Or5k15 (olfactory receptor family 5 subfamily K member 15) - Rat Genome Database

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Gene: Or5k15 (olfactory receptor family 5 subfamily K member 15) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or5k15
Name: olfactory receptor family 5 subfamily K member 15
RGD ID: 1333735
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR5K4 (olfactory receptor family 5 subfamily K member 4).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ENSRNOG00000068996; LOC100909884; olfactory receptor 1560; olfactory receptor 178; olfactory receptor gene Olr1560; olfactory receptor Olfr180-like; olfactory receptor Olr1560; Olfr178; Olr1560
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,081,597 - 55,082,550 (+)NCBIGRCr8
mRatBN7.21141,612,401 - 41,613,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1141,610,529 - 41,613,423 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1141,610,529 - 41,613,423 (+)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,361,475 - 50,362,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,032,776 - 43,033,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,161,411 - 42,162,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,710,705 - 43,711,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,733,244 - 43,734,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,710,705 - 43,711,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,895,864 - 46,896,817 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,418,701 - 42,419,654 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,476,289 - 42,477,243 (+)NCBI
Celera1141,415,788 - 41,416,741 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5k15Ratdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or5k15Ratdetection of chemical stimulus involved in sensory perception of smell  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or5k15RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or5k15RatG protein-coupled receptor signaling pathway  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or5k15RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or5k15Ratsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or5k15Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5k15Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Or5k15Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or5k15Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Or5k15Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5k15RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or5k15RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or5k15Ratodorant binding enablesIBAMGI:3030853 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or5k15Ratolfactory receptor activity enablesIBAMGI:3030069 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or5k15Ratolfactory receptor activity  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or5k15Ratolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5k15Rattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Or5k15
2 total Variants

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:91
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000060869, ENSRNOT00000075812
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
11528648Bss118Bone structure and strength QTL 1186.6582e-07femur strength trait (VT:0010010)femur ultimate displacement (CMO:0002719)114063876343376331Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat

1 to 10 of 18 rows



ectoderm
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
reproductive system
respiratory system
1 1 1 1 2 2 2 1


RefSeq Transcripts NM_001001009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000060869   ⟹   ENSRNOP00000057592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1143,733,244 - 43,734,197 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075812   ⟹   ENSRNOP00000065977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1141,610,529 - 41,613,423 (+)Ensembl
Rnor_6.0 Ensembl1143,710,705 - 43,711,658 (+)Ensembl
RefSeq Acc Id: NM_001001009   ⟹   NP_001001009
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,081,597 - 55,082,550 (+)NCBI
mRatBN7.21141,612,401 - 41,613,354 (+)NCBI
Rnor_6.01143,710,705 - 43,711,658 (+)NCBI
Rnor_5.01146,895,864 - 46,896,817 (+)NCBI
RGSC_v3.41142,418,701 - 42,419,654 (+)RGD
Celera1141,415,788 - 41,416,741 (+)RGD
Sequence:
Protein RefSeqs NP_001001009 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065977
  ENSRNOP00000065977.2
RefSeq Acc Id: NP_001001009   ⟸   NM_001001009
- UniProtKB: A6IQK3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065977   ⟸   ENSRNOT00000075812
Ensembl Acc Id: ENSRNOP00000057592   ⟸   ENSRNOT00000060869
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-D4AC51-F1-model_v2 AlphaFold D4AC51 1-317 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21580 BioCyc
Ensembl Genes ENSRNOG00000045930 Ensembl
  ENSRNOG00000050365 Ensembl
  ENSRNOG00000068996 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000077350 ENTREZGENE
Ensembl Transcript ENSRNOT00000075812 ENTREZGENE
  ENSRNOT00000075812.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene 405383 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5k15 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045930 RatGTEx
  ENSRNOG00000050365 RatGTEx
  ENSRNOG00000068996 RatGTEx
  ENSRNOG00000077350 RatGTEx
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6IQK3 ENTREZGENE, UniProtKB/TrEMBL
  M0R917_RAT UniProtKB/TrEMBL
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or5k15  olfactory receptor family 5 subfamily K member 15  Olr1560  olfactory receptor 1560  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr1560  olfactory receptor 1560  Olfr178  olfactory receptor 178  Data merged from RGD:150344329 737654 PROVISIONAL
2022-01-06 Olfr178  olfactory receptor 178  ENSRNOG00000068996    Symbol and/or name change 19259462 PROVISIONAL
2021-08-31 ENSRNOG00000068996        Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Olr1560  olfactory receptor 1560  LOC100909884  olfactory receptor Olfr180-like  Data merged from RGD:6501340 737654 PROVISIONAL
2012-07-05 LOC100909884  olfactory receptor Olfr180-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Olr1560  olfactory receptor 1560   Olr1560_predicted  olfactory receptor 1560 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1560_predicted  olfactory receptor 1560 (predicted)      Symbol and Name status set to approved 70820 APPROVED