SLC13A5 (solute carrier family 13 member 5) - Rat Genome Database

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Gene: SLC13A5 (solute carrier family 13 member 5) Homo sapiens
Analyze
Symbol: SLC13A5
Name: solute carrier family 13 member 5
RGD ID: 1351292
HGNC Page HGNC:23089
Description: Enables citrate transmembrane transporter activity; identical protein binding activity; and organic acid:sodium symporter activity. Involved in carboxylic acid transport and cellular response to lithium ion. Located in cytosol; nucleoplasm; and plasma membrane. Implicated in developmental and epileptic encephalopathy 25.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DEE25; DKFZp686E17257; EIEE25; INDY; mammalian INDY homolog; MGC138356; mIndy; Na(+)/citrate cotransporter; NACT; sodium-coupled citrate transporter; sodium-dependent citrate transporter; sodium-dependent dicarboxylate transporter; solute carrier family 13 (sodium-dependent citrate transporter), member 5; solute carrier family 13, member 5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,684,719 - 6,713,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,684,719 - 6,713,377 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,588,038 - 6,616,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,528,762 - 6,557,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,528,764 - 6,557,388NCBI
Celera176,613,818 - 6,642,517 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,483,579 - 6,512,271 (-)NCBIHuRef
CHM1_1176,598,274 - 6,626,972 (-)NCBICHM1_1
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
SLC13A5Humancommon variable immunodeficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Common variable immunodeficiencyClinVarPMID:28492532
SLC13A5Humancongenital myasthenic syndrome 2A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myasthenic syndrome 2AClinVarPMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:24995870 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:25741868 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVar 
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:39825153
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:24995870 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:16199547 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:17576681 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:26467025 and PMID:28492532
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:24033266 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:28492532 and PMID:30054523
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:25741868 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25ClinVarPMID:16199547 more ...
SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868
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SLC13A5Humansteatotic liver disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26303333
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SLC13A5Humandevelopmental and epileptic encephalopathy 25  IAGP 7240710 OMIM 

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Original Reference(s)
SLC13A5Human1,2-dichloroethane decreases expressionISOSlc13a5 (Mus musculus)6480464ethylene dichloride results in decreased expression of SLC13A5 mRNACTDPMID:28960355
SLC13A5Human1,2-dimethylhydrazine decreases expressionISOSlc13a5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SLC13A5 mRNACTDPMID:22206623
SLC13A5Human17beta-estradiol decreases expressionISOSlc13a5 (Mus musculus)6480464Estradiol results in decreased expression of SLC13A5 mRNACTDPMID:28476547
SLC13A5Human17beta-estradiol increases expressionISOSlc13a5 (Mus musculus)6480464Estradiol results in increased expression of SLC13A5 mRNACTDPMID:39298647
SLC13A5Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of SLC13A5 mRNACTDPMID:30165855
SLC13A5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SLC13A5 mRNACTDPMID:22298810
SLC13A5Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOSlc13a5 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of SLC13A5 mRNACTDPMID:26290441
SLC13A5Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc13a5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC13A5 mRNACTDPMID:26303333
SLC13A5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc13a5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of SLC13A5 mRNACTDPMID:22298810
SLC13A5Human2,4-dinitrotoluene affects expressionISOSlc13a5 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of SLC13A5 mRNACTDPMID:21346803
SLC13A5Human2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of SLC13A5 mRNACTDPMID:30851411
SLC13A5Human3-hydroxybutyric acid decreases abundanceEXP 6480464SLC13A5 protein results in decreased abundance of 3-Hydroxybutyric AcidCTDPMID:32634519
SLC13A5Human3-methylcholanthrene increases expressionISOSlc13a5 (Rattus norvegicus)6480464Methylcholanthrene results in increased expression of SLC13A5 mRNACTDPMID:26303333
SLC13A5Human4,4'-sulfonyldiphenol decreases expressionISOSlc13a5 (Mus musculus)6480464bisphenol S results in decreased expression of SLC13A5 mRNACTDPMID:39298647
SLC13A5Human5-aza-2'-deoxycytidine affects expressionEXP 6480464Decitabine affects the expression of SLC13A5 mRNACTDPMID:23300844
SLC13A5Human5-fluorouracil decreases response to substanceEXP 6480464SLC13A5 protein results in decreased susceptibility to FluorouracilCTDPMID:32634519
SLC13A5Human6-propyl-2-thiouracil decreases expressionISOSlc13a5 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of SLC13A5 mRNACTDPMID:24780913
SLC13A5Humanacetoacetic acid decreases abundanceEXP 6480464SLC13A5 protein results in decreased abundance of acetoacetic acidCTDPMID:32634519
SLC13A5Humanaflatoxin B1 increases expressionISOSlc13a5 (Mus musculus)6480464Aflatoxin B1 results in increased expression of SLC13A5 mRNACTDPMID:19770486
SLC13A5Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of SLC13A5 intronCTDPMID:30157460

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Biological Process
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Original Reference(s)
SLC13A5Humanalpha-ketoglutarate transport involved_inIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humanalpha-ketoglutarate transport involved_inIDA 150520179 PMID:26324167UniProtPMID:26324167
SLC13A5Humancellular response to lithium ion involved_inIDA 150520179 PMID:26324167UniProtPMID:26324167
SLC13A5Humancellular response to lithium ion involved_inIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humancitrate transport  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:12177002 more ...
SLC13A5Humancitrate transport involved_inIBAMGI:3037150 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humancitrate transport involved_inIDA 150520179 PMID:12445824 more ...UniProtPMID:12445824 more ...
SLC13A5Humancitrate transport involved_inIMP 150520179 PMID:30054523UniProtPMID:30054523
SLC13A5Humancitrate transport acts_upstream_of_or_withinIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humanfumarate transport involved_inIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humanfumarate transport involved_inIBAMGI:3037150 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humanfumarate transport involved_inIDA 150520179 PMID:26324167UniProtPMID:26324167
SLC13A5Humanmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
SLC13A5Humanorganic acid transmembrane transport involved_inIEAGO:0005343150520179 GOCGO_REF:0000108
SLC13A5Humanoxaloacetate transport involved_inIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humanoxaloacetate transport involved_inIBAMGI:3037150 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humanoxaloacetate transport involved_inIDA 150520179 PMID:26324167UniProtPMID:26324167
SLC13A5Humansodium ion transmembrane transport involved_inIEAGO:0015370150520179 GOCGO_REF:0000108
SLC13A5Humansodium ion transport involved_inIEAUniProtKB-KW:KW-0739150520179 UniProtGO_REF:0000043
SLC13A5Humansuccinate transmembrane transport involved_inIEAGO:0015141150520179 GOCGO_REF:0000108
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Cellular Component
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SLC13A5Humanbasolateral plasma membrane  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:16973915 and REF_RGD_ID:2303799
SLC13A5Humancytosol located_inIDA 150520179 HPAGO_REF:0000052
SLC13A5Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLC13A5Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLC13A5Humanmembrane located_inIEAInterPro:IPR001898150520179 InterProGO_REF:0000002
SLC13A5Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
SLC13A5Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
SLC13A5Humanplasma membrane is_active_inIBAFB:FBgn0036816 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humanplasma membrane located_inTAS 150520179 ReactomeReactome:R-HSA-433104
SLC13A5Humanplasma membrane located_inIDA 150520179 PMID:26384929HPAGO_REF:0000052 and PMID:26384929
SLC13A5Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
SLC13A5Humanplasma membrane located_inIMP 150520179 PMID:30054523UniProtPMID:30054523
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Molecular Function
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Original Reference(s)
SLC13A5Humancitrate transmembrane transporter activity  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:12177002 more ...
SLC13A5Humancitrate transmembrane transporter activity enablesIBAMGI:3037150 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humancitrate transmembrane transporter activity enablesIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humancitrate transmembrane transporter activity enablesIDA 150520179 PMID:21264516 and PMID:26176240ARUK-UCLPMID:21264516 and PMID:26176240
SLC13A5Humancitrate transmembrane transporter activity enablesTAS 150520179 ReactomeReactome:R-HSA-433104
SLC13A5Humancitrate transmembrane transporter activity enablesIMP 150520179 PMID:30054523UniProtPMID:30054523
SLC13A5Humanidentical protein binding enablesIPIUniProtKB:Q86YT5-1150520179 PMID:33597751IntActPMID:33597751
SLC13A5Humanorganic acid:sodium symporter activity  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:12177002 more ...
SLC13A5Humanorganic acid:sodium symporter activity enablesIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humanorganic acid:sodium symporter activity enablesIDA 150520179 PMID:12445824 more ...UniProtPMID:12445824 more ...
SLC13A5Humanprotein binding enablesIPIUniProtKB:Q05639150520179 PMID:28514442 and PMID:33961781IntActPMID:28514442 and PMID:33961781
SLC13A5Humanprotein binding enablesIPIUniProtKB:A8MQ03 more ...150520179 PMID:32296183IntActPMID:32296183
SLC13A5Humansodium:dicarboxylate symporter activity  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:12177002 and REF_RGD_ID:633417
SLC13A5Humansodium:dicarboxylate symporter activity enablesIBAPANTHER:PTN002568167 and Slc13a5 (Rattus norvegicus)150520179 GO_CentralGO_REF:0000033
SLC13A5Humansolute:sodium symporter activity enablesIEAARBA:ARBA00034186150520179 UniProtGO_REF:0000117
SLC13A5Humansuccinate transmembrane transporter activity  ISOSlc13a5 (Rattus norvegicus)9068941 RGDPMID:12177002 more ...
SLC13A5Humansuccinate transmembrane transporter activity enablesIBAMGI:3037150 more ...150520179 GO_CentralGO_REF:0000033
SLC13A5Humansuccinate transmembrane transporter activity enablesIEAUniProtKB:Q67BT3 and ensembl:ENSMUSP00000021161150520179 EnsemblGO_REF:0000107
SLC13A5Humansymporter activity enablesIEAUniProtKB-KW:KW-0769150520179 UniProtGO_REF:0000043
SLC13A5Humantransmembrane transporter activity enablesIEAInterPro:IPR001898150520179 InterProGO_REF:0000002
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1 to 20 of 83 rows
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Original Reference(s)
SLC13A5HumanAbnormal cerebral white matter morphology  IAGP 8699517 HPOMIM:615905
SLC13A5HumanAbnormal corpus callosum morphology  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAbnormal dental enamel morphology  IAGP 8699517 HPOORPHA:1946
SLC13A5HumanAbnormal involuntary eye movements  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAbnormal myelination  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAbnormality of coordination  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAbnormality of dental color  IAGP 8699517 HPOORPHA:1946
SLC13A5HumanAbnormality of vision  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAbsent speech  IAGP 8699517 HPOMIM:615905
SLC13A5HumanAmelogenesis imperfecta  IAGP 8699517 HPOORPHA:1946
SLC13A5HumanAmelogenesis imperfecta  IAGP 8699517 HPOMIM:615905
SLC13A5HumanAtaxia  IAGP 8699517 HPOMIM:615905
SLC13A5HumanAtaxia  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAttention deficit hyperactivity disorder  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAtypical behavior  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAutism  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:615905
SLC13A5HumanAxial hypotonia  IAGP 8699517 HPOMIM:615905
SLC13A5HumanBrain atrophy  IAGP 8699517 HPOORPHA:442835
SLC13A5HumanCerebral atrophy  IAGP 8699517 HPOORPHA:442835
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Original Reference(s)
SLC13A5HumanEpileptic encephalopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:32581362
SLC13A5HumanEpileptic encephalopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:32581362
SLC13A5HumanGlobal developmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:25558065
SLC13A5HumanMicrocephaly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868 and PMID:28492532

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:12445824   PMID:12477932   PMID:12826022   PMID:12915942   PMID:14702039   PMID:15489334   PMID:16211368   PMID:16344560   PMID:16973915   PMID:17395152   PMID:18194662   PMID:18826381  
PMID:20379614   PMID:21156036   PMID:21264516   PMID:21873635   PMID:21873665   PMID:22566634   PMID:23177988   PMID:23506872   PMID:24114175   PMID:24222346   PMID:24816252   PMID:24995870  
PMID:25628225   PMID:26176240   PMID:26324167   PMID:26384929   PMID:26620127   PMID:27261973   PMID:27600704   PMID:27913086   PMID:28065597   PMID:28264506   PMID:28514442   PMID:28655760  
PMID:28821606   PMID:30054523   PMID:32152229   PMID:32296183   PMID:32551328   PMID:33063863   PMID:33200910   PMID:33544126   PMID:33597751   PMID:33797191   PMID:33961781   PMID:34323067  
PMID:34525352   PMID:37689798   PMID:38113697  



SLC13A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,684,719 - 6,713,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,684,719 - 6,713,377 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,588,038 - 6,616,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,528,762 - 6,557,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,528,764 - 6,557,388NCBI
Celera176,613,818 - 6,642,517 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,483,579 - 6,512,271 (-)NCBIHuRef
CHM1_1176,598,274 - 6,626,972 (-)NCBICHM1_1
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBIT2T-CHM13v2.0
Slc13a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,132,816 - 72,158,092 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,132,815 - 72,158,048 (-)EnsemblGRCm39 Ensembl
GRCm381172,241,990 - 72,267,295 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,241,989 - 72,267,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,055,496 - 72,080,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,059,700 - 72,082,760 (-)NCBIMGSCv36mm8
Celera1179,768,466 - 79,774,318 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.95NCBI
Slc13a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,364,806 - 57,389,500 (-)NCBIGRCr8
mRatBN7.21056,866,249 - 56,891,189 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,866,249 - 56,890,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,529,271 - 61,553,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,017,750 - 61,041,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,516,827 - 56,540,850 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01058,806,581 - 58,835,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,810,058 - 58,834,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,550,465 - 58,575,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,133,558 - 59,157,617 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,147,180 - 59,171,240 (-)NCBI
Celera1055,995,488 - 56,019,392 (-)NCBICelera
Cytogenetic Map10q24NCBI
Slc13a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,182,766 - 12,216,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,181,555 - 12,217,280 (-)NCBIChiLan1.0ChiLan1.0
SLC13A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,284,181 - 14,316,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,250,356 - 16,282,507 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,721,620 - 6,751,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,709,647 - 6,738,683 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,709,647 - 6,738,683 (-)Ensemblpanpan1.1panPan2
SLC13A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,655,167 - 30,677,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,655,760 - 30,674,653 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,787,440 - 30,809,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,756,555 - 30,778,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,757,037 - 30,775,827 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,722,875 - 30,744,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,681,431 - 30,703,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,854,574 - 30,876,850 (+)NCBIUU_Cfam_GSD_1.0
Slc13a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,584,091 - 54,612,585 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,288,456 - 1,318,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,288,637 - 1,316,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,680,444 - 50,705,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,679,900 - 50,710,985 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,678,025 - 52,707,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,060,445 - 6,089,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,350,210 - 15,379,004 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc13a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,322,188 - 7,357,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,321,622 - 7,357,270 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SLC13A5
698 total Variants

1 to 10 of 805 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_177550.5(SLC13A5):c.919C>G (p.Arg307Gly) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV001873826]|not provided [RCV001664955] Chr17:6695862 [GRCh38]
Chr17:6599181 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_177550.5(SLC13A5):c.1037G>T (p.Trp346Leu) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000544175]|Inborn genetic diseases [RCV002315020]|not provided [RCV001584339] Chr17:6695744 [GRCh38]
Chr17:6599063 [GRCh37]
Chr17:17p13.1
benign|likely benign|uncertain significance
NM_177550.5(SLC13A5):c.1366G>A (p.Val456Ile) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000524903]|Inborn genetic diseases [RCV002384247]|not provided [RCV001311104] Chr17:6690850 [GRCh38]
Chr17:6594169 [GRCh37]
Chr17:17p13.1
likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_177550.5(SLC13A5):c.1291G>A (p.Val431Met) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000551020]|Inborn genetic diseases [RCV002384246] Chr17:6690925 [GRCh38]
Chr17:6594244 [GRCh37]
Chr17:17p13.1
likely benign|uncertain significance
NM_177550.5(SLC13A5):c.4G>A (p.Ala2Thr) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000545598]|Inborn genetic diseases [RCV002341456] Chr17:6713330 [GRCh38]
Chr17:6616649 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_177550.5(SLC13A5):c.944C>A (p.Ala315Glu) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000542738] Chr17:6695837 [GRCh38]
Chr17:6599156 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_177550.5(SLC13A5):c.998G>A (p.Arg333Gln) single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV002060270]|not provided [RCV000520045] Chr17:6695783 [GRCh38]
Chr17:6599102 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_177550.5(SLC13A5):c.1056-4C>A single nucleotide variant Developmental and epileptic encephalopathy, 25 [RCV000558839] Chr17:6694201 [GRCh38]
Chr17:6597520 [GRCh37]
Chr17:17p13.1
likely benign
GRCh38/hg38 17p13.2-13.1(chr17:5732977-8038822)x1 copy number loss See cases [RCV000051043] Chr17:5732977..8038822 [GRCh38]
Chr17:5636297..7942140 [GRCh37]
Chr17:5577021..7882865 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:3601515-7178024)x1 copy number loss See cases [RCV000053406] Chr17:3601515..7178024 [GRCh38]
Chr17:3504809..7081343 [GRCh37]
Chr17:3451558..7022067 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
1 to 10 of 805 rows

Predicted Target Of
Summary Value
Count of predictions:4368
Count of miRNA genes:1104
Interacting mature miRNAs:1400
Transcripts:ENST00000293800, ENST00000381074, ENST00000433363, ENST00000570687, ENST00000572094, ENST00000572352, ENST00000572727, ENST00000573648, ENST00000574580, ENST00000574824, ENST00000575230, ENST00000576323
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596971413GWAS1090932_Hcitrate measurement QTL GWAS1090932 (human)3e-78citrate measurement1766920796692080Human
596972501GWAS1092020_Hcitrate measurement QTL GWAS1092020 (human)5e-18citrate measurement1766920796692080Human
407151492GWAS800468_Hcitrate measurement QTL GWAS800468 (human)3e-09citrate measurement1767100556710056Human
406986691GWAS635667_Hcitrate measurement QTL GWAS635667 (human)5e-18citrate measurement1766920796692080Human
407151493GWAS800469_Hcitrate measurement QTL GWAS800469 (human)1e-11citrate measurement1767013896701390Human
597218394GWAS1314468_Hcitrate measurement QTL GWAS1314468 (human)3e-09citrate measurement1767100556710056Human
597218395GWAS1314469_Hcitrate measurement QTL GWAS1314469 (human)1e-11citrate measurement1767013896701390Human
597283871GWAS1379945_Hcalcium measurement QTL GWAS1379945 (human)2e-12calcium measurementblood calcium level (CMO:0000502)1767115406711541Human
597581270GWAS1638130_Hcalcium measurement QTL GWAS1638130 (human)4e-14calcium measurementblood calcium level (CMO:0000502)1766866876686688Human
597224336GWAS1320410_Hcitrate measurement QTL GWAS1320410 (human)7e-09citrate measurement1767036996703700Human

1 to 10 of 33 rows
RH46267  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37176,613,993 - 6,614,121UniSTSGRCh37
Build 36176,554,717 - 6,554,845RGDNCBI36
Celera176,639,770 - 6,639,898RGD
Cytogenetic Map17p13.1UniSTS
HuRef176,509,524 - 6,509,652UniSTS
WI-18574  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37176,588,044 - 6,588,175UniSTSGRCh37
Build 36176,528,768 - 6,528,899RGDNCBI36
Celera176,613,824 - 6,613,955RGD
Cytogenetic Map17p13.1UniSTS
HuRef176,483,585 - 6,483,716UniSTS
GeneMap99-GB4 RH Map1753.8UniSTS
Whitehead-RH Map1776.8UniSTS
NCBI RH Map17105.4UniSTS
MARC_3679-3680:991937315:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37176,610,005 - 6,610,432UniSTSGRCh37
Build 36176,550,729 - 6,551,156RGDNCBI36
Celera176,635,782 - 6,636,209RGD
HuRef176,505,536 - 6,505,963UniSTS
D11S2921  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map10q24.33UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic MapXp11.4-p11.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map18pter-p11.3UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map4q34.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map7q21.12UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11p13-p12UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map5q12-q13UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map15q15-q21.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic MapXq25-q26.3UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map12p11.22UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map9p11UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map15q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q22-qterUniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map19p13.2-cenUniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map9q33UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic MapXq26.2UniSTS
Cytogenetic Map8q13.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map5p13.1-p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map6q14.3-q16.1UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map6q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map6q11.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map14q11.2-q21UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map5p14.3UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map9p13.1UniSTS
Cytogenetic Map9q34.13UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1168 2133 2390 1684 4926 1687 2207 4 623 1457 463 2199 5869 5258 51 3661 1 686 1686 1494 172 1


1 to 25 of 25 rows
RefSeq Transcripts NG_034220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC004706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ489980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY151833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA187094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H29568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 25 of 25 rows

Ensembl Acc Id: ENST00000293800   ⟹   ENSP00000293800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,684,723 - 6,713,369 (-)Ensembl
Ensembl Acc Id: ENST00000381074   ⟹   ENSP00000370464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,686,080 - 6,713,366 (-)Ensembl
Ensembl Acc Id: ENST00000433363   ⟹   ENSP00000406220
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,684,719 - 6,713,369 (-)Ensembl
Ensembl Acc Id: ENST00000570687   ⟹   ENSP00000460037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,687,354 - 6,690,884 (-)Ensembl
Ensembl Acc Id: ENST00000572094   ⟹   ENSP00000461495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,695,817 - 6,713,359 (-)Ensembl
Ensembl Acc Id: ENST00000572352   ⟹   ENSP00000461622
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,703,073 - 6,713,369 (-)Ensembl
Ensembl Acc Id: ENST00000572727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,689,962 - 6,695,889 (-)Ensembl
Ensembl Acc Id: ENST00000573648   ⟹   ENSP00000459372
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,686,097 - 6,713,377 (-)Ensembl
Ensembl Acc Id: ENST00000574580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,684,723 - 6,690,120 (-)Ensembl
Ensembl Acc Id: ENST00000574824
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,695,408 - 6,705,557 (-)Ensembl
Ensembl Acc Id: ENST00000575230   ⟹   ENSP00000460903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,704,036 - 6,713,369 (-)Ensembl
Ensembl Acc Id: ENST00000576323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,703,881 - 6,713,371 (-)Ensembl
RefSeq Acc Id: NM_001143838   ⟹   NP_001137310
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,684,719 - 6,713,369 (-)NCBI
GRCh37176,588,038 - 6,616,886 (-)NCBI
Celera176,613,818 - 6,642,517 (-)RGD
HuRef176,483,573 - 6,512,271 (-)NCBI
CHM1_1176,598,268 - 6,626,972 (-)NCBI
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284509   ⟹   NP_001271438
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,684,719 - 6,713,369 (-)NCBI
HuRef176,483,573 - 6,512,271 (-)NCBI
CHM1_1176,598,268 - 6,626,972 (-)NCBI
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284510   ⟹   NP_001271439
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,684,719 - 6,713,369 (-)NCBI
HuRef176,483,573 - 6,512,271 (-)NCBI
CHM1_1176,598,268 - 6,626,972 (-)NCBI
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBI
Sequence:
RefSeq Acc Id: NM_177550   ⟹   NP_808218
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,684,719 - 6,713,369 (-)NCBI
GRCh37176,588,038 - 6,616,886 (-)NCBI
Build 36176,528,762 - 6,557,388 (-)NCBI Archive
Celera176,613,818 - 6,642,517 (-)RGD
HuRef176,483,573 - 6,512,271 (-)NCBI
CHM1_1176,598,268 - 6,626,972 (-)NCBI
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011523795   ⟹   XP_011522097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,687,353 - 6,713,369 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054315795   ⟹   XP_054171770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0176,587,985 - 6,614,003 (-)NCBI
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: NP_808218   ⟸   NM_177550
- Peptide Label: isoform a
- UniProtKB: F8W7N2 (UniProtKB/Swiss-Prot),   B7ZLB4 (UniProtKB/Swiss-Prot),   B7Z4P2 (UniProtKB/Swiss-Prot),   B3KXR0 (UniProtKB/Swiss-Prot),   Q6ZMG1 (UniProtKB/Swiss-Prot),   Q86YT5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001137310   ⟸   NM_001143838
- Peptide Label: isoform b
- UniProtKB: Q86YT5 (UniProtKB/Swiss-Prot),   Q68D44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271439   ⟸   NM_001284510
- Peptide Label: isoform d
- UniProtKB: Q86YT5 (UniProtKB/Swiss-Prot),   Q68D44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271438   ⟸   NM_001284509
- Peptide Label: isoform c
- UniProtKB: Q86YT5 (UniProtKB/Swiss-Prot),   Q68D44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011522097   ⟸   XM_011523795
- Peptide Label: isoform X1
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q86YT5-F1-model_v2 AlphaFold Q86YT5 1-568 view protein structure

RGD ID:7233593
Promoter ID:EPDNEW_H22542
Type:initiation region
Name:SLC13A5_1
Description:solute carrier family 13 member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,713,369 - 6,713,429EPDNEW


1 to 39 of 39 rows
Database
Acc Id
Source(s)
COSMIC SLC13A5 COSMIC
Ensembl Genes ENSG00000141485 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000293800 ENTREZGENE
  ENST00000293800.10 UniProtKB/Swiss-Prot
  ENST00000381074 ENTREZGENE
  ENST00000381074.8 UniProtKB/Swiss-Prot
  ENST00000433363 ENTREZGENE
  ENST00000433363.7 UniProtKB/Swiss-Prot
  ENST00000573648 ENTREZGENE
  ENST00000573648.5 UniProtKB/Swiss-Prot
GTEx ENSG00000141485 GTEx
HGNC ID HGNC:23089 ENTREZGENE
Human Proteome Map SLC13A5 Human Proteome Map
InterPro Na/sul_symport_CS UniProtKB/Swiss-Prot
  SLC13A/DASS UniProtKB/Swiss-Prot
KEGG Report hsa:284111 UniProtKB/Swiss-Prot
NCBI Gene 284111 ENTREZGENE
OMIM 608305 OMIM
PANTHER SOLUTE CARRIER FAMILY 13 MEMBER UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 13 MEMBER 5 UniProtKB/Swiss-Prot
Pfam Na_sulph_symp UniProtKB/Swiss-Prot
PharmGKB PA134950956 PharmGKB
PROSITE NA_SULFATE UniProtKB/Swiss-Prot
UniProt B3KXR0 ENTREZGENE
  B7Z4P2 ENTREZGENE
  B7ZLB4 ENTREZGENE
  F8W7N2 ENTREZGENE
  I3L2Y7_HUMAN UniProtKB/TrEMBL
  I3L424_HUMAN UniProtKB/TrEMBL
  I3L4S9_HUMAN UniProtKB/TrEMBL
  I3L4X6_HUMAN UniProtKB/TrEMBL
  Q68D44 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZMG1 ENTREZGENE
  Q86YT5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3KXR0 UniProtKB/Swiss-Prot
  B7Z4P2 UniProtKB/Swiss-Prot
  B7ZLB4 UniProtKB/Swiss-Prot
  F8W7N2 UniProtKB/Swiss-Prot
  Q6ZMG1 UniProtKB/Swiss-Prot
1 to 39 of 39 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 SLC13A5  solute carrier family 13 member 5  SLC13A5  solute carrier family 13 (sodium-dependent citrate transporter), member 5  Symbol and/or name change 5135510 APPROVED