GJA3 (gap junction protein alpha 3) - Rat Genome Database

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Gene: GJA3 (gap junction protein alpha 3) Chlorocebus sabaeus
Analyze
Symbol: GJA3
Name: gap junction protein alpha 3
RGD ID: 18498132
Description: ENCODES a protein that exhibits gap junction channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN response to hydrogen peroxide (ortholog); response to pH (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 3B (ortholog); autosomal recessive nonsyndromic deafness 1A (ortholog); autosomal recessive nonsyndromic deafness 1B (ortholog); FOUND IN gap junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gap junction alpha-3 protein
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.13820,352 - 852,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl3846,982 - 848,286 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,732,906 - 43,755,939 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green MonkeyCataract, Autosomal Dominant Nuclear  ISOGJA3 (Homo sapiens)9068941DNA:missense mutation:cds:p.N188T (human)RGDPMID:15448617 and REF_RGD_ID:1578473
1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green Monkeyautosomal dominant nonsyndromic deafness 3B  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal dominant 3bClinVarPMID:28492532
GJA3Green Monkeyautosomal recessive nonsyndromic deafness 1A  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1AClinVarPMID:28492532
GJA3Green Monkeyautosomal recessive nonsyndromic deafness 1B  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Deafness and autosomal recessive 1bClinVarPMID:28492532
GJA3Green Monkeycataract  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cataractClinVarPMID:15208569 more ...
GJA3Green Monkeycataract 1 multiple types  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Zonular Pulverulent CataractClinVar 
GJA3Green Monkeycataract 14 multiple types  ISOGJA3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10205266 more ...
GJA3Green MonkeyClouston syndrome  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Clouston's hidrotic ectodermal dysplasiaClinVarPMID:28492532
GJA3Green MonkeyCongenital Cataracts, Facial Dysmorphism, and Neuropathy  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital Cataracts more ...ClinVarPMID:21031021 more ...
GJA3Green Monkeyectodermal dysplasia  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Hidrotic ectodermal dysplasiaClinVarPMID:28492532
GJA3Green Monkeygenetic disease  ISOGJA3 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green Monkeycataract 14 multiple types  ISOGJA3 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green Monkeycell communication involved_inIEAInterPro:IPR000500 more ...150520179 InterProGO_REF:0000002
GJA3Green Monkeycell-cell signaling involved_inIEAPANTHER:PTN002633666150520179 TreeGrafterGO_REF:0000118
GJA3Green Monkeygap junction-mediated intercellular transport involved_inIEAUniProtKB:Q9Y6H8 and ensembl:ENSP00000241125150520179 EnsemblGO_REF:0000107
GJA3Green Monkeyresponse to hydrogen peroxide  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:15467523 and REF_RGD_ID:1599825
GJA3Green Monkeyresponse to pH  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:11889584 and REF_RGD_ID:1599826
GJA3Green Monkeytransmembrane transport involved_inIEAGO:0005243 and GO:0055077150520179 GOCGO_REF:0000108
GJA3Green Monkeyvisual perception involved_inIEAInterPro:IPR002262150520179 InterProGO_REF:0000002

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green Monkeyanchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
GJA3Green Monkeyconnexin complex part_ofIEAInterPro:IPR000500 and InterPro:IPR017990150520179 InterProGO_REF:0000002
GJA3Green Monkeyconnexin complex part_ofIEAPANTHER:PTN002633666150520179 TreeGrafterGO_REF:0000118
GJA3Green Monkeyconnexin complex part_ofIEAUniProtKB:Q9Y6H8 and ensembl:ENSP00000241125150520179 EnsemblGO_REF:0000107
GJA3Green Monkeygap junction  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:1659572 and REF_RGD_ID:728416
GJA3Green Monkeygap junction located_inIEAARBA:ARBA00028360150520179 UniProtGO_REF:0000117
GJA3Green Monkeygap junction located_inIEAUniProtKB-SubCell:SL-0124150520179 UniProtGO_REF:0000044
GJA3Green Monkeygap junction located_inIEAInterPro:IPR002262150520179 InterProGO_REF:0000002
GJA3Green Monkeygap junction located_inIEAUniProtKB:Q64448 and ensembl:ENSMUSP00000059587150520179 EnsemblGO_REF:0000107
GJA3Green Monkeygap junction located_inIEAUniProtKB-KW:KW-0303150520179 UniProtGO_REF:0000043
GJA3Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GJA3Green Monkeyplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
GJA3Green Monkeyplasma membrane located_inIEAUniProtKB:Q64448 more ...150520179 EnsemblGO_REF:0000107
GJA3Green Monkeyplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
1 to 14 of 14 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GJA3Green Monkeygap junction channel activity  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:1659572 and REF_RGD_ID:728416
GJA3Green Monkeygap junction channel activity enablesIEAPANTHER:PTN002633666150520179 TreeGrafterGO_REF:0000118
GJA3Green Monkeygap junction channel activity enablesIEAInterPro:IPR002262150520179 InterProGO_REF:0000002
GJA3Green Monkeygap junction hemi-channel activity enablesIEAUniProtKB:Q9Y6H8 and ensembl:ENSP00000241125150520179 EnsemblGO_REF:0000107
GJA3Green Monkeyidentical protein binding  ISOGja3 (Rattus norvegicus)9068941 RGDPMID:9151687 and REF_RGD_ID:1599827
GJA3Green Monkeyprotein binding  ISOCav1 (Rattus norvegicus)9068941 RGDPMID:15467523 and REF_RGD_ID:1599825

PMID:22301074   PMID:30032202  



GJA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.13820,352 - 852,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl3846,982 - 848,286 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,732,906 - 43,755,939 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GJA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381320,138,255 - 20,161,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1320,138,255 - 20,161,052 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,712,394 - 20,735,191 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,610,394 - 19,633,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,614,119 - 19,615,427NCBI
Celera131,774,203 - 1,796,991 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,517,843 - 1,540,632 (-)NCBIHuRef
CHM1_11320,680,889 - 20,703,688 (-)NCBICHM1_1
T2T-CHM13v2.01319,334,689 - 19,357,997 (-)NCBIT2T-CHM13v2.0
Gja3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,271,917 - 57,295,487 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,271,917 - 57,295,557 (-)EnsemblGRCm39 Ensembl
GRCm381457,034,460 - 57,058,030 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,034,460 - 57,058,100 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,654,497 - 57,676,782 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,989,770 - 56,012,055 (-)NCBIMGSCv36mm8
Celera1454,826,204 - 54,848,538 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1429.82NCBI
Gja3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,296,946 - 35,322,405 (-)NCBIGRCr8
mRatBN7.21531,181,360 - 31,206,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,181,369 - 31,206,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,172,676 - 33,198,138 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01534,323,331 - 34,348,793 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,581,458 - 32,606,917 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01537,298,607 - 37,325,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,299,738 - 37,325,178 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,146,019 - 41,172,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,052,554 - 36,078,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,068,253 - 36,093,701 (-)NCBI
Celera1530,893,821 - 30,919,252 (-)NCBICelera
Cytogenetic Map15p12NCBI
GJA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,771,129 - 19,791,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,875,614 - 10,903,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,464,542 - 1,488,240 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,780,656 - 19,803,446 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,784,372 - 19,785,679 (-)Ensemblpanpan1.1panPan2
GJA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12517,986,270 - 18,004,344 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,002,817 - 18,004,160 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,016,882 - 18,034,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,124,207 - 18,142,180 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,124,215 - 18,143,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12517,990,559 - 18,008,503 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,002,295 - 18,020,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,058,980 - 18,076,953 (+)NCBIUU_Cfam_GSD_1.0
Gja3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,017,114 - 120,040,168 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,583,588 - 1,584,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,564,680 - 1,586,379 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11750,658 - 751,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111750,658 - 751,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Gja3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,579,913 - 17,581,121 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,562,050 - 17,585,308 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GJA3
886 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20


RefSeq Transcripts XM_008021675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008021676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000018677   ⟹   ENSCSAP00000018120
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl3846,982 - 848,286 (+)Ensembl
RefSeq Acc Id: XM_008021675   ⟹   XP_008019866
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.13829,534 - 852,003 (+)NCBI
Vero_WHO_p1.0NW_02366605743,732,906 - 43,755,939 (-)NCBI
Sequence:
Protein RefSeqs XP_008019866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018120.1
RefSeq Acc Id: XP_008019866   ⟸   XM_008021675
- UniProtKB: A0A0D9SB81 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018120   ⟸   ENSCSAT00000018677



1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000018587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018677.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.80 UniProtKB/TrEMBL
InterPro Connexin UniProtKB/TrEMBL
  Connexin46 UniProtKB/TrEMBL
  Connexin_C UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
  Connexin_CS UniProtKB/TrEMBL
  Connexin_N UniProtKB/TrEMBL
  Connexin_N_sf UniProtKB/TrEMBL
KEGG Report csab:103248968 UniProtKB/TrEMBL
NCBI Gene GJA3 ENTREZGENE
PANTHER PTHR11984 UniProtKB/TrEMBL
  PTHR11984:SF12 UniProtKB/TrEMBL
Pfam Connexin UniProtKB/TrEMBL
PRINTS CONNEXIN UniProtKB/TrEMBL
  CONNEXINA3 UniProtKB/TrEMBL
PROSITE CONNEXINS_1 UniProtKB/TrEMBL
  CONNEXINS_2 UniProtKB/TrEMBL
SMART CNX UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
Superfamily-SCOP SSF118220 UniProtKB/TrEMBL
UniProt A0A0D9SB81 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows