VGLL4 (vestigial like family member 4) - Rat Genome Database

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Gene: VGLL4 (vestigial like family member 4) Homo sapiens
Analyze
Symbol: VGLL4
Name: vestigial like family member 4
RGD ID: 1323223
HGNC Page HGNC:28966
Description: Predicted to enable transcription coactivator binding activity. Involved in negative regulation of Wnt signaling pathway; negative regulation of cell growth; and negative regulation of hippo signaling. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KIAA0121; transcription cofactor vestigial-like protein 4; vestigial like 4; Vestigial-like 4; vestigial-like family member 4; VGL-4
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38311,556,067 - 11,721,815 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl311,556,069 - 11,771,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37311,597,541 - 11,762,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36311,572,544 - 11,737,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 34311,572,543 - 11,737,037NCBI
Celera311,532,949 - 11,697,489 (-)NCBICelera
Cytogenetic Map3p25.3-p25.2NCBI
HuRef311,531,091 - 11,695,667 (-)NCBIHuRef
CHM1_1311,547,671 - 11,712,219 (-)NCBICHM1_1
T2T-CHM13v2.0311,551,371 - 11,717,542 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (EXP)
amphetamine  (ISO)
antimycin A  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
caffeine  (EXP)
calcitriol  (EXP)
carbon nanotube  (ISO)
chloroprene  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP)
coumestrol  (EXP)
cyclosporin A  (EXP)
cytarabine  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
doxorubicin  (EXP)
endosulfan  (ISO)
ethanol  (EXP,ISO)
fenpyroximate  (EXP)
fenthion  (ISO)
FR900359  (EXP)
fulvestrant  (EXP)
furan  (ISO)
indometacin  (EXP)
inulin  (ISO)
ketoconazole  (EXP)
menadione  (EXP)
metformin  (ISO)
methapyrilene  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (EXP)
tamoxifen  (ISO)
tebufenpyrad  (EXP)
tert-butyl hydroperoxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP)
vitamin E  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8590280   PMID:8889548   PMID:12477932   PMID:14702039   PMID:15140898   PMID:15489334   PMID:16344560   PMID:18029348   PMID:19240061   PMID:19322201   PMID:20379614   PMID:20702774  
PMID:21044950   PMID:21079607   PMID:21839727   PMID:21873635   PMID:22094256   PMID:23319000   PMID:23765749   PMID:24068947   PMID:24458094   PMID:24525233   PMID:24983835   PMID:25352025  
PMID:25429064   PMID:25701461   PMID:26186194   PMID:26460480   PMID:26760575   PMID:26972000   PMID:28042509   PMID:28051067   PMID:28514442   PMID:28611215   PMID:28733631   PMID:28739871  
PMID:29117863   PMID:29512748   PMID:29513927   PMID:29882479   PMID:30396996   PMID:31559693   PMID:31748508   PMID:32296183   PMID:33141998   PMID:33506898   PMID:33961781   PMID:34004031  
PMID:34075638   PMID:34396425   PMID:35140242   PMID:35563538   PMID:36657637   PMID:38334954  


Genomics

Comparative Map Data
VGLL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38311,556,067 - 11,721,815 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl311,556,069 - 11,771,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37311,597,541 - 11,762,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36311,572,544 - 11,737,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 34311,572,543 - 11,737,037NCBI
Celera311,532,949 - 11,697,489 (-)NCBICelera
Cytogenetic Map3p25.3-p25.2NCBI
HuRef311,531,091 - 11,695,667 (-)NCBIHuRef
CHM1_1311,547,671 - 11,712,219 (-)NCBICHM1_1
T2T-CHM13v2.0311,551,371 - 11,717,542 (-)NCBIT2T-CHM13v2.0
Vgll4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396114,836,850 - 114,946,932 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6114,837,589 - 114,946,955 (-)EnsemblGRCm39 Ensembl
GRCm386114,860,621 - 114,970,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6114,860,628 - 114,969,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv376114,812,108 - 114,871,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366114,827,709 - 114,887,371 (-)NCBIMGSCv36mm8
Celera6116,699,571 - 116,759,386 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.07NCBI
Vgll4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84149,598,151 - 149,711,186 (-)NCBIGRCr8
mRatBN7.24147,925,630 - 148,038,519 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4147,927,034 - 148,038,471 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,151,173 - 154,264,033 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04149,934,223 - 150,047,087 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04148,558,058 - 148,670,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04146,778,556 - 146,890,063 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4146,779,276 - 146,839,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,069,578 - 210,129,654 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44150,995,533 - 151,055,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14151,240,377 - 151,300,577 (-)NCBI
Celera4136,824,155 - 136,883,668 (-)NCBICelera
Cytogenetic Map4q42NCBI
Vgll4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542914,303,682 - 14,400,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542914,301,509 - 14,413,163 (-)NCBIChiLan1.0ChiLan1.0
VGLL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,549,922 - 11,715,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1311,554,683 - 11,719,713 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0311,489,805 - 11,654,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1311,834,746 - 11,999,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl311,834,746 - 11,981,877 (-)Ensemblpanpan1.1panPan2
VGLL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1206,751,951 - 6,915,650 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl206,751,801 - 6,913,201 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha206,788,411 - 6,951,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0206,781,024 - 6,944,924 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl206,780,872 - 6,973,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1206,498,117 - 6,661,200 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0206,854,645 - 7,017,774 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0206,825,251 - 6,988,564 (+)NCBIUU_Cfam_GSD_1.0
Vgll4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494216,971,272 - 17,120,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366021,815,313 - 1,936,031 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366021,789,479 - 1,938,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VGLL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1367,698,083 - 67,872,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11367,698,082 - 67,873,119 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21374,916,759 - 74,947,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VGLL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12247,572,345 - 47,734,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2247,574,828 - 47,658,057 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041118,782,175 - 118,944,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vgll4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624943113,215 - 232,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VGLL4
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p25.3-25.2(chr3:8581778-12015238)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051480]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051480]|See cases [RCV000051480] Chr3:8581778..12015238 [GRCh38]
Chr3:8623464..12056738 [GRCh37]
Chr3:8598464..12031738 [NCBI36]
Chr3:3p25.3-25.2		 pathogenic
GRCh38/hg38 3p25.3-25.2(chr3:10019780-12251358)x1 copy number loss See cases [RCV000051506] Chr3:10019780..12251358 [GRCh38]
Chr3:10061464..12292857 [GRCh37]
Chr3:10036464..12267857 [NCBI36]
Chr3:3p25.3-25.2		 pathogenic
GRCh38/hg38 3p26.3-22.2(chr3:52266-37148076)x3 copy number gain See cases [RCV000051097] Chr3:52266..37148076 [GRCh38]
Chr3:93949..37189567 [GRCh37]
Chr3:68949..37164571 [NCBI36]
Chr3:3p26.3-22.2		 pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:52066-20280127)x3 copy number gain See cases [RCV000051690] Chr3:52066..20280127 [GRCh38]
Chr3:93749..20321619 [GRCh37]
Chr3:68749..20296623 [NCBI36]
Chr3:3p26.3-24.3		 pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:52266-29248782)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|See cases [RCV000051718] Chr3:52266..29248782 [GRCh38]
Chr3:93949..29290273 [GRCh37]
Chr3:68949..29265277 [NCBI36]
Chr3:3p26.3-24.1		 pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:63843-19510600)x3 copy number gain See cases [RCV000051719] Chr3:63843..19510600 [GRCh38]
Chr3:105526..19552092 [GRCh37]
Chr3:80526..19527096 [NCBI36]
Chr3:3p26.3-24.3		 pathogenic
GRCh38/hg38 3p25.3-22.2(chr3:11463328-38919543)x3 copy number gain See cases [RCV000051720] Chr3:11463328..38919543 [GRCh38]
Chr3:11504802..38961034 [GRCh37]
Chr3:11479802..38936038 [NCBI36]
Chr3:3p25.3-22.2		 pathogenic
GRCh38/hg38 3p25.3-25.2(chr3:9394874-11690612)x1 copy number loss See cases [RCV000137433] Chr3:9394874..11690612 [GRCh38]
Chr3:9436558..11732086 [GRCh37]
Chr3:9411558..11707086 [NCBI36]
Chr3:3p25.3-25.2		 pathogenic
GRCh38/hg38 3p26.1-25.2(chr3:7975734-12636917)x3 copy number gain See cases [RCV000137309] Chr3:7975734..12636917 [GRCh38]
Chr3:8017421..12678416 [GRCh37]
Chr3:7992421..12653416 [NCBI36]
Chr3:3p26.1-25.2		 likely pathogenic
GRCh38/hg38 3p26.3-25.2(chr3:32241-12681483)x1 copy number loss See cases [RCV000138143] Chr3:32241..12681483 [GRCh38]
Chr3:73914..12722982 [GRCh37]
Chr3:48914..12697982 [NCBI36]
Chr3:3p26.3-25.2		 pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:32241-30064208)x3 copy number gain See cases [RCV000138004] Chr3:32241..30064208 [GRCh38]
Chr3:73914..30105699 [GRCh37]
Chr3:48914..30080703 [NCBI36]
Chr3:3p26.3-24.1		 pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:32241-20334387)x3 copy number gain See cases [RCV000137941] Chr3:32241..20334387 [GRCh38]
Chr3:73914..20375879 [GRCh37]
Chr3:48914..20350883 [NCBI36]
Chr3:3p26.3-24.3		 pathogenic
GRCh38/hg38 3p26.3-25.1(chr3:32241-13613818)x3 copy number gain See cases [RCV000138946] Chr3:32241..13613818 [GRCh38]
Chr3:73914..13655318 [GRCh37]
Chr3:48914..13630319 [NCBI36]
Chr3:3p26.3-25.1		 pathogenic
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3 copy number gain See cases [RCV000141810] Chr3:53308..41381521 [GRCh38]
Chr3:94991..41423012 [GRCh37]
Chr3:69991..41398016 [NCBI36]
Chr3:3p26.3-22.1		 pathogenic
GRCh38/hg38 3p26.1-25.1(chr3:7356110-14360442)x3 copy number gain See cases [RCV000143766] Chr3:7356110..14360442 [GRCh38]
Chr3:7397797..14401942 [GRCh37]
Chr3:7372797..14376946 [NCBI36]
Chr3:3p26.1-25.1		 pathogenic
GRCh37/hg19 3p25.3-25.2(chr3:8922160-12338637)x1 copy number loss See cases [RCV000240139] Chr3:8922160..12338637 [GRCh37]
Chr3:3p25.3-25.2		 pathogenic
GRCh37/hg19 3p26.3-24.2(chr3:61891-24432821)x3 copy number gain See cases [RCV000447247] Chr3:61891..24432821 [GRCh37]
Chr3:3p26.3-24.2		 pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181)x3 copy number gain See cases [RCV000448528] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:61891-33958201)x3 copy number gain See cases [RCV000510429] Chr3:61891..33958201 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-37459464)x3 copy number gain See cases [RCV000511463] Chr3:61891..37459464 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-25.2(chr3:61891-12575409)x1 copy number loss See cases [RCV000511155] Chr3:61891..12575409 [GRCh37]
Chr3:3p26.3-25.2		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_001128219.3(VGLL4):c.357G>A (p.Met119Ile) single nucleotide variant not specified [RCV004308083] Chr3:11564935 [GRCh38]
Chr3:11606409 [GRCh37]
Chr3:3p25.3		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-24.3(chr3:1897972-19519085)x3 copy number gain not provided [RCV000682215] Chr3:1897972..19519085 [GRCh37]
Chr3:3p26.3-24.3		 pathogenic
GRCh37/hg19 3p26.1-24.3(chr3:5173870-16760262)x3 copy number gain not provided [RCV000682233] Chr3:5173870..16760262 [GRCh37]
Chr3:3p26.1-24.3		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p25.3-25.2(chr3:11568144-11801890)x3 copy number gain not provided [RCV000742234] Chr3:11568144..11801890 [GRCh37]
Chr3:3p25.3-25.2		 benign
GRCh37/hg19 3p25.3(chr3:11640601-11646405)x1 copy number loss not provided [RCV000742235] Chr3:11640601..11646405 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11640601-11646451)x1 copy number loss not provided [RCV000742236] Chr3:11640601..11646451 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11640601-11646651)x1 copy number loss not provided [RCV000742237] Chr3:11640601..11646651 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11640601-11647173)x1 copy number loss not provided [RCV000742238] Chr3:11640601..11647173 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11640601-11647301)x1 copy number loss not provided [RCV000742239] Chr3:11640601..11647301 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11643465-11646651)x1 copy number loss not provided [RCV000742240] Chr3:11643465..11646651 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11643465-11647301)x1 copy number loss not provided [RCV000742241] Chr3:11643465..11647301 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11645851-11647301)x1 copy number loss not provided [RCV000742242] Chr3:11645851..11647301 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11760629-11761698)x1 copy number loss not provided [RCV000742243] Chr3:11760629..11761698 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11760629-11763001)x1 copy number loss not provided [RCV000742244] Chr3:11760629..11763001 [GRCh37]
Chr3:3p25.3		 benign
GRCh37/hg19 3p25.3(chr3:11760651-11761698)x1 copy number loss not provided [RCV000742245] Chr3:11760651..11761698 [GRCh37]
Chr3:3p25.3		 benign
Single allele duplication Neurodevelopmental disorder [RCV000787461] Chr3:9453917..12015126 [GRCh37]
Chr3:3p25.3-25.2		 uncertain significance
GRCh37/hg19 3p26.3-25.3(chr3:61892-11679509)x1 copy number loss not provided [RCV002473616] Chr3:61892..11679509 [GRCh37]
Chr3:3p26.3-25.3		 pathogenic
NM_001128219.3(VGLL4):c.629C>A (p.Thr210Asn) single nucleotide variant not specified [RCV004688622] Chr3:11558818 [GRCh38]
Chr3:11600292 [GRCh37]
Chr3:3p25.3		 uncertain significance
GRCh37/hg19 3p25.3-25.2(chr3:10922740-12456978)x1 copy number loss not provided [RCV001827612] Chr3:10922740..12456978 [GRCh37]
Chr3:3p25.3-25.2		 pathogenic
GRCh37/hg19 3p25.3-25.2(chr3:10970972-12295919)x1 copy number loss Schizophrenia [RCV001825255] Chr3:10970972..12295919 [GRCh37]
Chr3:3p25.3-25.2		 not provided
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181) copy number gain not specified [RCV002053300] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-24.2(chr3:61891-24432821) copy number gain not specified [RCV002053299] Chr3:61891..24432821 [GRCh37]
Chr3:3p26.3-24.2		 pathogenic
GRCh37/hg19 3p25.3(chr3:11363030-11670349)x3 copy number gain not provided [RCV002472594] Chr3:11363030..11670349 [GRCh37]
Chr3:3p25.3		 uncertain significance
GRCh37/hg19 3p25.3-25.2(chr3:10024917-11917048)x1 copy number loss not provided [RCV002472495] Chr3:10024917..11917048 [GRCh37]
Chr3:3p25.3-25.2		 pathogenic
NM_001128219.3(VGLL4):c.524C>T (p.Ser175Leu) single nucleotide variant not specified [RCV004201820] Chr3:11559427 [GRCh38]
Chr3:11600901 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.452C>T (p.Pro151Leu) single nucleotide variant not specified [RCV004200089] Chr3:11564840 [GRCh38]
Chr3:11606314 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.322C>T (p.Arg108Cys) single nucleotide variant not specified [RCV004197596] Chr3:11564970 [GRCh38]
Chr3:11606444 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.442G>A (p.Ala148Thr) single nucleotide variant not specified [RCV004144483] Chr3:11564850 [GRCh38]
Chr3:11606324 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.226G>A (p.Asp76Asn) single nucleotide variant not specified [RCV004131550] Chr3:11601879 [GRCh38]
Chr3:11643353 [GRCh37]
Chr3:3p25.2		 uncertain significance
NM_001128219.3(VGLL4):c.383C>T (p.Thr128Ile) single nucleotide variant not specified [RCV004131609] Chr3:11564909 [GRCh38]
Chr3:11606383 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.337C>T (p.Arg113Cys) single nucleotide variant not specified [RCV004260525] Chr3:11564955 [GRCh38]
Chr3:11606429 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.310C>T (p.Arg104Trp) single nucleotide variant not specified [RCV004249461] Chr3:11564982 [GRCh38]
Chr3:11606456 [GRCh37]
Chr3:3p25.3		 uncertain significance
GRCh37/hg19 3p25.3-25.2(chr3:10167260-12533766)x1 copy number loss See cases [RCV003329496] Chr3:10167260..12533766 [GRCh37]
Chr3:3p25.3-25.2		 pathogenic
NM_001128219.3(VGLL4):c.605G>A (p.Arg202Gln) single nucleotide variant not specified [RCV004340919] Chr3:11559346 [GRCh38]
Chr3:11600820 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.157G>A (p.Gly53Ser) single nucleotide variant not specified [RCV004355138] Chr3:11601948 [GRCh38]
Chr3:11643422 [GRCh37]
Chr3:3p25.2		 uncertain significance
GRCh37/hg19 3p26.3-24.1(chr3:310747-28297447)x3 copy number gain not provided [RCV003484107] Chr3:310747..28297447 [GRCh37]
Chr3:3p26.3-24.1		 pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:61891-33946644)x3 copy number gain not specified [RCV003986437] Chr3:61891..33946644 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_001128219.3(VGLL4):c.441C>T (p.Asp147=) single nucleotide variant EBV-positive nodal T- and NK-cell lymphoma [RCV004558043] Chr3:11564851 [GRCh38]
Chr3:11606325 [GRCh37]
Chr3:3p25.3		 likely benign
NM_001128219.3(VGLL4):c.367G>A (p.Gly123Ser) single nucleotide variant not specified [RCV004482412] Chr3:11564925 [GRCh38]
Chr3:11606399 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.382A>G (p.Thr128Ala) single nucleotide variant not specified [RCV004482413] Chr3:11564910 [GRCh38]
Chr3:11606384 [GRCh37]
Chr3:3p25.3		 likely benign
NM_001128219.3(VGLL4):c.424A>G (p.Thr142Ala) single nucleotide variant not specified [RCV004482414] Chr3:11564868 [GRCh38]
Chr3:11606342 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.464C>T (p.Ser155Leu) single nucleotide variant not specified [RCV004482416] Chr3:11564828 [GRCh38]
Chr3:11606302 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_014667.4(VGLL4):c.50C>A (p.Ala17Asp) single nucleotide variant not specified [RCV004482417] Chr3:11702985 [GRCh38]
Chr3:11744459 [GRCh37]
Chr3:3p25.2		 uncertain significance
NM_001128219.3(VGLL4):c.589G>A (p.Gly197Arg) single nucleotide variant not specified [RCV004482418] Chr3:11559362 [GRCh38]
Chr3:11600836 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.298C>T (p.Arg100Cys) single nucleotide variant not specified [RCV004482411] Chr3:11564994 [GRCh38]
Chr3:11606468 [GRCh37]
Chr3:3p25.3		 uncertain significance
GRCh37/hg19 3p26.3-22.3(chr3:60000-34461438)x3 copy number gain not provided [RCV004577500] Chr3:60000..34461438 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_001128219.3(VGLL4):c.125C>A (p.Pro42Gln) single nucleotide variant not specified [RCV004482409] Chr3:11601980 [GRCh38]
Chr3:11643454 [GRCh37]
Chr3:3p25.2		 uncertain significance
NM_001128219.3(VGLL4):c.163C>T (p.Pro55Ser) single nucleotide variant not specified [RCV004482410] Chr3:11601942 [GRCh38]
Chr3:11643416 [GRCh37]
Chr3:3p25.2		 uncertain significance
NM_001128219.3(VGLL4):c.457G>C (p.Gly153Arg) single nucleotide variant not specified [RCV004482415] Chr3:11564835 [GRCh38]
Chr3:11606309 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.691G>A (p.Glu231Lys) single nucleotide variant not specified [RCV004482419] Chr3:11558756 [GRCh38]
Chr3:11600230 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.820C>T (p.Arg274Cys) single nucleotide variant not specified [RCV004482420] Chr3:11558627 [GRCh38]
Chr3:11600101 [GRCh37]
Chr3:3p25.3		 uncertain significance
NM_001128219.3(VGLL4):c.855G>C (p.Met285Ile) single nucleotide variant not specified [RCV004482421] Chr3:11558592 [GRCh38]
Chr3:11600066 [GRCh37]
Chr3:3p25.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5843
Count of miRNA genes:1229
Interacting mature miRNAs:1574
Transcripts:ENST00000273038, ENST00000404339, ENST00000413604, ENST00000417206, ENST00000417466, ENST00000418000, ENST00000419541, ENST00000424529, ENST00000424709, ENST00000426568, ENST00000430365, ENST00000437722, ENST00000445411, ENST00000451674, ENST00000458499, ENST00000463387, ENST00000480288
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407023043GWAS672019_HHVA measurement QTL GWAS672019 (human)0.000002HVA measurement31158394011583941Human
407096642GWAS745618_Hbody mass index QTL GWAS745618 (human)5e-08body mass indexbody mass index (BMI) (CMO:0000105)31161390711613908Human
407074369GWAS723345_Hbalding measurement QTL GWAS723345 (human)5e-14balding measurementcoat/hair morphological measurement (CMO:0001807)31156664011566641Human
406989126GWAS638102_Hbirth weight, parental genotype effect measurement QTL GWAS638102 (human)3e-08birth weight, parental genotype effect measurementneonatal body weight (CMO:0002079)31159503411595035Human
407043398GWAS692374_Hbody mass index QTL GWAS692374 (human)8e-12body mass indexbody mass index (BMI) (CMO:0000105)31159900711599008Human
407416910GWAS1065886_Hpulse pressure measurement QTL GWAS1065886 (human)0.0000009pulse pressure measurementpulse pressure (CMO:0000292)31163595311635954Human
407161548GWAS810524_Hbody mass index QTL GWAS810524 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
406894539GWAS543515_HHVA measurement, 5-HIAA measurement QTL GWAS543515 (human)0.000008HVA measurement, 5-HIAA measurementcervical spinal cord 5-HIAA level (CMO:0003127)31158394011583941Human
407011919GWAS660895_HAgents acting on the renin-angiotensin system use measurement QTL GWAS660895 (human)6e-09Agents acting on the renin-angiotensin system use measurement31156264511562646Human
406897101GWAS546077_Hbody surface area QTL GWAS546077 (human)3e-09body surface area31158877811588779Human
407276489GWAS925465_Hspontaneous preterm birth QTL GWAS925465 (human)0.000001spontaneous preterm birth31160809011608091Human
406973265GWAS622241_Hbody mass index QTL GWAS622241 (human)5e-10body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
407195093GWAS844069_Hbody height QTL GWAS844069 (human)2e-09body height (VT:0001253)body height (CMO:0000106)31163634911636350Human
407094609GWAS743585_Hbalding measurement QTL GWAS743585 (human)4e-20balding measurementcoat/hair morphological measurement (CMO:0001807)31156664011566641Human
407081046GWAS730022_Hbody mass index QTL GWAS730022 (human)4e-10body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
407133907GWAS782883_HIschemic stroke QTL GWAS782883 (human)0.0000002Ischemic stroke31160263811602639Human
407128285GWAS777261_Hhandedness QTL GWAS777261 (human)0.000009handedness31165299311652994Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407093212GWAS742188_Hhair color QTL GWAS742188 (human)1e-08hair color31162081811620819Human
407246178GWAS895154_Happendicular lean mass QTL GWAS895154 (human)6e-13appendicular lean mass31158877811588779Human
406904933GWAS553909_Hsusceptibility to chronic sinus infection measurement QTL GWAS553909 (human)0.000005susceptibility to chronic sinus infection measurement31162400911624010Human
407317871GWAS966847_Hbody weight QTL GWAS966847 (human)1e-11body mass (VT:0001259)body weight (CMO:0000012)31159415711594158Human
407347436GWAS996412_Hinsomnia QTL GWAS996412 (human)2e-08insomnia31156001911560020Human
406922605GWAS571581_Hbody height QTL GWAS571581 (human)1e-13body height (VT:0001253)body height (CMO:0000106)31163634911636350Human
407038445GWAS687421_Hchronic obstructive pulmonary disease QTL GWAS687421 (human)5e-20chronic obstructive pulmonary disease31160064011600641Human
407201270GWAS850246_Htotal hip arthroplasty, osteoarthritis QTL GWAS850246 (human)3e-09total hip arthroplasty, osteoarthritis31160199111601992Human
407005813GWAS654789_HFEV/FVC ratio QTL GWAS654789 (human)3e-25FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)31161085711610858Human
407157875GWAS806851_HRS-10-hydroxywarfarin to RS-warfarin ratio measurement QTL GWAS806851 (human)0.000006RS-10-hydroxywarfarin to RS-warfarin ratio measurement31163689811636899Human
407063419GWAS712395_Hbody mass index QTL GWAS712395 (human)1e-08body mass indexbody mass index (BMI) (CMO:0000105)31159247711592478Human
407356157GWAS1005133_HBMI-adjusted hip circumference QTL GWAS1005133 (human)2e-09BMI-adjusted hip circumferencehip circumference (CMO:0000014)31166026011660261Human
407356156GWAS1005132_HBMI-adjusted hip circumference QTL GWAS1005132 (human)4e-10BMI-adjusted hip circumferencehip circumference (CMO:0000014)31156772411567725Human
407306619GWAS955595_Hcortex volume change measurement, age at assessment QTL GWAS955595 (human)0.000004cortex volume change measurement, age at assessment31162799711627998Human
407416181GWAS1065157_Hdiastolic blood pressure QTL GWAS1065157 (human)6e-09diastolic blood pressurediastolic blood pressure (CMO:0000005)31163595311635954Human
407203077GWAS852053_HFEV/FVC ratio QTL GWAS852053 (human)1e-20FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)31160064011600641Human
407019264GWAS668240_Hbody height QTL GWAS668240 (human)7e-13body height (VT:0001253)body height (CMO:0000106)31160199111601992Human
407278213GWAS927189_Hbody height QTL GWAS927189 (human)3e-19body height (VT:0001253)body height (CMO:0000106)31163803511638036Human
406963588GWAS612564_Hclopidogrel metabolite measurement QTL GWAS612564 (human)0.000009clopidogrel metabolite measurement31158372811583729Human
407278211GWAS927187_Hbody height QTL GWAS927187 (human)1e-151body height (VT:0001253)body height (CMO:0000106)31160199111601992Human
407066378GWAS715354_Halopecia QTL GWAS715354 (human)2e-09alopecia31156175511561756Human
406960264GWAS609240_Hanorexia nervosa QTL GWAS609240 (human)0.000009anorexia nervosa31163431511634316Human
407389955GWAS1038931_Hprotein measurement QTL GWAS1038931 (human)3e-09protein measurement31158459611584597Human
407055756GWAS704732_Hchronic obstructive pulmonary disease QTL GWAS704732 (human)2e-10chronic obstructive pulmonary disease31159912711599128Human
407086099GWAS735075_Hbody mass index QTL GWAS735075 (human)1e-08body mass indexbody mass index (BMI) (CMO:0000105)31159900711599008Human
407004177GWAS653153_Hinterleukin 4 measurement QTL GWAS653153 (human)0.000002interleukin 4 measurementblood interleukin-4 level (CMO:0003065)31166341111663412Human
406986902GWAS635878_Hdrug allergy, trait in response to platinum QTL GWAS635878 (human)0.000005drug allergy, trait in response to platinum31159916411599165Human
407228048GWAS877024_Hbone density QTL GWAS877024 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)31157088611570887Human
406927892GWAS576868_Hbody height QTL GWAS576868 (human)4e-43body height (VT:0001253)body height (CMO:0000106)31160853611608537Human
407354398GWAS1003374_HBMI-adjusted hip circumference QTL GWAS1003374 (human)1e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)31155988611559887Human
407049757GWAS698733_Hbody height QTL GWAS698733 (human)8e-08body height (VT:0001253)body height (CMO:0000106)31160006111600062Human
407101468GWAS750444_Hcolor vision disorder QTL GWAS750444 (human)0.000002color vision disorder31158499011584991Human
407120806GWAS769782_Hhair colour measurement QTL GWAS769782 (human)8e-16hair colour measurementcoat/hair color measurement (CMO:0001808)31161929211619293Human
407086113GWAS735089_Hpreterm premature rupture of the membranes, spontaneous preterm birth QTL GWAS735089 (human)0.000004preterm premature rupture of the membranes, spontaneous preterm birth31162307511623076Human
407286049GWAS935025_Hbody mass index QTL GWAS935025 (human)2e-11body mass indexbody mass index (BMI) (CMO:0000105)31160064011600641Human
407000869GWAS649845_Hoptic disc area measurement QTL GWAS649845 (human)2e-08optic disc area measurement31161387711613878Human
406885547GWAS534523_Hsystolic blood pressure QTL GWAS534523 (human)2e-11systolic blood pressuresystolic blood pressure (CMO:0000004)31163595311635954Human
406919987GWAS568963_Hlean body mass QTL GWAS568963 (human)7e-09body lean mass (VT:0010483)total body lean mass (CMO:0003950)31158800311588004Human
407334064GWAS983040_Hsystolic blood pressure QTL GWAS983040 (human)1e-09systolic blood pressuresystolic blood pressure (CMO:0000004)31159643311596434Human
407005240GWAS654216_Hgranulocyte colony-stimulating factor measurement QTL GWAS654216 (human)0.000009granulocyte colony-stimulating factor measurement31166517611665177Human
407006521GWAS655497_Hbody height QTL GWAS655497 (human)2e-22body height (VT:0001253)body height (CMO:0000106)31160199111601992Human

Markers in Region
D3S3714  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,668,640 - 11,668,792UniSTSGRCh37
Build 36311,643,640 - 11,643,792RGDNCBI36
Celera311,603,945 - 11,604,097RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,602,119 - 11,602,271UniSTS
Marshfield Genetic Map336.65RGD
Marshfield Genetic Map336.65UniSTS
Genethon Genetic Map330.4UniSTS
deCODE Assembly Map330.16UniSTS
Whitehead-YAC Contig Map3 UniSTS
D3S3680  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,726,147 - 11,726,272UniSTSGRCh37
Build 36311,701,147 - 11,701,272RGDNCBI36
Celera311,661,430 - 11,661,555RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,659,594 - 11,659,721UniSTS
Marshfield Genetic Map336.1RGD
Marshfield Genetic Map336.1UniSTS
Genethon Genetic Map330.4UniSTS
deCODE Assembly Map330.13UniSTS
Stanford-G3 RH Map3522.0UniSTS
Whitehead-YAC Contig Map3 UniSTS
NCBI RH Map3138.4UniSTS
GeneMap99-G3 RH Map3522.0UniSTS
RH15949  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,597,593 - 11,597,730UniSTSGRCh37
Build 36311,572,593 - 11,572,730RGDNCBI36
Celera311,532,998 - 11,533,135RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,531,140 - 11,531,277UniSTS
GeneMap99-GB4 RH Map350.67UniSTS
NCBI RH Map3166.8UniSTS
SHGC-76714  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,738,901 - 11,739,043UniSTSGRCh37
Build 36311,713,901 - 11,714,043RGDNCBI36
Celera311,674,186 - 11,674,328RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,672,353 - 11,672,495UniSTS
GeneMap99-GB4 RH Map352.69UniSTS
NCBI RH Map3162.3UniSTS
RH25345  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,597,726 - 11,597,968UniSTSGRCh37
Build 36311,572,726 - 11,572,968RGDNCBI36
Celera311,533,131 - 11,533,373RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,531,273 - 11,531,515UniSTS
SHGC-144750  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,603,851 - 11,604,172UniSTSGRCh37
Build 36311,578,851 - 11,579,172RGDNCBI36
Celera311,539,257 - 11,539,578RGD
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map3p25.3UniSTS
HuRef311,537,399 - 11,537,720UniSTS
TNG Radiation Hybrid Map37007.0UniSTS
SHGC-76706  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,598,868 - 11,598,998UniSTSGRCh37
Build 36311,573,868 - 11,573,998RGDNCBI36
Celera311,534,273 - 11,534,403RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,532,415 - 11,532,545UniSTS
TNG Radiation Hybrid Map36990.0UniSTS
GeneMap99-GB4 RH Map350.67UniSTS
NCBI RH Map3165.6UniSTS
SHGC-76717  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,599,342 - 11,599,524UniSTSGRCh37
Build 36311,574,342 - 11,574,524RGDNCBI36
Celera311,534,747 - 11,534,929RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,532,889 - 11,533,071UniSTS
TNG Radiation Hybrid Map37002.0UniSTS
GeneMap99-GB4 RH Map352.79UniSTS
NCBI RH Map3132.9UniSTS
RH36277  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,704,043 - 11,704,142UniSTSGRCh37
Build 36311,679,043 - 11,679,142RGDNCBI36
Celera311,639,328 - 11,639,427RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,637,494 - 11,637,593UniSTS
GeneMap99-GB4 RH Map357.32UniSTS
NCBI RH Map3142.6UniSTS
D3S3828  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,597,586 - 11,597,693UniSTSGRCh37
Build 36311,572,586 - 11,572,693RGDNCBI36
Celera311,532,991 - 11,533,098RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,531,133 - 11,531,240UniSTS
Whitehead-YAC Contig Map3 UniSTS
RH48202  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37311,697,826 - 11,697,955UniSTSGRCh37
Build 36311,672,826 - 11,672,955RGDNCBI36
Celera311,633,109 - 11,633,238RGD
Cytogenetic Map3p25.3UniSTS
HuRef311,631,275 - 11,631,404UniSTS
GeneMap99-GB4 RH Map350.85UniSTS
NCBI RH Map3164.5UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2251 4971 1725 2351 5 622 1951 465 2269 7303 6469 53 3732 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001128219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001128220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001128221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC022001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC090939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI809612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU682809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA301780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA321008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA383197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA386938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA496407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA525713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA798358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ384473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR159250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY020255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000273038   ⟹   ENSP00000273038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,556,070 - 11,720,746 (-)Ensembl
Ensembl Acc Id: ENST00000413604   ⟹   ENSP00000404624
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,558,069 - 11,604,581 (-)Ensembl
Ensembl Acc Id: ENST00000414047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,720,456 - 11,724,979 (-)Ensembl
Ensembl Acc Id: ENST00000417206   ⟹   ENSP00000391932
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,564,766 - 11,719,638 (-)Ensembl
Ensembl Acc Id: ENST00000417466   ⟹   ENSP00000411670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,564,848 - 11,719,619 (-)Ensembl
Ensembl Acc Id: ENST00000418000   ⟹   ENSP00000394439
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,559,332 - 11,719,594 (-)Ensembl
Ensembl Acc Id: ENST00000419541   ⟹   ENSP00000395557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,564,892 - 11,710,537 (-)Ensembl
Ensembl Acc Id: ENST00000424529   ⟹   ENSP00000402878
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,558,470 - 11,568,924 (-)Ensembl
Ensembl Acc Id: ENST00000424709   ⟹   ENSP00000391554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,564,852 - 11,612,667 (-)Ensembl
Ensembl Acc Id: ENST00000426568   ⟹   ENSP00000413030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,558,476 - 11,720,722 (-)Ensembl
Ensembl Acc Id: ENST00000430365   ⟹   ENSP00000404251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,556,069 - 11,643,915 (-)Ensembl
Ensembl Acc Id: ENST00000437722   ⟹   ENSP00000393100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,564,915 - 11,610,504 (-)Ensembl
Ensembl Acc Id: ENST00000445411   ⟹   ENSP00000412923
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,558,758 - 11,720,729 (-)Ensembl
Ensembl Acc Id: ENST00000451674   ⟹   ENSP00000416615
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,558,343 - 11,582,391 (-)Ensembl
Ensembl Acc Id: ENST00000458499   ⟹   ENSP00000394123
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,559,351 - 11,627,406 (-)Ensembl
Ensembl Acc Id: ENST00000463387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,699,546 - 11,720,460 (-)Ensembl
Ensembl Acc Id: ENST00000480288
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,601,992 - 11,633,671 (-)Ensembl
Ensembl Acc Id: ENST00000623028   ⟹   ENSP00000485472
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,601,910 - 11,771,350 (-)Ensembl
Ensembl Acc Id: ENST00000638314   ⟹   ENSP00000492281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl311,702,696 - 11,703,034 (-)Ensembl
RefSeq Acc Id: NM_001128219   ⟹   NP_001121691
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,643,915 (-)NCBI
GRCh37311,597,543 - 11,762,220 (-)NCBI
Celera311,532,949 - 11,697,489 (-)RGD
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,634,617 (-)NCBI
T2T-CHM13v2.0311,551,373 - 11,639,661 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001128220   ⟹   NP_001121692
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,582,356 (-)NCBI
GRCh37311,597,543 - 11,762,220 (-)NCBI
Celera311,532,949 - 11,697,489 (-)RGD
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,573,975 (-)NCBI
T2T-CHM13v2.0311,551,373 - 11,577,605 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001128221   ⟹   NP_001121693
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,568,798 (-)NCBI
GRCh37311,597,543 - 11,762,220 (-)NCBI
Celera311,532,949 - 11,697,489 (-)RGD
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,560,526 (-)NCBI
T2T-CHM13v2.0311,551,373 - 11,564,104 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284390   ⟹   NP_001271319
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,720,539 (-)NCBI
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,712,241 (-)NCBI
T2T-CHM13v2.0311,551,373 - 11,716,266 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284391   ⟹   NP_001271320
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,604,581 (-)NCBI
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,599,132 (-)NCBI
T2T-CHM13v2.0311,551,371 - 11,600,403 (-)NCBI
Sequence:
RefSeq Acc Id: NM_014667   ⟹   NP_055482
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,720,539 (-)NCBI
GRCh37311,597,543 - 11,762,220 (-)NCBI
Build 36311,572,544 - 11,737,037 (-)NCBI Archive
Celera311,532,949 - 11,697,489 (-)RGD
HuRef311,531,088 - 11,695,689 (-)NCBI
CHM1_1311,547,668 - 11,712,241 (-)NCBI
T2T-CHM13v2.0311,551,373 - 11,716,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534269   ⟹   XP_011532571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,610,370 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024453835   ⟹   XP_024309603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,719,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024453836   ⟹   XP_024309604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,710,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024453837   ⟹   XP_024309605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,719,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047449259   ⟹   XP_047305215
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,721,815 (-)NCBI
RefSeq Acc Id: XM_047449260   ⟹   XP_047305216
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,702,998 (-)NCBI
RefSeq Acc Id: XM_047449261   ⟹   XP_047305217
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,067 - 11,633,421 (-)NCBI
RefSeq Acc Id: XM_047449262   ⟹   XP_047305218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,721,815 (-)NCBI
RefSeq Acc Id: XM_047449263   ⟹   XP_047305219
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,556,069 - 11,643,915 (-)NCBI
RefSeq Acc Id: XM_054348499   ⟹   XP_054204474
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,717,542 (-)NCBI
RefSeq Acc Id: XM_054348500   ⟹   XP_054204475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,698,729 (-)NCBI
RefSeq Acc Id: XM_054348501   ⟹   XP_054204476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,715,394 (-)NCBI
RefSeq Acc Id: XM_054348502   ⟹   XP_054204477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,706,534 (-)NCBI
RefSeq Acc Id: XM_054348503   ⟹   XP_054204478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,629,168 (-)NCBI
RefSeq Acc Id: XM_054348504   ⟹   XP_054204479
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,373 - 11,717,542 (-)NCBI
RefSeq Acc Id: XM_054348505   ⟹   XP_054204480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,373 - 11,639,661 (-)NCBI
RefSeq Acc Id: XM_054348506   ⟹   XP_054204481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,373 - 11,715,275 (-)NCBI
RefSeq Acc Id: XM_054348507   ⟹   XP_054204482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0311,551,371 - 11,606,131 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121691 (Get FASTA)   NCBI Sequence Viewer  
  NP_001121692 (Get FASTA)   NCBI Sequence Viewer  
  NP_001121693 (Get FASTA)   NCBI Sequence Viewer  
  NP_001271319 (Get FASTA)   NCBI Sequence Viewer  
  NP_001271320 (Get FASTA)   NCBI Sequence Viewer  
  NP_055482 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532571 (Get FASTA)   NCBI Sequence Viewer  
  XP_024309603 (Get FASTA)   NCBI Sequence Viewer  
  XP_024309604 (Get FASTA)   NCBI Sequence Viewer  
  XP_024309605 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305215 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305216 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305217 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305218 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305219 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204474 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204475 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204476 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204477 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204478 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204479 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204480 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204481 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204482 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH01514 (Get FASTA)   NCBI Sequence Viewer  
  AAH03038 (Get FASTA)   NCBI Sequence Viewer  
  ABD48891 (Get FASTA)   NCBI Sequence Viewer  
  ABD48892 (Get FASTA)   NCBI Sequence Viewer  
  ABD48893 (Get FASTA)   NCBI Sequence Viewer  
  ABD48894 (Get FASTA)   NCBI Sequence Viewer  
  ABD48895 (Get FASTA)   NCBI Sequence Viewer  
  ABD48896 (Get FASTA)   NCBI Sequence Viewer  
  BAA09470 (Get FASTA)   NCBI Sequence Viewer  
  BAC85375 (Get FASTA)   NCBI Sequence Viewer  
  BAG62089 (Get FASTA)   NCBI Sequence Viewer  
  EAW64098 (Get FASTA)   NCBI Sequence Viewer  
  EAW64099 (Get FASTA)   NCBI Sequence Viewer  
  EAW64100 (Get FASTA)   NCBI Sequence Viewer  
  EAW64101 (Get FASTA)   NCBI Sequence Viewer  
  EAW64102 (Get FASTA)   NCBI Sequence Viewer  
  EAW64103 (Get FASTA)   NCBI Sequence Viewer  
  EAW64104 (Get FASTA)   NCBI Sequence Viewer  
  EAW64105 (Get FASTA)   NCBI Sequence Viewer  
  EAW64106 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000273038
  ENSP00000391554.1
  ENSP00000391932.2
  ENSP00000393100.1
  ENSP00000394123.1
  ENSP00000394439
  ENSP00000394439.1
  ENSP00000395557.1
  ENSP00000402878
  ENSP00000402878.2
  ENSP00000404251
  ENSP00000404624
  ENSP00000404624.1
  ENSP00000411670.2
  ENSP00000412923.1
  ENSP00000413030
  ENSP00000413030.2
  ENSP00000416615
  ENSP00000416615.2
  ENSP00000485472.1
GenBank Protein Q14135 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_055482   ⟸   NM_014667
- Peptide Label: isoform b
- UniProtKB: Q9BQ78 (UniProtKB/Swiss-Prot),   Q7L5V0 (UniProtKB/Swiss-Prot),   Q14135 (UniProtKB/Swiss-Prot),   J3KN68 (UniProtKB/Swiss-Prot),   G5E9M7 (UniProtKB/Swiss-Prot),   B4DTS7 (UniProtKB/Swiss-Prot),   A0A075B6E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001121691   ⟸   NM_001128219
- Peptide Label: isoform a
- Sequence:
RefSeq Acc Id: NP_001121692   ⟸   NM_001128220
- Peptide Label: isoform c
- UniProtKB: Q0H0I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001121693   ⟸   NM_001128221
- Peptide Label: isoform d
- UniProtKB: Q0H0I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271319   ⟸   NM_001284390
- Peptide Label: isoform e
- UniProtKB: A0A0A6YYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001271320   ⟸   NM_001284391
- Peptide Label: isoform f
- UniProtKB: G5E9M9 (UniProtKB/TrEMBL),   A0A024R2F0 (UniProtKB/TrEMBL),   A0A9K3Y712 (UniProtKB/TrEMBL),   Q0H0I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532571   ⟸   XM_011534269
- Peptide Label: isoform X4
- UniProtKB: G5E9M9 (UniProtKB/TrEMBL),   A0A024R2F0 (UniProtKB/TrEMBL),   A0A9K3Y712 (UniProtKB/TrEMBL),   Q0H0I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024309603   ⟸   XM_024453835
- Peptide Label: isoform X3
- UniProtKB: Q9BQ78 (UniProtKB/Swiss-Prot),   Q7L5V0 (UniProtKB/Swiss-Prot),   Q14135 (UniProtKB/Swiss-Prot),   J3KN68 (UniProtKB/Swiss-Prot),   G5E9M7 (UniProtKB/Swiss-Prot),   B4DTS7 (UniProtKB/Swiss-Prot),   A0A075B6E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024309605   ⟸   XM_024453837
- Peptide Label: isoform X7
- UniProtKB: E7EQU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024309604   ⟸   XM_024453836
- Peptide Label: isoform X3
- UniProtKB: Q9BQ78 (UniProtKB/Swiss-Prot),   Q7L5V0 (UniProtKB/Swiss-Prot),   Q14135 (UniProtKB/Swiss-Prot),   J3KN68 (UniProtKB/Swiss-Prot),   G5E9M7 (UniProtKB/Swiss-Prot),   B4DTS7 (UniProtKB/Swiss-Prot),   A0A075B6E4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000393100   ⟸   ENST00000437722
Ensembl Acc Id: ENSP00000402878   ⟸   ENST00000424529
Ensembl Acc Id: ENSP00000391554   ⟸   ENST00000424709
Ensembl Acc Id: ENSP00000413030   ⟸   ENST00000426568
Ensembl Acc Id: ENSP00000416615   ⟸   ENST00000451674
Ensembl Acc Id: ENSP00000485472   ⟸   ENST00000623028
Ensembl Acc Id: ENSP00000404624   ⟸   ENST00000413604
Ensembl Acc Id: ENSP00000492281   ⟸   ENST00000638314
Ensembl Acc Id: ENSP00000411670   ⟸   ENST00000417466
Ensembl Acc Id: ENSP00000391932   ⟸   ENST00000417206
Ensembl Acc Id: ENSP00000394439   ⟸   ENST00000418000
Ensembl Acc Id: ENSP00000395557   ⟸   ENST00000419541
Ensembl Acc Id: ENSP00000394123   ⟸   ENST00000458499
Ensembl Acc Id: ENSP00000273038   ⟸   ENST00000273038
Ensembl Acc Id: ENSP00000404251   ⟸   ENST00000430365
Ensembl Acc Id: ENSP00000412923   ⟸   ENST00000445411
RefSeq Acc Id: XP_047305215   ⟸   XM_047449259
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047305216   ⟸   XM_047449260
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047305217   ⟸   XM_047449261
- Peptide Label: isoform X4
- UniProtKB: A0A024R2F0 (UniProtKB/TrEMBL),   A0A9K3Y712 (UniProtKB/TrEMBL),   G5E9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047305218   ⟸   XM_047449262
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047305219   ⟸   XM_047449263
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054204474   ⟸   XM_054348499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054204476   ⟸   XM_054348501
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054204477   ⟸   XM_054348502
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054204475   ⟸   XM_054348500
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054204478   ⟸   XM_054348503
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054204482   ⟸   XM_054348507
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054204479   ⟸   XM_054348504
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054204481   ⟸   XM_054348506
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054204480   ⟸   XM_054348505
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14135-F1-model_v2 AlphaFold Q14135 1-290 view protein structure

Promoters
RGD ID:6863590
Promoter ID:EPDNEW_H4960
Type:initiation region
Name:VGLL4_1
Description:vestigial like family member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4961  EPDNEW_H4962  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,582,356 - 11,582,416EPDNEW
RGD ID:6801930
Promoter ID:HG_KWN:43750
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:NM_001128221,   OTTHUMT00000339146
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,584,961 - 11,586,012 (-)MPROMDB
RGD ID:6801927
Promoter ID:HG_KWN:43751
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000339140
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,598,421 - 11,598,921 (-)MPROMDB
RGD ID:6812445
Promoter ID:HG_ACW:52861
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:VGLL4.LAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,618,156 - 11,618,656 (-)MPROMDB
RGD ID:6801926
Promoter ID:HG_KWN:43752
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000339139
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,620,466 - 11,620,966 (-)MPROMDB
RGD ID:6801924
Promoter ID:HG_KWN:43757
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001128219
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,660,099 - 11,660,599 (-)MPROMDB
RGD ID:6863592
Promoter ID:EPDNEW_H4961
Type:initiation region
Name:VGLL4_3
Description:vestigial like family member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4960  EPDNEW_H4962  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,720,539 - 11,720,599EPDNEW
RGD ID:6863594
Promoter ID:EPDNEW_H4962
Type:initiation region
Name:VGLL4_2
Description:vestigial like family member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4960  EPDNEW_H4961  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38311,720,746 - 11,720,806EPDNEW
RGD ID:6801931
Promoter ID:HG_KWN:43759
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour,   HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000339231,   OTTHUMT00000339232,   OTTHUMT00000339233
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,735,906 - 11,736,502 (-)MPROMDB
RGD ID:6801929
Promoter ID:HG_KWN:43761
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_014667,   OTTHUMT00000339147,   OTTHUMT00000339230,   UC003BWG.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36311,736,844 - 11,737,344 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28966 AgrOrtholog
COSMIC VGLL4 COSMIC
Ensembl Genes ENSG00000144560 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000273038 ENTREZGENE
  ENST00000413604 ENTREZGENE
  ENST00000413604.5 UniProtKB/TrEMBL
  ENST00000417206.6 UniProtKB/TrEMBL
  ENST00000417466.5 UniProtKB/TrEMBL
  ENST00000418000 ENTREZGENE
  ENST00000418000.5 UniProtKB/TrEMBL
  ENST00000419541.4 UniProtKB/TrEMBL
  ENST00000424529 ENTREZGENE
  ENST00000424529.6 UniProtKB/Swiss-Prot
  ENST00000424709.5 UniProtKB/TrEMBL
  ENST00000426568 ENTREZGENE
  ENST00000426568.5 UniProtKB/TrEMBL
  ENST00000430365 ENTREZGENE
  ENST00000437722.1 UniProtKB/TrEMBL
  ENST00000445411.5 UniProtKB/TrEMBL
  ENST00000451674 ENTREZGENE
  ENST00000451674.6 UniProtKB/Swiss-Prot
  ENST00000458499.5 UniProtKB/TrEMBL
  ENST00000623028.1 UniProtKB/TrEMBL
GTEx ENSG00000144560 GTEx
HGNC ID HGNC:28966 ENTREZGENE
Human Proteome Map VGLL4 Human Proteome Map
InterPro TDU_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VGLL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9686 UniProtKB/Swiss-Prot
NCBI Gene 9686 ENTREZGENE
OMIM 618692 OMIM
PANTHER PTHR17604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam VGLL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA128394553 PharmGKB
SMART TDU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R2F0 ENTREZGENE
  A0A075B6E4 ENTREZGENE
  A0A096LP98_HUMAN UniProtKB/TrEMBL
  A0A0A6YYI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y712 ENTREZGENE
  B4DTS7 ENTREZGENE
  C9JBN2_HUMAN UniProtKB/TrEMBL
  C9JX59_HUMAN UniProtKB/TrEMBL
  E7EQU6 ENTREZGENE, UniProtKB/TrEMBL
  E7ERW0_HUMAN UniProtKB/TrEMBL
  E7EUJ2_HUMAN UniProtKB/TrEMBL
  E7EWF5_HUMAN UniProtKB/TrEMBL
  F8W708_HUMAN UniProtKB/TrEMBL
  F8WBN7_HUMAN UniProtKB/TrEMBL
  G5E9M7 ENTREZGENE
  G5E9M9 ENTREZGENE, UniProtKB/TrEMBL
  J3KN68 ENTREZGENE
  Q0H0I4_HUMAN UniProtKB/TrEMBL
  Q0H0I7 ENTREZGENE, UniProtKB/TrEMBL
  Q14135 ENTREZGENE
  Q7L5V0 ENTREZGENE
  Q9BQ78 ENTREZGENE
  VGLL4_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A0A024R2F0 UniProtKB/TrEMBL
  A0A075B6E4 UniProtKB/Swiss-Prot
  A0A9K3Y712 UniProtKB/TrEMBL
  B4DTS7 UniProtKB/Swiss-Prot
  G5E9M7 UniProtKB/Swiss-Prot
  J3KN68 UniProtKB/Swiss-Prot
  Q7L5V0 UniProtKB/Swiss-Prot
  Q9BQ78 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-01 VGLL4  vestigial like family member 4    vestigial-like family member 4  Symbol and/or name change 5135510 APPROVED
2014-03-05 VGLL4  vestigial-like family member 4    vestigial like 4 (Drosophila)  Symbol and/or name change 5135510 APPROVED