GJA3 (gap junction protein alpha 3) - Rat Genome Database

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Gene: GJA3 (gap junction protein alpha 3) Homo sapiens
Analyze
Symbol: GJA3
Name: gap junction protein alpha 3
RGD ID: 1349664
HGNC Page HGNC:4277
Description: Enables gap junction hemi-channel activity. Involved in gap junction-mediated intercellular transport. Located in plasma membrane. Part of connexin complex. Implicated in cataract 14 multiple types.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cataract, zonular pulverulent 2; connexin 46; connexin-46; CTRCT14; CX46; CZP2; CZP3; gap junction alpha 3; gap junction alpha-3 protein; gap junction protein, alpha 3, 46kDa; gap junction protein, alpha 3, 46kda (connexin 46)
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,138,255 - 20,161,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1320,138,255 - 20,161,052 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,712,394 - 20,735,191 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,610,394 - 19,633,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,614,119 - 19,615,427NCBI
Celera131,774,203 - 1,796,991 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,517,843 - 1,540,632 (-)NCBIHuRef
CHM1_11320,680,889 - 20,703,688 (-)NCBICHM1_1
T2T-CHM13v2.01319,334,689 - 19,357,997 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
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Qualifier
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Reference
Notes
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Original Reference(s)
GJA3Humancataract  ISOGja3 (Rattus norvegicus)1599824DNA:missense mutationRGD 
GJA3HumanCataract, Autosomal Dominant Nuclear  IAGP 1578473DNA:missense mutation:cds:p.N188T (human)RGD 
1 to 20 of 76 rows
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Original Reference(s)
GJA3Humanautosomal dominant nonsyndromic deafness 3B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 3bClinVarPMID:28492532
GJA3Humanautosomal recessive nonsyndromic deafness 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:28492532
GJA3Humanautosomal recessive nonsyndromic deafness 1B  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1bClinVarPMID:28492532
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:17615540 more ...
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:21031021 more ...
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:25741868 and PMID:36161833
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:15208569 more ...
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:25741868 and PMID:28839118
GJA3Humancataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:16885921 more ...
GJA3Humancataract 1 multiple types  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Zonular Pulverulent CataractClinVar 
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:25741868
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:22876138 more ...
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Zonular pulverulent cataract 3ClinVarPMID:17615540 more ...
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:25741868 and PMID:34014271
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:25741868 more ...
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:16885921 more ...
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVar 
GJA3Humancataract 14 multiple types  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 14 multiple typesClinVarPMID:21552498 more ...
1 to 20 of 76 rows
Object Symbol
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Original Reference(s)
GJA3Humancataract 14 multiple types  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
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Original Reference(s)
GJA3Humancataract 14 multiple types  ISSGja3 (Mus musculus)13592920OMIM:601885MouseDO 
Object Symbol
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Original Reference(s)
GJA3Humancataract 14 multiple types  IAGP 7240710 OMIM 

1 to 20 of 62 rows

  
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Original Reference(s)
GJA3Human1,2-dimethylhydrazine decreases expressionISOGja3 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of GJA3 mRNACTDPMID:22206623
GJA3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOGja3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of GJA3 mRNACTDPMID:21570461
GJA3Human3,4-methylenedioxymethamphetamine decreases expressionISOGja3 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of GJA3 mRNACTDPMID:26251327
GJA3Human4,4'-sulfonyldiphenol increases methylationISOGja3 (Mus musculus)6480464bisphenol S results in increased methylation of GJA3 promoterCTDPMID:33297965
GJA3Human6-propyl-2-thiouracil decreases expressionISOGja3 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of GJA3 mRNACTDPMID:24780913
GJA3Humanacrylamide decreases expressionISOGja3 (Rattus norvegicus)6480464Acrylamide results in decreased expression of GJA3 mRNACTDPMID:28959563
GJA3Humanactinomycin D multiple interactionsEXP 6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of GJA3 mRNACTDPMID:38460933
GJA3Humanaflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of GJA3 mRNACTDPMID:32234424
GJA3Humanammonium chloride affects expressionISOGja3 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of GJA3 mRNACTDPMID:16483693
GJA3Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of GJA3 promoterCTDPMID:27901495
GJA3Humanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of GJA3 mRNACTDPMID:32234424
GJA3Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of GJA3 5' UTRCTDPMID:27901495
GJA3Humanbis(2-chloroethyl) sulfide increases expressionISOGja3 (Mus musculus)6480464Mustard Gas results in increased expression of GJA3 mRNACTDPMID:15674843
GJA3Humanbisphenol A increases methylationEXP 6480464bisphenol A results in increased methylation of GJA3 geneCTDPMID:22576693
GJA3Humanbisphenol A decreases expressionISOGja3 (Rattus norvegicus)6480464bisphenol A results in decreased expression of GJA3 mRNACTDPMID:25181051 and PMID:30816183
GJA3Humanbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of GJA3 mRNACTDPMID:22576693
GJA3Humanbutanal increases expressionEXP 6480464butyraldehyde results in increased expression of GJA3 mRNACTDPMID:26079696
GJA3Humancholine multiple interactionsISOGja3 (Mus musculus)6480464[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of GJA3 geneCTDPMID:20938992
GJA3Humancisplatin increases expressionEXP 6480464Cisplatin results in increased expression of GJA3 mRNACTDPMID:27392435
GJA3Humancisplatin multiple interactionsEXP 6480464[Cisplatin co-treated with jinfukang] results in increased expression of GJA3 mRNACTDPMID:27392435

1 to 20 of 62 rows

Biological Process

  
Object Symbol
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Original Reference(s)
GJA3Humancell communication involved_inIEAInterPro:IPR000500 more ...150520179 InterProGO_REF:0000002
GJA3Humancell-cell signaling involved_inIBAMGI:1334209 more ...150520179 GO_CentralGO_REF:0000033
GJA3Humangap junction-mediated intercellular transport involved_inIDA 150520179 PMID:30044662UniProtPMID:30044662
GJA3Humanresponse to hydrogen peroxide  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:15467523 and REF_RGD_ID:1599825
GJA3Humanresponse to pH  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:11889584 and REF_RGD_ID:1599826
GJA3Humantransmembrane transport involved_inIEAGO:0005243 and GO:0055077150520179 GOCGO_REF:0000108
GJA3Humanvisual perception involved_inIEAInterPro:IPR002262150520179 InterProGO_REF:0000002

Cellular Component
1 to 15 of 15 rows

  
Object Symbol
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Original Reference(s)
GJA3Humananchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
GJA3Humanconnexin complex part_ofIDA 150520179 PMID:30044662UniProtPMID:30044662
GJA3Humanconnexin complex part_ofIBAMGI:2384150 more ...150520179 GO_CentralGO_REF:0000033
GJA3Humanconnexin complex part_ofIEAInterPro:IPR000500 and InterPro:IPR017990150520179 InterProGO_REF:0000002
GJA3Humangap junction  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:1659572 and REF_RGD_ID:728416
GJA3Humangap junction located_inIEAARBA:ARBA00028360150520179 UniProtGO_REF:0000117
GJA3Humangap junction located_inIEAUniProtKB:Q64448 and ensembl:ENSMUSP00000059587150520179 EnsemblGO_REF:0000107
GJA3Humangap junction located_inIEAUniProtKB-SubCell:SL-0124150520179 UniProtGO_REF:0000044
GJA3Humangap junction located_inIEAInterPro:IPR002262150520179 InterProGO_REF:0000002
GJA3Humangap junction located_inIEAUniProtKB-KW:KW-0303150520179 UniProtGO_REF:0000043
GJA3Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GJA3Humanplasma membrane located_inIEAUniProtKB:Q64448 and ensembl:ENSMUSP00000059587150520179 EnsemblGO_REF:0000107
GJA3Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
GJA3Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
GJA3Humanplasma membrane located_inIDA 150520179 PMID:30044662UniProtPMID:30044662
1 to 15 of 15 rows

Molecular Function

  

Object Symbol
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Term
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Reference
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Source
Original Reference(s)
GJA3HumanAbnormal lens morphology  IAGP 1578473DNA:missense mutation:cds:p.N188T RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:601885
GJA3HumanZonular cataract  IAGP 8699517 HPOMIM:601885
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:16885921 more ...
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:21031021 more ...
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:25741868 and PMID:36161833
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:25741868 and PMID:28839118
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:17615540 more ...
GJA3HumanDevelopmental cataract  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental cataractClinVarPMID:15208569 more ...
GJA3HumanHidrotic ectodermal dysplasia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hidrotic ectodermal dysplasiaClinVarPMID:28492532

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. A novel connexin46 (GJA3) mutation in autosomal dominant congenital nuclear pulverulent cataract. Li Y, etal., Mol Vis. 2004 Sep 14;10:668-71.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
7. New genetic model rat for congenital cataracts due to a connexin 46 (Gja3 ) mutation. Yoshida M, etal., Pathol Int. 2005 Nov;55(11):732-7.
PMID:1849321   PMID:1964417   PMID:7342922   PMID:9199569   PMID:9413992   PMID:9664032   PMID:10205266   PMID:10746562   PMID:11739633   PMID:11980479   PMID:12477932   PMID:12808044  
PMID:14627959   PMID:15057823   PMID:15208569   PMID:15286166   PMID:15467523   PMID:15489334   PMID:16254549   PMID:16885921   PMID:16971895   PMID:17492548   PMID:17615540   PMID:17893674  
PMID:20013805   PMID:20431721   PMID:21031021   PMID:21386927   PMID:21552498   PMID:21606502   PMID:21647269   PMID:21681855   PMID:21873635   PMID:21897748   PMID:22312188   PMID:22550389  
PMID:22825713   PMID:22843197   PMID:22864933   PMID:22876138   PMID:23302783   PMID:23374644   PMID:23592915   PMID:24019978   PMID:24319337   PMID:24728566   PMID:24772942   PMID:25549162  
PMID:25635993   PMID:25959821   PMID:25963833   PMID:26018820   PMID:26449341   PMID:26683566   PMID:27143357   PMID:27609163   PMID:27789753   PMID:28088522   PMID:28877251   PMID:29298900  
PMID:29934635   PMID:30044662   PMID:30542154   PMID:31034164   PMID:31618082   PMID:32272685   PMID:32353936   PMID:32393512   PMID:32808810   PMID:32971763   PMID:33140904   PMID:33961781  
PMID:34226295   PMID:34830485   PMID:36629882   PMID:37589989   PMID:37892142   PMID:38178039  



GJA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,138,255 - 20,161,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1320,138,255 - 20,161,052 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,712,394 - 20,735,191 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,610,394 - 19,633,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,614,119 - 19,615,427NCBI
Celera131,774,203 - 1,796,991 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,517,843 - 1,540,632 (-)NCBIHuRef
CHM1_11320,680,889 - 20,703,688 (-)NCBICHM1_1
T2T-CHM13v2.01319,334,689 - 19,357,997 (-)NCBIT2T-CHM13v2.0
Gja3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,271,917 - 57,295,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,271,917 - 57,295,557 (-)EnsemblGRCm39 Ensembl
GRCm381457,034,460 - 57,058,030 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,034,460 - 57,058,100 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,654,497 - 57,676,782 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,989,770 - 56,012,055 (-)NCBIMGSCv36mm8
Celera1454,826,204 - 54,848,538 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1429.82NCBI
Gja3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,296,946 - 35,322,405 (-)NCBIGRCr8
mRatBN7.21531,181,360 - 31,206,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,181,369 - 31,206,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,172,676 - 33,198,138 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01534,323,331 - 34,348,793 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,581,458 - 32,606,917 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01537,298,607 - 37,325,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,299,738 - 37,325,178 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,146,019 - 41,172,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,052,554 - 36,078,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,068,253 - 36,093,701 (-)NCBI
Celera1530,893,821 - 30,919,252 (-)NCBICelera
Cytogenetic Map15p12NCBI
GJA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,771,129 - 19,791,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,875,614 - 10,903,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,464,542 - 1,488,240 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,780,656 - 19,803,446 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,784,372 - 19,785,679 (-)Ensemblpanpan1.1panPan2
GJA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12517,986,270 - 18,004,344 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,002,817 - 18,004,160 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,016,882 - 18,034,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,124,207 - 18,142,180 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,124,215 - 18,143,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12517,990,559 - 18,008,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,002,295 - 18,020,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,058,980 - 18,076,953 (+)NCBIUU_Cfam_GSD_1.0
Gja3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,017,114 - 120,040,168 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,583,588 - 1,584,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,564,680 - 1,586,379 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11750,658 - 751,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111750,658 - 751,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GJA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.13820,352 - 852,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl3846,982 - 848,286 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,732,906 - 43,755,939 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gja3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,579,913 - 17,581,121 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,562,050 - 17,585,308 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GJA3
247 total Variants

1 to 10 of 323 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34
pathogenic
NM_021954.4(GJA3):c.1137dup (p.Ser380fs) duplication Cataract 14 multiple types [RCV000018500] Chr13:20142151..20142152 [GRCh38]
Chr13:20716290..20716291 [GRCh37]
Chr13:13q12.11
pathogenic
NM_021954.4(GJA3):c.723C>A (p.Asp241Glu) single nucleotide variant Cataract 14 multiple types [RCV000542799] Chr13:20142566 [GRCh38]
Chr13:20716705 [GRCh37]
Chr13:13q12.11
uncertain significance
NC_000013.10:g.(?_20716100)_(20717447_?)dup duplication Cataract 14 multiple types [RCV000529409] Chr13:20141961..20143308 [GRCh38]
Chr13:20716100..20717447 [GRCh37]
Chr13:13q12.11
uncertain significance
NM_021954.4(GJA3):c.188A>G (p.Asn63Ser) single nucleotide variant Cataract 14 multiple types [RCV000018499] Chr13:20143101 [GRCh38]
Chr13:20717240 [GRCh37]
Chr13:13q12.11
pathogenic|likely pathogenic
NM_021954.4(GJA3):c.560C>T (p.Pro187Leu) single nucleotide variant Cataract 14 multiple types [RCV000018501] Chr13:20142729 [GRCh38]
Chr13:20716868 [GRCh37]
Chr13:13q12.11
pathogenic|likely pathogenic
NM_021954.4(GJA3):c.227G>A (p.Arg76His) single nucleotide variant Cataract 14 multiple types [RCV000018502] Chr13:20143062 [GRCh38]
Chr13:20717201 [GRCh37]
Chr13:13q12.11
pathogenic|likely pathogenic
NM_021954.4(GJA3):c.563A>C (p.Asn188Thr) single nucleotide variant Cataract 14 multiple types [RCV000043647] Chr13:20142726 [GRCh38]
Chr13:20716865 [GRCh37]
Chr13:13q12.11
pathogenic|likely pathogenic
NM_021954.4(GJA3):c.5G>A (p.Gly2Asp) single nucleotide variant Cataract 14 multiple types [RCV000043648] Chr13:20143284 [GRCh38]
Chr13:20717423 [GRCh37]
Chr13:13q12.11
pathogenic|likely pathogenic
NM_021954.4(GJA3):c.563A>T (p.Asn188Ile) single nucleotide variant Cataract 14 multiple types [RCV000043649] Chr13:20142726 [GRCh38]
Chr13:20716865 [GRCh37]
Chr13:13q12.11
pathogenic|uncertain significance
1 to 10 of 323 rows

Predicted Target Of
Summary Value
Count of predictions:1340
Count of miRNA genes:830
Interacting mature miRNAs:947
Transcripts:ENST00000241125
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597065793GWAS1161867_Hfacial emotion recognition measurement QTL GWAS1161867 (human)0.000003facial emotion recognition measurement132015043320150434Human
597333733GWAS1429807_HS-6-hydroxywarfarin measurement QTL GWAS1429807 (human)0.0000003S-6-hydroxywarfarin measurement132015348920153490Human

D13S141  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371320,724,459 - 20,724,584UniSTSGRCh37
Build 361319,622,459 - 19,622,584RGDNCBI36
Celera131,786,266 - 1,786,391RGD
Cytogenetic Map13q12.11UniSTS
HuRef131,529,906 - 1,530,029UniSTS
UniSTS:480636  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371320,716,120 - 20,717,427UniSTSGRCh37
Celera131,777,929 - 1,779,236UniSTS
HuRef131,521,569 - 1,522,876UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
919 1791 2208 2136 4036 1245 1842 4 385 1471 253 1986 5585 5349 44 2864 710 1604 1347 148 1


1 to 20 of 20 rows
RefSeq Transcripts NG_016399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011535048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF075290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF726530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR003755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT966396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT966397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT966398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT966399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX119953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX119954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX545271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX545272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC730524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 20 of 20 rows

Ensembl Acc Id: ENST00000241125   ⟹   ENSP00000241125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1320,138,255 - 20,161,052 (-)Ensembl
RefSeq Acc Id: NM_021954   ⟹   NP_068773
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381320,138,255 - 20,161,052 (-)NCBI
GRCh371320,712,394 - 20,735,524 (-)NCBI
Build 361319,610,394 - 19,633,183 (-)NCBI Archive
HuRef131,517,843 - 1,540,632 (-)ENTREZGENE
CHM1_11320,680,889 - 20,703,688 (-)NCBI
T2T-CHM13v2.01319,334,689 - 19,357,484 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011535048   ⟹   XP_011533350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381320,138,255 - 20,161,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054374462   ⟹   XP_054230437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01319,334,689 - 19,357,997 (-)NCBI
RefSeq Acc Id: NP_068773   ⟸   NM_021954
- UniProtKB: Q0VAB7 (UniProtKB/Swiss-Prot),   Q9H537 (UniProtKB/Swiss-Prot),   Q9Y6H8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011533350   ⟸   XM_011535048
- Peptide Label: isoform X1
- UniProtKB: Q0VAB7 (UniProtKB/Swiss-Prot),   Q9H537 (UniProtKB/Swiss-Prot),   Q9Y6H8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000241125   ⟸   ENST00000241125
RefSeq Acc Id: XP_054230437   ⟸   XM_054374462
- Peptide Label: isoform X1
- UniProtKB: A0A654IE12 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6H8-F1-model_v2 AlphaFold Q9Y6H8 1-435 view protein structure

RGD ID:6790888
Promoter ID:HG_KWN:17194
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   Lymphoblastoid
Transcripts:OTTHUMT00000044059
Position:
Human AssemblyChrPosition (strand)Source
Build 361319,633,191 - 19,633,972 (-)MPROMDB


1 to 40 of 44 rows
Database
Acc Id
Source(s)
COSMIC GJA3 COSMIC
Ensembl Genes ENSG00000121743 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000241125 ENTREZGENE
  ENST00000241125.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1440.80 UniProtKB/Swiss-Prot
GTEx ENSG00000121743 GTEx
HGNC ID HGNC:4277 ENTREZGENE
Human Proteome Map GJA3 Human Proteome Map
InterPro Connexin UniProtKB/Swiss-Prot
  Connexin46 UniProtKB/Swiss-Prot
  Connexin_C UniProtKB/Swiss-Prot
  Connexin_CCC UniProtKB/Swiss-Prot
  Connexin_CS UniProtKB/Swiss-Prot
  Connexin_N UniProtKB/Swiss-Prot
  Connexin_N_sf UniProtKB/Swiss-Prot
KEGG Report hsa:2700 UniProtKB/Swiss-Prot
NCBI Gene 2700 ENTREZGENE
OMIM 121015 OMIM
PANTHER PTHR11984 UniProtKB/Swiss-Prot
  PTHR11984:SF12 UniProtKB/Swiss-Prot
Pfam Connexin UniProtKB/Swiss-Prot
PharmGKB PA28688 PharmGKB
PRINTS CONNEXIN UniProtKB/Swiss-Prot
  CONNEXINA3 UniProtKB/Swiss-Prot
PROSITE CONNEXINS_1 UniProtKB/Swiss-Prot
  CONNEXINS_2 UniProtKB/Swiss-Prot
SMART CNX UniProtKB/Swiss-Prot
  Connexin_CCC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF118220 UniProtKB/Swiss-Prot
UniProt A0A140CTW5_HUMAN UniProtKB/TrEMBL
  A0A140CTW6_HUMAN UniProtKB/TrEMBL
  A0A140CTW7_HUMAN UniProtKB/TrEMBL
  A0A140CTW8_HUMAN UniProtKB/TrEMBL
  A0A1B1PFX4_HUMAN UniProtKB/TrEMBL
  A0A1B1PFX6_HUMAN UniProtKB/TrEMBL
  A0A1B3B2J5_HUMAN UniProtKB/TrEMBL
  A0A1B3B2J9_HUMAN UniProtKB/TrEMBL
  A0A654IE12 ENTREZGENE, UniProtKB/TrEMBL
  CXA3_HUMAN UniProtKB/Swiss-Prot
  Q0VAB7 ENTREZGENE
1 to 40 of 44 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 GJA3  gap junction protein alpha 3  CZP2  cataract, zonular pulverulent 2  Data merged from RGD:1354363 737654 PROVISIONAL
2015-11-17 GJA3  gap junction protein alpha 3    gap junction protein, alpha 3, 46kDa  Symbol and/or name change 5135510 APPROVED