Ndel1 (nudE neurodevelopment protein 1 like 1) - Rat Genome Database

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Gene: Ndel1 (nudE neurodevelopment protein 1 like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ndel1
Name: nudE neurodevelopment protein 1 like 1
RGD ID: 12521114
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); canonical Wnt signaling pathway (ortholog); cell migration (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); schizophrenia (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear distribution protein nudE-like 1; nudE neurodevelopment protein 1 like 1, transcript variant X1; nudE neurodevelopment protein 1 like 1, transcript variant X2; nudE neurodevelopment protein 1 like 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,182,799 - 48,227,535 (+)NCBI
SpeTri2.0NW_0049365951,656,956 - 1,692,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Ndel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,182,799 - 48,227,535 (+)NCBI
SpeTri2.0NW_0049365951,656,956 - 1,692,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,413,131 - 8,474,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl178,413,131 - 8,490,411 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,339,202 - 8,371,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,279,904 - 8,312,206 (+)NCBINCBI36hg18NCBI36
Build 34178,279,903 - 8,312,196NCBI
Celera178,370,018 - 8,402,309 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef178,238,370 - 8,270,684 (+)NCBIHuRef
CHM1_1178,348,024 - 8,380,341 (+)NCBICHM1_1
Ndel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,712,260 - 68,743,961 (-)NCBIGRCm39mm39
GRCm39 Ensembl1168,712,260 - 68,762,684 (-)Ensembl
GRCm381168,821,434 - 68,853,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,821,434 - 68,871,858 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,634,936 - 68,666,633 (-)NCBIGRCm37mm9NCBIm37
MGSCv361168,637,629 - 68,669,257 (-)NCBImm8
Celera1175,766,319 - 75,797,740 (-)NCBICelera
Cytogenetic Map11B3NCBI
Ndel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21053,505,628 - 53,582,025 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1053,516,491 - 53,570,907 (-)Ensembl
Rnor_6.01055,398,919 - 55,456,654 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,411,901 - 55,444,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,140,094 - 55,198,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,581,250 - 55,614,926 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11055,594,876 - 55,628,545 (-)NCBI
Celera1052,697,424 - 52,729,662 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ndel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,432,806 - 8,468,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,432,806 - 8,486,563 (-)NCBIChiLan1.0ChiLan1.0
NDEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11747,918,827 - 47,942,773 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01743,186,255 - 43,218,436 (-)NCBIMhudiblu_PPA_v0panPan3
NDEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,187,614 - 33,244,483 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,204,452 - 33,266,052 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,323,255 - 33,402,505 (+)NCBI
ROS_Cfam_1.0533,290,630 - 33,369,996 (+)NCBI
ROS_Cfam_1.0 Ensembl533,307,740 - 33,375,499 (+)Ensembl
UMICH_Zoey_3.1533,257,900 - 33,337,132 (+)NCBI
UNSW_CanFamBas_1.0533,213,196 - 33,292,473 (+)NCBI
UU_Cfam_GSD_1.0533,393,012 - 33,472,138 (+)NCBI
NDEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,547,009 - 53,642,406 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,553,897 - 53,640,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,296,922 - 56,336,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,797,858 - 7,831,211 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,553,235 - 13,609,816 (-)NCBIVero_WHO_p1.0
Ndel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,981,963 - 11,039,504 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005332858   ⟹   XP_005332915
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560248,182,799 - 48,214,930 (+)NCBI
SpeTri2.0NW_0049365951,656,956 - 1,689,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013361743   ⟹   XP_013217197
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560248,182,799 - 48,219,301 (+)NCBI
SpeTri2.0NW_0049365951,656,956 - 1,692,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269435   ⟹   XP_040125369
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560248,182,799 - 48,227,535 (+)NCBI
RefSeq Acc Id: XR_005726491
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560248,182,799 - 48,214,930 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005332915   ⟸   XM_005332858
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013217197   ⟸   XM_013361743
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040125369   ⟸   XM_040269435
- Peptide Label: isoform X2
Protein Domains
NUDE_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027930 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018170 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025257 UniProtKB/TrEMBL
InterPro NDEL1 UniProtKB/TrEMBL
  NUDE UniProtKB/TrEMBL
  NUDE_dom UniProtKB/TrEMBL
NCBI Gene Ndel1 ENTREZGENE
PANTHER PTHR10921 UniProtKB/TrEMBL
  PTHR10921:SF0 UniProtKB/TrEMBL
Pfam NUDE_C UniProtKB/TrEMBL
UniProt I3N1C4_ICTTR UniProtKB/TrEMBL