Slc13a5 (solute carrier family 13 (sodium-dependent citrate transporter), member 5) - Rat Genome Database

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Gene: Slc13a5 (solute carrier family 13 (sodium-dependent citrate transporter), member 5) Mus musculus
Analyze
Symbol: Slc13a5
Name: solute carrier family 13 (sodium-dependent citrate transporter), member 5
RGD ID: 1552454
MGI Page MGI
Description: Enables citrate transmembrane transporter activity; organic acid:sodium symporter activity; and succinate transmembrane transporter activity. Involved in carboxylic acid transport and cellular response to lithium ion. Acts upstream of or within anion transmembrane transport; tricarboxylic acid transmembrane transport; and tricarboxylic acid transport. Predicted to be located in basolateral plasma membrane; cytosol; and nucleoplasm. Predicted to be active in membrane. Is expressed in forelimb and humerus cartilage condensation. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 25. Orthologous to human SLC13A5 (solute carrier family 13 member 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: In; Indy; mIN; mINDY; Na; Na(+)/citrate cotransporter; NaC2/; NaC2/NaCT; Nact; novel solute carrier family 13 (sodium-dependent dicarboxylate transporter) (Slc13a2 or 3) member; sodium-coupled citrate transporter; sodium-dependent citrate transporter; solute carrier family 13 member 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,132,816 - 72,158,092 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,132,815 - 72,158,048 (-)EnsemblGRCm39 Ensembl
GRCm381172,241,990 - 72,267,295 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,241,989 - 72,267,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,055,496 - 72,080,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,059,700 - 72,082,760 (-)NCBIMGSCv36mm8
Celera1179,768,466 - 79,774,318 (-)NCBICelera
Cytogenetic Map11B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-hydroxybutyric acid  (ISO)
3-methylcholanthrene  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetoacetic acid  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
citric acid  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fonofos  (ISO)
glafenine  (ISO)
glycidol  (ISO)
GW 4064  (EXP)
methapyrilene  (ISO)
N-nitrosodiethylamine  (ISO)
obeticholic acid  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentanal  (ISO)
phenobarbital  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
riddelliine  (ISO)
rifampicin  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (ISO)
sorafenib  (ISO)
streptozocin  (EXP)
terbufos  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP,ISO)
triclosan  (ISO)
tunicamycin  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:14656221   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16516867   PMID:16829211   PMID:21803289   PMID:21873635  
PMID:26324167   PMID:28406943   PMID:30228991   PMID:31202927   PMID:31465442   PMID:32682952   PMID:32808644   PMID:33491666   PMID:33544126  


Genomics

Comparative Map Data
Slc13a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,132,816 - 72,158,092 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,132,815 - 72,158,048 (-)EnsemblGRCm39 Ensembl
GRCm381172,241,990 - 72,267,295 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,241,989 - 72,267,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,055,496 - 72,080,106 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,059,700 - 72,082,760 (-)NCBIMGSCv36mm8
Celera1179,768,466 - 79,774,318 (-)NCBICelera
Cytogenetic Map11B4NCBI
SLC13A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,684,719 - 6,713,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl176,684,719 - 6,713,377 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,588,038 - 6,616,688 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,528,762 - 6,557,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,528,764 - 6,557,388NCBI
Celera176,613,818 - 6,642,517 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,483,579 - 6,512,271 (-)NCBIHuRef
CHM1_1176,598,274 - 6,626,972 (-)NCBICHM1_1
T2T-CHM13v2.0176,585,350 - 6,614,003 (-)NCBIT2T-CHM13v2.0
Slc13a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21056,866,249 - 56,891,189 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,866,249 - 56,890,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,529,271 - 61,553,295 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01061,017,750 - 61,041,771 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01056,516,827 - 56,540,850 (-)NCBIRnor_WKY
Rnor_6.01058,806,581 - 58,835,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,810,058 - 58,834,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,550,465 - 58,575,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,133,558 - 59,157,617 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,147,180 - 59,171,240 (-)NCBI
Celera1055,995,488 - 56,019,392 (-)NCBICelera
Cytogenetic Map10q24NCBI
Slc13a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,182,766 - 12,216,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,181,555 - 12,217,280 (-)NCBIChiLan1.0ChiLan1.0
SLC13A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1176,709,647 - 6,738,683 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,709,647 - 6,738,683 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0176,721,620 - 6,751,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC13A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,655,167 - 30,677,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,655,760 - 30,674,653 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,787,440 - 30,809,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,756,555 - 30,778,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,757,037 - 30,775,827 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,722,875 - 30,744,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,681,431 - 30,703,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,854,574 - 30,876,850 (+)NCBIUU_Cfam_GSD_1.0
Slc13a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,584,091 - 54,612,585 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,288,456 - 1,318,221 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366771,288,637 - 1,316,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,680,444 - 50,705,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,679,900 - 50,710,985 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,678,025 - 52,707,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,060,445 - 6,089,867 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,350,210 - 15,379,004 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc13a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,322,188 - 7,357,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,321,622 - 7,357,270 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1097
Count of miRNA genes:570
Interacting mature miRNAs:722
Transcripts:ENSMUST00000021161, ENSMUST00000137701, ENSMUST00000140167
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse

Markers in Region
Slc13a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371172,055,621 - 72,055,696UniSTSGRCm37
Celera1179,768,591 - 79,768,666UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
Slc13a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
Slc13a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,242,119 - 72,242,194UniSTSGRCm38
MGSCv371172,055,621 - 72,055,696UniSTSGRCm37
Celera1179,768,591 - 79,768,666UniSTS
Cytogenetic Map11B4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK043499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW487858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY368893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH467389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000021161   ⟹   ENSMUSP00000021161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,132,815 - 72,157,485 (-)Ensembl
GRCm38.p6 Ensembl1172,241,989 - 72,266,659 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137701   ⟹   ENSMUSP00000119417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,134,214 - 72,157,439 (-)Ensembl
GRCm38.p6 Ensembl1172,243,388 - 72,266,613 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140167   ⟹   ENSMUSP00000119822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,149,893 - 72,157,428 (-)Ensembl
GRCm38.p6 Ensembl1172,259,067 - 72,266,602 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207990
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,150,917 - 72,158,048 (-)Ensembl
GRCm38.p6 Ensembl1172,260,091 - 72,267,222 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208056   ⟹   ENSMUSP00000146922
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,132,916 - 72,157,419 (-)Ensembl
GRCm38.p6 Ensembl1172,242,090 - 72,266,593 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208912   ⟹   ENSMUSP00000146762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,134,198 - 72,157,419 (-)Ensembl
GRCm38.p6 Ensembl1172,243,372 - 72,266,593 (-)Ensembl
RefSeq Acc Id: NM_001004148   ⟹   NP_001004148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,820 - 72,157,430 (-)NCBI
GRCm381172,241,994 - 72,266,604 (-)NCBI
MGSCv371172,055,496 - 72,080,106 (-)RGD
Celera1179,768,466 - 79,774,309 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372402   ⟹   NP_001359331
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,820 - 72,157,987 (-)NCBI
GRCm381172,241,994 - 72,267,161 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372403   ⟹   NP_001359332
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,820 - 72,157,430 (-)NCBI
GRCm381172,241,994 - 72,266,604 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314526   ⟹   XP_017170015
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,816 - 72,158,089 (-)NCBI
GRCm381172,241,990 - 72,267,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314527   ⟹   XP_017170016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,816 - 72,158,087 (-)NCBI
GRCm381172,241,990 - 72,267,295 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314528   ⟹   XP_017170017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,816 - 72,152,935 (-)NCBI
GRCm381172,241,990 - 72,262,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156658   ⟹   XP_036012551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,132,816 - 72,158,092 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001004148   ⟸   NM_001004148
- Peptide Label: isoform 1
- UniProtKB: Q67BT3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170016   ⟸   XM_017314527
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017170015   ⟸   XM_017314526
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170017   ⟸   XM_017314528
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001359331   ⟸   NM_001372402
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001359332   ⟸   NM_001372403
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000146922   ⟸   ENSMUST00000208056
RefSeq Acc Id: ENSMUSP00000146762   ⟸   ENSMUST00000208912
RefSeq Acc Id: ENSMUSP00000119822   ⟸   ENSMUST00000140167
RefSeq Acc Id: ENSMUSP00000021161   ⟸   ENSMUST00000021161
RefSeq Acc Id: ENSMUSP00000119417   ⟸   ENSMUST00000137701
RefSeq Acc Id: XP_036012551   ⟸   XM_036156658
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q67BT3-F1-model_v2 AlphaFold Q67BT3 1-572 view protein structure

Promoters
RGD ID:8675426
Promoter ID:EPDNEW_M15744
Type:initiation region
Name:Slc13a5_1
Description:Mus musculus solute carrier family 13 (sodium-dependent citratetransporter), member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15745  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,266,604 - 72,266,664EPDNEW
RGD ID:8675428
Promoter ID:EPDNEW_M15745
Type:initiation region
Name:Slc13a5_2
Description:Mus musculus solute carrier family 13 (sodium-dependent citratetransporter), member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15744  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,267,155 - 72,267,215EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3037150 AgrOrtholog
Ensembl Genes ENSMUSG00000020805 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000021161 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000119417.3 UniProtKB/TrEMBL
  ENSMUSP00000119822.3 UniProtKB/TrEMBL
  ENSMUSP00000146762.2 UniProtKB/TrEMBL
  ENSMUSP00000146922.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021161 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000137701.3 UniProtKB/TrEMBL
  ENSMUST00000140167.3 UniProtKB/TrEMBL
  ENSMUST00000208056.2 UniProtKB/TrEMBL
  ENSMUST00000208912.2 UniProtKB/TrEMBL
InterPro Na/sul_symport_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLC13A/DASS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:237831 UniProtKB/Swiss-Prot
MGD MGI:3037150 ENTREZGENE
NCBI Gene 237831 ENTREZGENE
Pfam Na_sulph_symp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc13a5 PhenoGen
PROSITE NA_SULFATE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LIC4_MOUSE UniProtKB/TrEMBL
  A0A140LIR1_MOUSE UniProtKB/TrEMBL
  Q3V394_MOUSE UniProtKB/TrEMBL
  Q5NBV0_MOUSE UniProtKB/TrEMBL
  Q5NBV1_MOUSE UniProtKB/TrEMBL
  Q67BT3 ENTREZGENE, UniProtKB/Swiss-Prot