Slc13a5 (solute carrier family 13 member 5)

Gene: Slc13a5 (solute carrier family 13 member 5) Chinchilla lanigera

Analyze

Symbol:

Slc13a5

Name:

solute carrier family 13 member 5

RGD ID:

9029802

Description:

ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); identical protein binding (ortholog); organic acid:sodium symporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); cellular response to lithium ion (ortholog); citrate transport (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytosol (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

solute carrier family 13 (sodium-dependent citrate transporter), member 5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	12,182,766 - 12,216,842 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	12,181,555 - 12,217,280 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

common variable immunodeficiency (ISO)

congenital myasthenic syndrome 2A (ISO)

developmental and epileptic encephalopathy 25 (ISO)

Developmental Disabilities (ISO)

dyskeratosis congenita (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

Leber congenital amaurosis 4 (ISO)

microcephaly (ISO)

myoclonic-atonic epilepsy (ISO)

steatotic liver disease (ISO)

very long chain acyl-CoA dehydrogenase deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alpha-ketoglutarate transport (ISO)

cellular response to lithium ion (ISO)

citrate transport (ISO)

fumarate transport (ISO)

oxaloacetate transport (ISO)

succinate transport (ISO)

tricarboxylic acid transmembrane transport (ISO)

tricarboxylic acid transport (ISO)

Cellular Component

basolateral plasma membrane (ISO)

cytosol (ISO)

nucleoplasm (ISO)

plasma membrane (ISO)

Molecular Function

citrate transmembrane transporter activity (ISO)

identical protein binding (ISO)

organic acid:sodium symporter activity (ISO)

protein binding (ISO)

sodium:dicarboxylate symporter activity (ISO)

succinate transmembrane transporter activity (ISO)

tricarboxylic acid transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Slc13a5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	12,182,766 - 12,216,842 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	12,181,555 - 12,217,280 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC13A5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	6,684,719 - 6,713,369 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	6,684,719 - 6,713,377 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	6,588,038 - 6,616,688 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	6,528,762 - 6,557,388 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	6,528,764 - 6,557,388	NCBI
Celera	17	6,613,818 - 6,642,517 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	6,483,579 - 6,512,271 (-)	NCBI		HuRef
CHM1_1	17	6,598,274 - 6,626,972 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	6,585,350 - 6,614,003 (-)	NCBI		T2T-CHM13v2.0

Slc13a5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	72,132,816 - 72,158,092 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	72,132,815 - 72,158,048 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	72,241,990 - 72,267,295 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	72,241,989 - 72,267,222 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	72,055,496 - 72,080,106 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	72,059,700 - 72,082,760 (-)	NCBI		MGSCv36	mm8
Celera	11	79,768,466 - 79,774,318 (-)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	43.95	NCBI

Slc13a5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	57,364,806 - 57,389,500 (-)	NCBI		GRCr8
mRatBN7.2	10	56,866,249 - 56,891,189 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	56,866,249 - 56,890,945 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	61,529,271 - 61,553,295 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	61,017,750 - 61,041,771 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	56,516,827 - 56,540,850 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	58,806,581 - 58,835,549 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	58,810,058 - 58,834,538 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	58,550,465 - 58,575,859 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	59,133,558 - 59,157,617 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	59,147,180 - 59,171,240 (-)	NCBI
Celera	10	55,995,488 - 56,019,392 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

SLC13A5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	14,284,181 - 14,316,305 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,250,356 - 16,282,507 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	6,721,620 - 6,751,840 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	6,709,647 - 6,738,683 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	6,709,647 - 6,738,683 (-)	Ensembl	panpan1.1		panPan2

SLC13A5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	30,655,167 - 30,677,551 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	30,655,760 - 30,674,653 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	30,787,440 - 30,809,725 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	30,756,555 - 30,778,836 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	30,757,037 - 30,775,827 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	30,722,875 - 30,744,869 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	30,681,431 - 30,703,701 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	30,854,574 - 30,876,850 (+)	NCBI		UU_Cfam_GSD_1.0

Slc13a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	54,584,091 - 54,612,585 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936677	1,288,456 - 1,318,221 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936677	1,288,637 - 1,316,884 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC13A5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	50,680,444 - 50,705,261 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	50,679,900 - 50,710,985 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	52,678,025 - 52,707,929 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC13A5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,060,445 - 6,089,867 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	15,350,210 - 15,379,004 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc13a5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	7,322,188 - 7,357,220 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	7,321,622 - 7,357,270 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005399670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013522142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013522144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01051625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01196108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000013137 ⟹ ENSCLAP00000012987

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955467	12,182,766 - 12,216,842 (-)	Ensembl

RefSeq Acc Id:

XM_005399670 ⟹ XP_005399727

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	12,181,555 - 12,217,280 (-)	NCBI

Sequence:

show sequence

GAGAGGTTCGGGACATGGAACTGACACCCCCAGAGGCCGGTGGACACTTTCACCCGGGACGCTT
CCAGAGCTGGCGAGAGAGCAGTCTCGCTTCCGTGCCATGGCTTCGGCGCTGAGCTATGTCTCCA
AGTTCAAGTCCTTCGCGATCTTGTTCGTCAGCCCGCTCCTGCTGCTGCCACTCATCATTCTGAT
ACCCGCCAAGTTTGTCAGGTGTGCCTACGTCATCATCCTCATGGCCATTTACTGGTGCACAGAC
GTCATCCCGGTGGCCGTCACCTCCCTCATGCCTGTTTTGCTCTTCCCACTCTTTCAGATACTGG
ACTCCAAAGAGGTATGCGTGCAGTACATGAAGGACACCAACATGCTGTTCCTGGGCAGCCTCAT
TGTGGCGGTGGCTGTGGAGCGCTGGAACCTGCATAAGAGGATCGCGCTGCGCACGCTGCTCTGG
GTGGGAGCCAAGCCCGCACGGCTGATGCTGGGCTTCATGACGGTCACAGCCTTCCTGTCCATGT
GGATCAGCAACACGGCCACCACGGCCATGATGGTGCCCATTGTAGAGGCCGTGCTACAGCAGAT
GGAAGCCACAAACGCAGCCTCGGAGGCCAGCCTGGGGGCACTGGAGCTGGCGGACAAGGGCAAG
GCCGGACAGTTGTCGGAGAACCAAGTGGCTTTTGAGGACCCCATGAAGGAGAAGCAGGAGAACC
AGGACAGGAAGAACACGTGCAAGGCTATGAACCTGTGCGTGTGCTATGCAGCCAGCATCGGGGG
CACGGCCACCCTGACCGGGACGGGACCCAACGTGGTGCTCCTGGGCCAGATGAATGAACTGTTT
CCTGACAGTAAGGATCTGCTGAACTTTGCGTCTTGGTTTGGATTTGCCTTCCCCAACATGCTGA
TGATGCTGCTACTCTCCTGGCTGTGGCTCCAGTGCGTTTACATGAGATTCAATTTTAAGAAATC
CTGTGGTTGTGGGACACAGAGCAGGAATAAGGAGAAGGCCGCCTATGAGGTGCTGCAGGAGGAG
TACAGGAAACTGGGACCCTTGTCCTTCGCTGAGGTCAACGTGCTGGTCTGCTTCCTCCTGTTGA
TCGGCCTGTGGTTCTCCCGTGACCCCGGTTTCATGCCAGGCTGGGTGTCCATTGCCTGGACAGA
GGATAAGAAAATGTATGCCAGTGATGCCACTGTGGCCATCTTTGTGGCCATCTTGCTATTCATT
GTACCTTCACAGAAGCCCAAGTTCAACTTTTGCAGCCAGACTGAGGAAGAAATGAAAACTCCAT
TTTATCCCCCACCTCTGCTGGATTGGAAGGTGACCCAGGAAAAAGTGCCCTGGGGCATTGTGCT
GCTCCTAGGGGGTGGATTTGCCCTGGCTAAAGGATGTGAGGCCTCGGGGCTCTCAGAGTGGATG
GGGAAGCAGATGGAGCCCTTGAGCAGTGTGTCCCCTGCAGCCATTACCCTGATCTTATCCTTGC
TTATTGCTGTGTCCACTGAGTGCACAAGCAATGTGGCCACCACCACCCTGTTCTTGCCCATCTT
TGCCTCCATGTCTCGTTCCATCGGCCTCAATCCACTGTACGTCATGCTCCCCTGTACCCTGAGT
GCATCCTTTGCCTTCATGTTGCCTGTGGCCACCCCGCCTAATGCCATCGTGTTTGCCTACGGAC
ACCTCAAAGTTTCTGACATGGTGAAAACAGGACTAATGATGAATGTAATTGGAGTCTTGTGTGT
GTTTTTGTCTGTCAACACCTGGGGACGGGTCATATTTGACTTGGATCATTTCCCTGACTGGGCT
AACATGACACATATTAAGACTTAGGAAGAGCCACAAGACCATGCACACGGCCTGCACCCTCCTG
AGGACTCTGACCTTTCCAGTACACCTCGCACAGAGCTTTGGGGCTTGCACCCCAGAGTGACTCA
CTCATGTCCACACCCCACCAAGACTCAGCCAACGGGGGTCACTTCTTCCTTCAGGGCTAGAGTC
AGAGATGGTGACGGGCAGGCTCAGAAGTGACGAGATCCTCTCAAGAGGTGTGGGATCCATTTTC
CTGGGGACTGGGAGGCAGGAGAGGAACCAGAACACAGGCTCTTGTACCATGACGCCTTGGGCAG
GCCCCAGGCTTGCCAGTGCTGGGCTCTGGTTCTCACCTGCTTAGTCCCAGGCATCCACATGGGT
GTTAGAGCCCCAGGATGGAGGCTGAGGAAATAGCGTGGCAGTGCCTGTGTCTCTGGCTGCCTCA
GATCTGTCGTTCTGAAGGGGACTACTCAGACAGGACAGGACATCTTGTCTCGGGCAGCCGTCCA
CTGCTGGAGTGACCTTCTGGAGACTCTCTGATCCTGGTATGGCACCACCACGAAAGGATGAGCA
ATCTGAAGCGCCAACTTCACGGCGACACCTGCCTCCCTTCGTACAGCTCACTCTTGGCTGACCA
GCTCCCCTCTTTGAACTAACAATTTGGGCCCCTTCCCCAACTCTCCAGTTAGCCTCCTTCAATC
CCTAGATCCCTTTGTTGTCTGGGCCAGCAGCAGCTGAAATCCCAAGGCCCCCTTCTTTTCTCAC
AGGAAACTCAGTTTGGTTCTTTGGGGGAAATGCTTTTTCACCAGTTCCGTACAGCCAGGGCCAC
ACTCTGAGTATGGGCACTGTGGAGTCCCTAGGTCCTCCCTCACCTGTAGGTGCAGAGTGGATGC
AGTATTAATTTCCAGTGGCTGGACCACCTCAGAGTTTAGCTGTCTAGCTGGAGTTTGAGCTCTG
CTGGGAAATCTCCCCCACTGTGTTGACTGGCTGCTGTAGCCAGGCCTAGCAGCAACAGAGCATC
ATTGAGAACAAGCAGTGCTTGGTGGTCCCTAAACCATACTGCCTACCTGGTGGGTTAATCTACC
TGAACTTACAGGCAATAACTTCAGAGTGGCCATGGAAACTCTCGGAACCCCCTATGAGAATGAG
AGACATGACAGGCAACCACCTTCTTGTTGAATTTCTCTTCCTTCCTTTTCTTTCTTTCTTTTCT
TTGTCTTCTTTCTTTTTCT

hide sequence

RefSeq Acc Id:

XM_013522142 ⟹ XP_013377596

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	12,182,845 - 12,216,886 (-)	NCBI

Sequence:

show sequence

TAAATCAGCGGAGTCTCTCGTTGCCCCGCATTCTTGCCCGCTAGTCTCGCTTCCGTGCCATGGC
TTCGGCGCTGAGCTATGTCTCCAAGTTCAAGTCCTTCGCGATCTTGTTCGTCAGCCCGCTCCTG
CTGCTGCCACTCATCATTCTGATACCCGCCAAGTTTGTCAGGTGTGCCTACGTCATCATCCTCA
TGGCCATTTACTGGTGCACAGACGTCATCCCGGTGGCCGTCACCTCCCTCATGCCTGTTTTGCT
CTTCCCACTCTTTCAGATACTGGACTCCAAAGAGGTATGCGTGCAGTACATGAAGGACACCAAC
ATGCTGTTCCTGGGCAGCCTCATTGTGGCGGTGGCTGTGGAGCGCTGGAACCTGCATAAGAGGA
TCGCGCTGCGCACGCTGCTCTGGGTGGGAGCCAAGCCCGCACGGCTGATGCTGGGCTTCATGAC
GGTCACAGCCTTCCTGTCCATGTGGATCAGCAACACGGCCACCACGGCCATGATGGTGCCCATT
GTAGAGGCCGTGCTACAGCAGATGGAAGCCACAAACGCAGCCTCGGAGGCCAGCCTGGGGGCAC
TGGAGCTGGCGGACAAGGGCAAGGCCGGACAGTTGTCGGAGAACCAAGTGGCTTTTGAGGACCC
CATGAAGGAGAAGCAGGAGAACCAGGACAGGAAGAACACGTGCAAGGCTATGAACCTGTGCGTG
TGCTATGCAGCCAGCATCGGGGGCACGGCCACCCTGACCGGGACGGGACCCAACGTGGTGCTCC
TGGGCCAGATGAATGAACTGTTTCCTGACAGTAAGGATCTGCTGAACTTTGCGTCTTGGTTTGG
ATTTGCCTTCCCCAACATGCTGATGATGCTGCTACTCTCCTGGCTGTGGCTCCAGTGCGTTTAC
ATGAGATTCAATTTTAAGAAATCCTGTGGTTGTGGGACACAGAGCAGGAATAAGGAGAAGGCCG
CCTATGAGGTGCTGCAGGAGGAGTACAGGAAACTGGGACCCTTGTCCTTCGCTGAGGTCAACGT
GCTGGTCTGCTTCCTCCTGTTGATCGGCCTGTGGTTCTCCCGTGACCCCGGTTTCATGCCAGGC
TGGGTGTCCATTGCCTGGACAGAGGATAAGAAAATGTATGCCAGTGATGCCACTGTGGCCATCT
TTGTGGCCATCTTGCTATTCATTGTACCTTCACAGAAGCCCAAGTTCAACTTTTGCAGCCAGAC
TGAGGAAGAAATGAAAACTCCATTTTATCCCCCACCTCTGCTGGATTGGAAGGTGACCCAGGAA
AAAGTGCCCTGGGGCATTGTGCTGCTCCTAGGGGGTGGATTTGCCCTGGCTAAAGGATGTGAGG
CCTCGGGGCTCTCAGAGTGGATGGGGAAGCAGATGGAGCCCTTGAGCAGTGTGTCCCCTGCAGC
CATTACCCTGATCTTATCCTTGCTTATTGCTGTGTCCACTGAGTGCACAAGCAATGTGGCCACC
ACCACCCTGTTCTTGCCCATCTTTGCCTCCATGTCTCGTTCCATCGGCCTCAATCCACTGTACG
TCATGCTCCCCTGTACCCTGAGTGCATCCTTTGCCTTCATGTTGCCTGTGGCCACCCCGCCTAA
TGCCATCGTGTTTGCCTACGGACACCTCAAAGTTTCTGACATGGTAACACAACTGCTTTTATTT
ACTCCTCTCAGACTCTGATGCTATTGGTAGAAGGGATGCCCCATTTATGACTGATGTGTGAGCA
TCAAAAGAATGGCATGTGACTTGAGAATACCATGGATTGTCGGGAGCTATACCCGTAATTTGCA
TTTATAATGGAGCTCTTCTTCTTTTTTGAAATGATCTTAACCTTCACAGGCTGTCCTGTCTCCT
TAGTGGGAGTCAGAATCTCCCCCCTTTGAAGCTGTGCAGGCACCAGGGGAACCCCATGGTCAAG
GACGGGCTTCACGAACAAGAACCCTGAAGATGGTCAGGAGGGGTGAGGCTTAAGTTGAGAGGAA
ATGCTAATGACAGTTGAGATACTTGTAGAGGTGTCTGAAGAGGTAGGCACATGAAGGGAAAGAG
ACCACTGTTGAGAGCAGATAAGGTAAGAGACAAATAGAGTCCCAGAAAGAACCTCCATGACAGG
TTTGGCTTTATTGCCTCTAATAGAAGAAAGACATCTTTGCAGCTCTGGGTCAGGGACAAAGAAA
GTACATAAGCCAGAGAAGCTGGAAATAAAGGTCTTACCTTAGACCAACCAGTTGTTAATTATCA
CAGATACTCTGCTGAGTATCTCTGAGACGCCATGAAACATTTTCACAAAGAGGCCAGATGCCAG
TCCCCAGTAAAAAACTTTACAATGAGGTATTCAAGTAGTGGTTATTTGCACTAAGAAAGAATGC
AGAATGGGCATCAGAAAGAACCAGAAGGGAGTCACAAGGATGCCACAACATCTTTGTGGGACAC
TAACGTCACAAGGGTAAGCACTGGATCTAGAGTCACACCCCCAAGCTCCTCCATGATTTGCCGG
AGTAGATAATGCCCCATGTCACCCCCCTGAGGTCATTTTCCAGTACTAAAATGGGCACGGAGAA
CCTCTGTCCCACCTCCCTCCCACGGGTGCTCTGAGCACCAATGACAACAGACATGAGGTTGCCT
TGTCCGGGAGTAGGGAAATCCCAGAGCGTGGCACAGGGACATCGAAGCCCCATGTACCGGCCCT
TTATCCATCTCGCCAAGTGTCCCATTTGCCTTTGTTCTGAAAAAGTGGCATACCCTGGGGTGCT
GACTCTGACCCTGTTTGTTTGTTTATTTATTTATTTTTATTTTCCAGGTGAAAACAGGACTAAT
GATGAATGTAATTGGAGTCTTGTGTGTGTTTTTGTC

hide sequence

RefSeq Acc Id:

XM_013522144 ⟹ XP_013377598

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955467	12,181,555 - 12,217,258 (-)	NCBI

Sequence:

show sequence

GACACCCCCAGAGGCCGGTGGACACTTTCACCCGGGACGCTTCCAGAGCTGGCGAGAGAGCAGT
TTGTCAGGTGTGCCTACGTCATCATCCTCATGGCCATTTACTGGTGCACAGACGTCATCCCGGT
GGCCGTCACCTCCCTCATGCCTGTTTTGCTCTTCCCACTCTTTCAGATACTGGACTCCAAAGAG
GTATGCGTGCAGTACATGAAGGACACCAACATGCTGTTCCTGGGCAGCCTCATTGTGGCGGTGG
CTGTGGAGCGCTGGAACCTGCATAAGAGGATCGCGCTGCGCACGCTGCTCTGGGTGGGAGCCAA
GCCCGCACGGCTGATGCTGGGCTTCATGACGGTCACAGCCTTCCTGTCCATGTGGATCAGCAAC
ACGGCCACCACGGCCATGATGGTGCCCATTGTAGAGGCCGTGCTACAGCAGATGGAAGCCACAA
ACGCAGCCTCGGAGGCCAGCCTGGGGGCACTGGAGCTGGCGGACAAGGGCAAGGCCGGACAGTT
GTCGGAGAACCAAGTGGCTTTTGAGGACCCCATGAAGGAGAAGCAGGAGAACCAGGACAGGAAG
AACACGTGCAAGGCTATGAACCTGTGCGTGTGCTATGCAGCCAGCATCGGGGGCACGGCCACCC
TGACCGGGACGGGACCCAACGTGGTGCTCCTGGGCCAGATGAATGAACTGTTTCCTGACAGTAA
GGATCTGCTGAACTTTGCGTCTTGGTTTGGATTTGCCTTCCCCAACATGCTGATGATGCTGCTA
CTCTCCTGGCTGTGGCTCCAGTGCGTTTACATGAGATTCAATTTTAAGAAATCCTGTGGTTGTG
GGACACAGAGCAGGAATAAGGAGAAGGCCGCCTATGAGGTGCTGCAGGAGGAGTACAGGAAACT
GGGACCCTTGTCCTTCGCTGAGGTCAACGTGCTGGTCTGCTTCCTCCTGTTGATCGGCCTGTGG
TTCTCCCGTGACCCCGGTTTCATGCCAGGCTGGGTGTCCATTGCCTGGACAGAGGATAAGAAAA
TGTATGCCAGTGATGCCACTGTGGCCATCTTTGTGGCCATCTTGCTATTCATTGTACCTTCACA
GAAGCCCAAGTTCAACTTTTGCAGCCAGACTGAGGAAGAAATGAAAACTCCATTTTATCCCCCA
CCTCTGCTGGATTGGAAGGTGACCCAGGAAAAAGTGCCCTGGGGCATTGTGCTGCTCCTAGGGG
GTGGATTTGCCCTGGCTAAAGGATGTGAGGCCTCGGGGCTCTCAGAGTGGATGGGGAAGCAGAT
GGAGCCCTTGAGCAGTGTGTCCCCTGCAGCCATTACCCTGATCTTATCCTTGCTTATTGCTGTG
TCCACTGAGTGCACAAGCAATGTGGCCACCACCACCCTGTTCTTGCCCATCTTTGCCTCCATGT
CTCGTTCCATCGGCCTCAATCCACTGTACGTCATGCTCCCCTGTACCCTGAGTGCATCCTTTGC
CTTCATGTTGCCTGTGGCCACCCCGCCTAATGCCATCGTGTTTGCCTACGGACACCTCAAAGTT
TCTGACATGGTGAAAACAGGACTAATGATGAATGTAATTGGAGTCTTGTGTGTGTTTTTGTCTG
TCAACACCTGGGGACGGGTCATATTTGACTTGGATCATTTCCCTGACTGGGCTAACATGACACA
TATTAAGACTTAGGAAGAGCCACAAGACCATGCACACGGCCTGCACCCTCCTGAGGACTCTGAC
CTTTCCAGTACACCTCGCACAGAGCTTTGGGGCTTGCACCCCAGAGTGACTCACTCATGTCCAC
ACCCCACCAAGACTCAGCCAACGGGGGTCACTTCTTCCTTCAGGGCTAGAGTCAGAGATGGTGA
CGGGCAGGCTCAGAAGTGACGAGATCCTCTCAAGAGGTGTGGGATCCATTTTCCTGGGGACTGG
GAGGCAGGAGAGGAACCAGAACACAGGCTCTTGTACCATGACGCCTTGGGCAGGCCCCAGGCTT
GCCAGTGCTGGGCTCTGGTTCTCACCTGCTTAGTCCCAGGCATCCACATGGGTGTTAGAGCCCC
AGGATGGAGGCTGAGGAAATAGCGTGGCAGTGCCTGTGTCTCTGGCTGCCTCAGATCTGTCGTT
CTGAAGGGGACTACTCAGACAGGACAGGACATCTTGTCTCGGGCAGCCGTCCACTGCTGGAGTG
ACCTTCTGGAGACTCTCTGATCCTGGTATGGCACCACCACGAAAGGATGAGCAATCTGAAGCGC
CAACTTCACGGCGACACCTGCCTCCCTTCGTACAGCTCACTCTTGGCTGACCAGCTCCCCTCTT
TGAACTAACAATTTGGGCCCCTTCCCCAACTCTCCAGTTAGCCTCCTTCAATCCCTAGATCCCT
TTGTTGTCTGGGCCAGCAGCAGCTGAAATCCCAAGGCCCCCTTCTTTTCTCACAGGAAACTCAG
TTTGGTTCTTTGGGGGAAATGCTTTTTCACCAGTTCCGTACAGCCAGGGCCACACTCTGAGTAT
GGGCACTGTGGAGTCCCTAGGTCCTCCCTCACCTGTAGGTGCAGAGTGGATGCAGTATTAATTT
CCAGTGGCTGGACCACCTCAGAGTTTAGCTGTCTAGCTGGAGTTTGAGCTCTGCTGGGAAATCT
CCCCCACTGTGTTGACTGGCTGCTGTAGCCAGGCCTAGCAGCAACAGAGCATCATTGAGAACAA
GCAGTGCTTGGTGGTCCCTAAACCATACTGCCTACCTGGTGGGTTAATCTACCTGAACTTACAG
GCAATAACTTCAGAGTGGCCATGGAAACTCTCGGAACCCCCTATGAGAATGAGAGACATGACAG
GCAACCACCTTCTTGTTGAATTTCTCTTCCTTCCTTTTCTTTCTTTCTTTTCTTTGTCTTCTTT
CTTTTTCT

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Protein Sequences


Protein RefSeqs	XP_005399727	(Get FASTA)	NCBI Sequence Viewer
	XP_013377596	(Get FASTA)	NCBI Sequence Viewer
	XP_013377598	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000012987
	ENSCLAP00000012987.1

RefSeq Acc Id:	XP_005399727 ⟸ XM_005399670
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VBP6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASALSYVSKFKSFAILFVSPLLLLPLIILIPAKFVRCAYVIILMAIYWCTDVIPVAVTSLMPV LLFPLFQILDSKEVCVQYMKDTNMLFLGSLIVAVAVERWNLHKRIALRTLLWVGAKPARLMLGF MTVTAFLSMWISNTATTAMMVPIVEAVLQQMEATNAASEASLGALELADKGKAGQLSENQVAFE DPMKEKQENQDRKNTCKAMNLCVCYAASIGGTATLTGTGPNVVLLGQMNELFPDSKDLLNFASW FGFAFPNMLMMLLLSWLWLQCVYMRFNFKKSCGCGTQSRNKEKAAYEVLQEEYRKLGPLSFAEV NVLVCFLLLIGLWFSRDPGFMPGWVSIAWTEDKKMYASDATVAIFVAILLFIVPSQKPKFNFCS QTEEEMKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGCEASGLSEWMGKQMEPLSSVSP AAITLILSLLIAVSTECTSNVATTTLFLPIFASMSRSIGLNPLYVMLPCTLSASFAFMLPVATP PNAIVFAYGHLKVSDMVKTGLMMNVIGVLCVFLSVNTWGRVIFDLDHFPDWANMTHIKT hide sequence

RefSeq Acc Id:

XP_013377598 ⟸ XM_013522144

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAIYWCTDVIPVAVTSLMPVLLFPLFQILDSKEVCVQYMKDTNMLFLGSLIVAVAVERWNLHKR
IALRTLLWVGAKPARLMLGFMTVTAFLSMWISNTATTAMMVPIVEAVLQQMEATNAASEASLGA
LELADKGKAGQLSENQVAFEDPMKEKQENQDRKNTCKAMNLCVCYAASIGGTATLTGTGPNVVL
LGQMNELFPDSKDLLNFASWFGFAFPNMLMMLLLSWLWLQCVYMRFNFKKSCGCGTQSRNKEKA
AYEVLQEEYRKLGPLSFAEVNVLVCFLLLIGLWFSRDPGFMPGWVSIAWTEDKKMYASDATVAI
FVAILLFIVPSQKPKFNFCSQTEEEMKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGCE
ASGLSEWMGKQMEPLSSVSPAAITLILSLLIAVSTECTSNVATTTLFLPIFASMSRSIGLNPLY
VMLPCTLSASFAFMLPVATPPNAIVFAYGHLKVSDMVKTGLMMNVIGVLCVFLSVNTWGRVIFD
LDHFPDWANMTHIKT

hide sequence

RefSeq Acc Id:

XP_013377596 ⟸ XM_013522142

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASALSYVSKFKSFAILFVSPLLLLPLIILIPAKFVRCAYVIILMAIYWCTDVIPVAVTSLMPV
LLFPLFQILDSKEVCVQYMKDTNMLFLGSLIVAVAVERWNLHKRIALRTLLWVGAKPARLMLGF
MTVTAFLSMWISNTATTAMMVPIVEAVLQQMEATNAASEASLGALELADKGKAGQLSENQVAFE
DPMKEKQENQDRKNTCKAMNLCVCYAASIGGTATLTGTGPNVVLLGQMNELFPDSKDLLNFASW
FGFAFPNMLMMLLLSWLWLQCVYMRFNFKKSCGCGTQSRNKEKAAYEVLQEEYRKLGPLSFAEV
NVLVCFLLLIGLWFSRDPGFMPGWVSIAWTEDKKMYASDATVAIFVAILLFIVPSQKPKFNFCS
QTEEEMKTPFYPPPLLDWKVTQEKVPWGIVLLLGGGFALAKGCEASGLSEWMGKQMEPLSSVSP
AAITLILSLLIAVSTECTSNVATTTLFLPIFASMSRSIGLNPLYVMLPCTLSASFAFMLPVATP
PNAIVFAYGHLKVSDMVTQLLLFTPLRL

hide sequence

RefSeq Acc Id:

ENSCLAP00000012987 ⟸ ENSCLAT00000013137

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008962	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013137	ENTREZGENE
	ENSCLAT00000013137.1	UniProtKB/TrEMBL
InterPro	Na/sul_symport_CS	UniProtKB/TrEMBL
	SLC13A/DASS	UniProtKB/TrEMBL
NCBI Gene	Slc13a5	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 13 MEMBER	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 13 MEMBER 5	UniProtKB/TrEMBL
Pfam	Na_sulph_symp	UniProtKB/TrEMBL
PROSITE	NA_SULFATE	UniProtKB/TrEMBL
UniProt	A0A8C2VBP6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Slc13a5	solute carrier family 13 member 5		solute carrier family 13 (sodium-dependent citrate transporter), member 5	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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