Symbol:
SLC13A5
Name:
solute carrier family 13 member 5
RGD ID:
14027075
Description:
ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); identical protein binding (ortholog); organic acid:sodium symporter activity (ortholog); INVOLVED IN citrate transport (ortholog); succinate transport (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN basolateral plasma membrane (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 50,680,444 - 50,705,261 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 50,679,900 - 50,710,985 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 52,678,025 - 52,707,929 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
SLC13A5 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 50,680,444 - 50,705,261 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 50,679,900 - 50,710,985 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 52,678,025 - 52,707,929 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SLC13A5 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 6,684,719 - 6,713,369 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 6,684,719 - 6,713,377 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 6,588,038 - 6,616,688 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 6,528,762 - 6,557,388 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 17 6,528,764 - 6,557,388 NCBI Celera 17 6,613,818 - 6,642,517 (-) NCBI Celera Cytogenetic Map 17 p13.1 NCBI HuRef 17 6,483,579 - 6,512,271 (-) NCBI HuRef CHM1_1 17 6,598,274 - 6,626,972 (-) NCBI CHM1_1 T2T-CHM13v2.0 17 6,585,350 - 6,614,003 (-) NCBI T2T-CHM13v2.0
Slc13a5 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 72,132,816 - 72,158,092 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 72,132,815 - 72,158,048 (-) Ensembl GRCm39 Ensembl GRCm38 11 72,241,990 - 72,267,295 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 72,241,989 - 72,267,222 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 72,055,496 - 72,080,106 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 72,059,700 - 72,082,760 (-) NCBI MGSCv36 mm8 Celera 11 79,768,466 - 79,774,318 (-) NCBI Celera Cytogenetic Map 11 B4 NCBI cM Map 11 43.95 NCBI
Slc13a5 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 57,364,806 - 57,389,500 (-) NCBI GRCr8 mRatBN7.2 10 56,866,249 - 56,891,189 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 56,866,249 - 56,890,945 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 61,529,271 - 61,553,295 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 61,017,750 - 61,041,771 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 56,516,827 - 56,540,850 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 58,806,581 - 58,835,549 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 58,810,058 - 58,834,538 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 58,550,465 - 58,575,859 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 59,133,558 - 59,157,617 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 10 59,147,180 - 59,171,240 (-) NCBI Celera 10 55,995,488 - 56,019,392 (-) NCBI Celera Cytogenetic Map 10 q24 NCBI
Slc13a5 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955467 12,182,766 - 12,216,842 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955467 12,181,555 - 12,217,280 (-) NCBI ChiLan1.0 ChiLan1.0
SLC13A5 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 14,284,181 - 14,316,305 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 16,250,356 - 16,282,507 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 6,721,620 - 6,751,840 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 6,709,647 - 6,738,683 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 6,709,647 - 6,738,683 (-) Ensembl panpan1.1 panPan2
SLC13A5 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 30,655,167 - 30,677,551 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 30,655,760 - 30,674,653 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 30,787,440 - 30,809,725 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 30,756,555 - 30,778,836 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 30,757,037 - 30,775,827 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 30,722,875 - 30,744,869 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 30,681,431 - 30,703,701 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 30,854,574 - 30,876,850 (+) NCBI UU_Cfam_GSD_1.0
Slc13a5 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 54,584,091 - 54,612,585 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936677 1,288,456 - 1,318,221 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936677 1,288,637 - 1,316,884 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SLC13A5
Slc13a5
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
10
4
23
3
2
5
14
12
23
3
6
3
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSSSCT00000019465 ⟹ ENSSSCP00000018948
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 12 50,680,444 - 50,705,261 (+) Ensembl
Ensembl Acc Id:
ENSSSCT00000044092 ⟹ ENSSSCP00000036747
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 12 50,680,444 - 50,693,205 (+) Ensembl
Ensembl Acc Id:
ENSSSCT00000094973 ⟹ ENSSSCP00000077932
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 12 50,680,444 - 50,705,261 (+) Ensembl
Ensembl Acc Id:
ENSSSCT00000097234 ⟹ ENSSSCP00000079199
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 12 50,680,480 - 50,705,261 (+) Ensembl
RefSeq Acc Id:
XM_013981236 ⟹ XP_013836690
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 12 50,679,903 - 50,710,985 (+) NCBI
Sequence:
GAGGGTGACAAGGAAAGCAGAGGTCCGGGGAGCCGAGAGCGCTGCGCACGGGGCGGGTCAGAGATCCCTCCGTGATGGGGGTGCGAGGAGCAGAAGTAACCAGGTTCCCTCCGCGATGGCCTCGGCAC
hide sequence
RefSeq Acc Id:
XM_021067712 ⟹ XP_020923371
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 12 50,679,929 - 50,710,985 (+) NCBI
Sequence:
GGGGAGCCGAGAGCGCTGCGCACGGGGCGGGTCAGAGATCCCTCCGTGATGGGGGTGCGAGGAG
hide sequence
RefSeq Acc Id:
XR_002337330
Type:
NON-CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 12 50,679,900 - 50,703,991 (+) NCBI
Sequence:
GCCGAGGGTGACAAGGAAAGCAGAGGTCCGGGGAGCCGAGAGCGCTGCGCACGGGGCGGGTCAG
hide sequence
RefSeq Acc Id:
XP_013836690 ⟸ XM_013981236
- UniProtKB:
A0A480PLP6 (UniProtKB/TrEMBL), A0A8D1MPR6 (UniProtKB/TrEMBL)
- Sequence:
MASALSYVSKFKSFVILFVTPILLLPLIILMPAKFVRCAYVITVMAVYWCTEVIPLAVTALMPALLFPLFKIMDSKQVCLQYMKDTNMLFLGGLIVAVAVEHWNLHKRIALRTLLWVGAKPAQLMLGF
hide sequence
RefSeq Acc Id:
XP_020923371 ⟸ XM_021067712
- UniProtKB:
A0A480PLP6 (UniProtKB/TrEMBL), A0A8D1MPR6 (UniProtKB/TrEMBL)
- Sequence:
MASALSYVSKFKSFVILFVTPILLLPLIILMPAKFVRCAYVITVMAVYWCTEVIPLAVTALMPA
hide sequence
Ensembl Acc Id:
ENSSSCP00000036747 ⟸ ENSSSCT00000044092
Ensembl Acc Id:
ENSSSCP00000018948 ⟸ ENSSSCT00000019465
Ensembl Acc Id:
ENSSSCP00000077932 ⟸ ENSSSCT00000094973
Ensembl Acc Id:
ENSSSCP00000079199 ⟸ ENSSSCT00000097234
