GWAS1090932_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1090932_H (citrate measurement QTL GWAS1090932 (human)) Homo sapiens

Symbol: GWAS1090932_H
Name: citrate measurement QTL GWAS1090932 (human)
RGD ID: 596971413
Trait: citrate measurement
LOD Score: Not Available
P Value: 3.0E-78
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38176,692,079 - 6,692,080RGD_MAPPER_PIPELINEGRCh38
GRCh37176,595,398 - 6,595,399RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1351292SLC13A5solute carrier family 13 member 51766847196713369Human


Peak: (rs172642)
Human AssemblyChrPosition (strand)Source
GRCh38176,692,079 - 6,692,080RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596971413GWAS1090932_Hcitrate measurement QTL GWAS1090932 (human)3e-78citrate measurement1766920796692080Human
596972501GWAS1092020_Hcitrate measurement QTL GWAS1092020 (human)5e-18citrate measurement1766920796692080Human
406986691GWAS635667_Hcitrate measurement QTL GWAS635667 (human)5e-18citrate measurement1766920796692080Human
597287610GWAS1383684_Hcitrate measurement QTL GWAS1383684 (human)3e-78citrate measurement1766920796692080Human
407060309GWAS709285_Hcitrate measurement QTL GWAS709285 (human)3e-78citrate measurement1766920796692080Human
597263653GWAS1359727_Hcitrate measurement QTL GWAS1359727 (human)5e-18citrate measurement1766920796692080Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1359727_H GCST90132705 Citrate levels 24,770 European ancestry individuals C 0.48 5E-18 17.302 rs172642 0.08 citrate measurement (EFO:0010114)
 PMID:27005778
GWAS1383684_H GCST90301949 Citrate levels 11,340 South Asian ancestry individuals, 72,076 European ancestry individuals A 0.4908 3E-78 77.523 rs172642 0.0918 citrate measurement (EFO:0010114)
 PMID:38448586
Database
Acc Id
Source(s)
GWAS Catalog GCST90301949 GWAS Catalog

Note Type Note Reference