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
RefSeq Acc Id: XM_054317450   ⟹   XP_054173425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0178,342,053 - 8,374,322 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001020750 (Get FASTA)   NCBI Sequence Viewer  
  NP_001317058 (Get FASTA)   NCBI Sequence Viewer  
  NP_110435 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880672 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880673 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880675 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880677 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292816 (Get FASTA)   NCBI Sequence Viewer  
  XP_047292817 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173420 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173421 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173422 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173423 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173424 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173425 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF24516 (Get FASTA)   NCBI Sequence Viewer  
  AAF97497 (Get FASTA)   NCBI Sequence Viewer  
  AAG43425 (Get FASTA)   NCBI Sequence Viewer  
  AAH26101 (Get FASTA)   NCBI Sequence Viewer  
  BAG51605 (Get FASTA)   NCBI Sequence Viewer  
  BAG61503 (Get FASTA)   NCBI Sequence Viewer  
  CAD34820 (Get FASTA)   NCBI Sequence Viewer  
  CAD89957 (Get FASTA)   NCBI Sequence Viewer  
  EAW90051 (Get FASTA)   NCBI Sequence Viewer  
  EAW90052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000333982
  ENSP00000333982.7
  ENSP00000369364
  ENSP00000369364.4
  ENSP00000384963
  ENSP00000384963.3
  ENSP00000462052.1
  ENSP00000462458.1
  ENSP00000462759.1
  ENSP00000463351.1
  ENSP00000463430.1
  ENSP00000463492.1
  ENSP00000464154.1
  ENSP00000464441.1
  ENSP00000464634.1
GenBank Protein Q9GZM8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020750   ⟸   NM_001025579
- Peptide Label: isoform A
- UniProtKB: Q9GZM8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_110435   ⟸   NM_030808
- Peptide Label: isoform B
- UniProtKB: Q9GZM8 (UniProtKB/Swiss-Prot),   Q8TAR7 (UniProtKB/Swiss-Prot),   Q86T80 (UniProtKB/Swiss-Prot),   J3QT32 (UniProtKB/Swiss-Prot),   D3DTS0 (UniProtKB/Swiss-Prot),   B3KP93 (UniProtKB/Swiss-Prot),   Q9UH50 (UniProtKB/Swiss-Prot),   B4DS41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880672   ⟸   XM_017025183
- Peptide Label: isoform X1
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880675   ⟸   XM_017025186
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_016880673   ⟸   XM_017025184
- Peptide Label: isoform X2
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880677   ⟸   XM_017025188
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001317058   ⟸   NM_001330129
- Peptide Label: isoform C
- UniProtKB: A6NIZ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000463351   ⟸   ENST00000580012
Ensembl Acc Id: ENSP00000464154   ⟸   ENST00000580237
Ensembl Acc Id: ENSP00000464634   ⟸   ENST00000581679
Ensembl Acc Id: ENSP00000464441   ⟸   ENST00000582277
Ensembl Acc Id: ENSP00000463430   ⟸   ENST00000582665
Ensembl Acc Id: ENSP00000462759   ⟸   ENST00000582490
Ensembl Acc Id: ENSP00000462052   ⟸   ENST00000582812
Ensembl Acc Id: ENSP00000462458   ⟸   ENST00000584866
Ensembl Acc Id: ENSP00000333982   ⟸   ENST00000334527
Ensembl Acc Id: ENSP00000463492   ⟸   ENST00000585098
Ensembl Acc Id: ENSP00000384963   ⟸   ENST00000402554
Ensembl Acc Id: ENSP00000369364   ⟸   ENST00000380025
RefSeq Acc Id: XP_047292817   ⟸   XM_047436861
- Peptide Label: isoform X3
- UniProtKB: Q9GZM8 (UniProtKB/Swiss-Prot),   Q8TAR7 (UniProtKB/Swiss-Prot),   Q86T80 (UniProtKB/Swiss-Prot),   J3QT32 (UniProtKB/Swiss-Prot),   D3DTS0 (UniProtKB/Swiss-Prot),   B3KP93 (UniProtKB/Swiss-Prot),   Q9UH50 (UniProtKB/Swiss-Prot),   B4DS41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047292816   ⟸   XM_047436860
- Peptide Label: isoform X2
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173423   ⟸   XM_054317448
- Peptide Label: isoform X3
- UniProtKB: Q9GZM8 (UniProtKB/Swiss-Prot),   Q8TAR7 (UniProtKB/Swiss-Prot),   Q86T80 (UniProtKB/Swiss-Prot),   J3QT32 (UniProtKB/Swiss-Prot),   D3DTS0 (UniProtKB/Swiss-Prot),   B3KP93 (UniProtKB/Swiss-Prot),   Q9UH50 (UniProtKB/Swiss-Prot),   B4DS41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173420   ⟸   XM_054317445
- Peptide Label: isoform X1
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173424   ⟸   XM_054317449
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054173421   ⟸   XM_054317446
- Peptide Label: isoform X2
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173425   ⟸   XM_054317450
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054173422   ⟸   XM_054317447
- Peptide Label: isoform X2
- UniProtKB: B4DS41 (UniProtKB/TrEMBL)
Protein Domains
NUDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9GZM8-F1-model_v2 AlphaFold Q9GZM8 1-345 view protein structure

Promoters
RGD ID:6794371
Promoter ID:HG_KWN:24966
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000299734,   NM_001025579,   OTTHUMT00000226999
Position:
Human AssemblyChrPosition (strand)Source
Build 36178,279,594 - 8,280,094 (+)MPROMDB
RGD ID:7233949
Promoter ID:EPDNEW_H22721
Type:initiation region
Name:NDEL1_2
Description:nudE neurodevelopment protein 1 like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22722  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,413,172 - 8,413,232EPDNEW
RGD ID:7233951
Promoter ID:EPDNEW_H22722
Type:initiation region
Name:NDEL1_1
Description:nudE neurodevelopment protein 1 like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22721  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38178,435,884 - 8,435,944EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17620 AgrOrtholog
COSMIC NDEL1 COSMIC
Ensembl Genes ENSG00000166579 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000334527 ENTREZGENE
  ENST00000334527.12 UniProtKB/Swiss-Prot
  ENST00000380025 ENTREZGENE
  ENST00000380025.8 UniProtKB/TrEMBL
  ENST00000402554 ENTREZGENE
  ENST00000402554.7 UniProtKB/Swiss-Prot
  ENST00000580012.1 UniProtKB/TrEMBL
  ENST00000580237.5 UniProtKB/TrEMBL
  ENST00000581679.1 UniProtKB/TrEMBL
  ENST00000582277.5 UniProtKB/TrEMBL
  ENST00000582490.5 UniProtKB/TrEMBL
  ENST00000582665.5 UniProtKB/TrEMBL
  ENST00000582812.5 UniProtKB/TrEMBL
  ENST00000584866.1 UniProtKB/TrEMBL
  ENST00000585098.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000166579 GTEx
HGNC ID HGNC:17620 ENTREZGENE
Human Proteome Map NDEL1 Human Proteome Map
InterPro NUDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUDE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:81565 UniProtKB/Swiss-Prot
NCBI Gene 81565 ENTREZGENE
OMIM 607538 OMIM
PANTHER PTHR10921 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10921:SF0 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NUDE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134887314 PharmGKB
UniProt A6NIZ0 ENTREZGENE, UniProtKB/TrEMBL
  B3KP93 ENTREZGENE
  B4DS41 ENTREZGENE, UniProtKB/TrEMBL
  D3DTS0 ENTREZGENE
  J3KRK9_HUMAN UniProtKB/TrEMBL
  J3KSF2_HUMAN UniProtKB/TrEMBL
  J3KT16_HUMAN UniProtKB/TrEMBL
  J3QL31_HUMAN UniProtKB/TrEMBL
  J3QL85_HUMAN UniProtKB/TrEMBL
  J3QLD0_HUMAN UniProtKB/TrEMBL
  J3QRD2_HUMAN UniProtKB/TrEMBL
  J3QRZ1_HUMAN UniProtKB/TrEMBL
  J3QSD2_HUMAN UniProtKB/TrEMBL
  J3QT32 ENTREZGENE
  NDEL1_HUMAN UniProtKB/Swiss-Prot
  Q86T80 ENTREZGENE
  Q8TAR7 ENTREZGENE
  Q9GZM8 ENTREZGENE
  Q9UH50 ENTREZGENE
UniProt Secondary B3KP93 UniProtKB/Swiss-Prot
  D3DTS0 UniProtKB/Swiss-Prot
  J3QT32 UniProtKB/Swiss-Prot
  Q86T80 UniProtKB/Swiss-Prot
  Q8TAR7 UniProtKB/Swiss-Prot
  Q9UH50 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-12 NDEL1  nudE neurodevelopment protein 1 like 1  NDEL1  nudE neurodevelopment protein 1-like 1  Symbol and/or name change 5135510 APPROVED
2013-08-13 NDEL1  nudE neurodevelopment protein 1-like 1  NDEL1  nudE nuclear distribution E homolog (A. nidulans)-like 1  Symbol and/or name change 5135510 APPROVED
2012-03-01 NDEL1  nudE nuclear distribution E homolog (A. nidulans)-like 1  NDEL1  nudE nuclear distribution gene E homolog (A. nidulans)-like 1  Symbol and/or name change 5135510 APPROVED