Ndel1 (nudE neurodevelopment protein 1 like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ndel1 (nudE neurodevelopment protein 1 like 1) Mus musculus
Analyze
Symbol: Ndel1
Name: nudE neurodevelopment protein 1 like 1
RGD ID: 732510
MGI Page MGI
Description: Enables identical protein binding activity and tubulin binding activity. Involved in several processes, including insulin receptor signaling pathway; lysosome localization; and regulation of plasma membrane bounded cell projection organization. Acts upstream of or within several processes, including cytoskeleton organization; generation of neurons; and transport along microtubule. Located in several cellular components, including axon hillock; cytoskeleton; and synaptic vesicle. Part of microtubule associated complex. Is expressed in several structures, including central nervous system; craniocervical region bone; integumental system; metanephros; and sensory organ. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2600006O07Rik; MITAP1; mNud; mNudE-L; mNudel; nuclear disribution gene E like; nuclear distribution gene E-like homolog 1; nuclear distribution protein nudE-like 1; nudel; protein mNudE-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,712,260 - 68,743,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,712,260 - 68,762,684 (-)EnsemblGRCm39 Ensembl
GRCm381168,821,434 - 68,853,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,821,434 - 68,871,858 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,634,936 - 68,666,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,637,629 - 68,669,257 (-)NCBIMGSCv36mm8
Celera1175,766,319 - 75,797,740 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Expression of DISC1 binding partners is reduced in schizophrenia and associated with DISC1 SNPs. Lipska BK, etal., Hum Mol Genet. 2006 Apr 15;15(8):1245-58. Epub 2006 Mar 1.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Disrupted-in-Schizophrenia-1 (DISC-1): mutant truncation prevents binding to NudE-like (NUDEL) and inhibits neurite outgrowth. Ozeki Y, etal., Proc Natl Acad Sci U S A 2003 Jan 7;100(1):289-94.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11163259   PMID:11163260   PMID:11231056   PMID:11517264   PMID:12477932   PMID:12520002   PMID:12796778  
PMID:12904583   PMID:12950100   PMID:14610273   PMID:14681479   PMID:14962739   PMID:15147871   PMID:15208636   PMID:15473966   PMID:15473967   PMID:15489334   PMID:15782199   PMID:15797709  
PMID:16107726   PMID:16141072   PMID:16141073   PMID:16203747   PMID:16944949   PMID:16959763   PMID:17060449   PMID:17825401   PMID:17997972   PMID:18331715   PMID:18431495   PMID:18799693  
PMID:18809722   PMID:18973680   PMID:18983980   PMID:19521566   PMID:19668197   PMID:19927128   PMID:20007476   PMID:20624590   PMID:21092859   PMID:21267068   PMID:21282465   PMID:21423666  
PMID:21677750   PMID:21844209   PMID:21873635   PMID:21948775   PMID:22114287   PMID:22875938   PMID:24030547   PMID:24194600   PMID:24680936   PMID:24785679   PMID:24812355   PMID:24952961  
PMID:25186760   PMID:25698733   PMID:26496610   PMID:26844830   PMID:27298008   PMID:27307241   PMID:27371763   PMID:27777970   PMID:27889896   PMID:28057765   PMID:29961565   PMID:32325033  
PMID:32423231   PMID:33615226   PMID:34133714   PMID:34319758   PMID:35011575  


Genomics

Comparative Map Data
Ndel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,712,260 - 68,743,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,712,260 - 68,762,684 (-)EnsemblGRCm39 Ensembl
GRCm381168,821,434 - 68,853,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,821,434 - 68,871,858 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,634,936 - 68,666,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,637,629 - 68,669,257 (-)NCBIMGSCv36mm8
Celera1175,766,319 - 75,797,740 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.09NCBI
NDEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,413,131 - 8,474,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,413,131 - 8,490,411 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,339,202 - 8,371,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,279,904 - 8,312,206 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,279,903 - 8,312,196NCBI
Celera178,370,018 - 8,402,309 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,238,370 - 8,270,684 (+)NCBIHuRef
CHM1_1178,348,024 - 8,380,341 (+)NCBICHM1_1
T2T-CHM13v2.0178,319,371 - 8,379,912 (+)NCBIT2T-CHM13v2.0
Ndel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,001,435 - 54,080,909 (-)NCBIGRCr8
mRatBN7.21053,505,628 - 53,582,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,516,491 - 53,570,907 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,191,668 - 58,224,366 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,680,698 - 57,713,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,189,257 - 53,222,150 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,398,919 - 55,456,654 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,411,901 - 55,444,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,140,094 - 55,198,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,581,250 - 55,614,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11055,594,876 - 55,628,545 (-)NCBI
Celera1052,697,424 - 52,729,662 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ndel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,432,806 - 8,468,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,432,806 - 8,486,563 (-)NCBIChiLan1.0ChiLan1.0
NDEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,280,844 - 65,313,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,090,295 - 70,122,627 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,186,255 - 43,218,436 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11747,918,827 - 47,942,773 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1747,918,827 - 47,950,749 (-)Ensemblpanpan1.1panPan2
NDEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,187,614 - 33,244,483 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,204,452 - 33,266,052 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,323,255 - 33,402,505 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,290,630 - 33,369,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,307,740 - 33,375,499 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,257,900 - 33,337,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,213,196 - 33,292,473 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,393,012 - 33,472,138 (+)NCBIUU_Cfam_GSD_1.0
Ndel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,182,799 - 48,227,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,656,956 - 1,689,322 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,656,956 - 1,692,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,557,175 - 53,640,457 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,553,897 - 53,640,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,296,922 - 56,336,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,797,858 - 7,831,211 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605913,553,235 - 13,609,816 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478611,000,615 - 11,034,689 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,981,963 - 11,039,504 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndel1
1077 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1144
Count of miRNA genes:548
Interacting mature miRNAs:644
Transcripts:ENSMUST00000018880, ENSMUST00000101017, ENSMUST00000108672, ENSMUST00000127469, ENSMUST00000143899, ENSMUST00000144300
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse

Markers in Region
Ndel1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS
Ndel1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF290472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF323918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY124052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ092278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000018880   ⟹   ENSMUSP00000018880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,712,260 - 68,743,961 (-)Ensembl
GRCm38.p6 Ensembl1168,821,434 - 68,853,135 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101017   ⟹   ENSMUSP00000098579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,720,129 - 68,762,684 (-)Ensembl
GRCm38.p6 Ensembl1168,829,303 - 68,871,858 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108672   ⟹   ENSMUSP00000104312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,720,144 - 68,743,867 (-)Ensembl
GRCm38.p6 Ensembl1168,829,318 - 68,853,041 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,730,740 - 68,755,819 (-)Ensembl
GRCm38.p6 Ensembl1168,839,914 - 68,864,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,712,936 - 68,730,746 (-)Ensembl
GRCm38.p6 Ensembl1168,822,110 - 68,839,920 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,727,008 - 68,750,822 (-)Ensembl
GRCm38.p6 Ensembl1168,836,182 - 68,859,996 (-)Ensembl
RefSeq Acc Id: NM_001363304   ⟹   NP_001350233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,712,260 - 68,743,961 (-)NCBI
GRCm381168,821,434 - 68,853,135 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001363305   ⟹   NP_001350234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,712,260 - 68,743,961 (-)NCBI
GRCm381168,821,434 - 68,853,135 (-)NCBI
Sequence:
RefSeq Acc Id: NM_023668   ⟹   NP_076157
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,712,260 - 68,743,961 (-)NCBI
GRCm381168,821,434 - 68,853,135 (-)NCBI
MGSCv371168,634,936 - 68,666,633 (-)RGD
Celera1175,766,319 - 75,797,740 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030246442   ⟹   XP_030102302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,712,260 - 68,743,952 (-)NCBI
GRCm381168,821,434 - 68,853,146 (-)NCBI
Sequence:
RefSeq Acc Id: NP_076157   ⟸   NM_023668
- Peptide Label: isoform 1
- UniProtKB: Q9D0Q4 (UniProtKB/Swiss-Prot),   Q9EPT6 (UniProtKB/Swiss-Prot),   Q9ERR1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102302   ⟸   XM_030246442
- Peptide Label: isoform X1
- UniProtKB: Q9ERR1 (UniProtKB/Swiss-Prot),   Q9D0Q4 (UniProtKB/Swiss-Prot),   Q9EPT6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001350234   ⟸   NM_001363305
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001350233   ⟸   NM_001363304
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000098579   ⟸   ENSMUST00000101017
RefSeq Acc Id: ENSMUSP00000104312   ⟸   ENSMUST00000108672
RefSeq Acc Id: ENSMUSP00000018880   ⟸   ENSMUST00000018880

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ERR1-F1-model_v2 AlphaFold Q9ERR1 1-345 view protein structure

Promoters
RGD ID:6821406
Promoter ID:MM_KWN:7995
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000013286
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,653,196 - 68,653,696 (-)MPROMDB
RGD ID:6821407
Promoter ID:MM_KWN:7996
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000013283,   UC007JOD.1,   UC007JOE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,666,476 - 68,667,477 (-)MPROMDB
RGD ID:8675118
Promoter ID:EPDNEW_M15589
Type:initiation region
Name:Ndel1_1
Description:Mus musculus nudE neurodevelopment protein 1 like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15590  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381168,853,065 - 68,853,125EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1932915 AgrOrtholog
Ensembl Genes ENSMUSG00000018736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018880 ENTREZGENE
  ENSMUST00000018880.14 UniProtKB/Swiss-Prot
  ENSMUST00000101017.9 UniProtKB/Swiss-Prot
  ENSMUST00000108672.2 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.1080 UniProtKB/Swiss-Prot
InterPro NUDE UniProtKB/Swiss-Prot
  NUDE_dom UniProtKB/Swiss-Prot
KEGG Report mmu:83431 UniProtKB/Swiss-Prot
MGD MGI:1932915 ENTREZGENE
NCBI Gene 83431 ENTREZGENE
PANTHER PTHR10921 UniProtKB/Swiss-Prot
  PTHR10921:SF0 UniProtKB/Swiss-Prot
Pfam NUDE_C UniProtKB/Swiss-Prot
PhenoGen Ndel1 PhenoGen
UniProt NDEL1_MOUSE UniProtKB/Swiss-Prot
  Q9D0Q4 ENTREZGENE
  Q9EPT6 ENTREZGENE
  Q9ERR1 ENTREZGENE
UniProt Secondary Q9D0Q4 UniProtKB/Swiss-Prot
  Q9EPT6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Ndel1  nudE neurodevelopment protein 1 like 1    nuclear distribution gene E-like homolog 1 (A. nidulans)  Symbol and/or name change 5135510 APPROVED