GWAS1126632_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1126632_H (body mass index QTL GWAS1126632 (human)) Homo sapiens

Symbol: GWAS1126632_H
Name: body mass index QTL GWAS1126632 (human)
RGD ID: 597030558
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 4.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38311,584,990 - 11,584,991RGD_MAPPER_PIPELINEGRCh38
GRCh37311,626,464 - 11,626,465RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126632_HHumanbody mass index (BMI)  IAGPrs17609108405850206 GWAS_CATALOGPMID:30239722

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126632_HHumanbody mass index  IAGPrs17609108405850206 GWAS_CATALOGPMID:30239722

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323223VGLL4vestigial like family member 431155606711721815Human


Peak: (rs17609108)
Human AssemblyChrPosition (strand)Source
GRCh38311,584,990 - 11,584,991RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
597030558GWAS1126632_Hbody mass index QTL GWAS1126632 (human)4e-10body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
597327201GWAS1423275_Hbody mass index QTL GWAS1423275 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
597175060GWAS1271134_Hbody mass index QTL GWAS1271134 (human)5e-10body mass indexbody mass index (BMI) (CMO:0000105)31158499011584991Human
597343909GWAS1439983_Hcolor vision disorder QTL GWAS1439983 (human)0.000002color vision disorder31158499011584991Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1126632_H GCST009004 Body mass index 806,834 European ancestry individuals T 0.8519 4E-10 9.398 rs17609108 0.0152 body mass index (EFO:0004340)
 PMID:30239722
GWAS1271134_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 5E-10 9.302 rs17609108 0.01484 body mass index (EFO:0004340)
 PMID:36376304
GWAS1423275_H GCST90301650 Body mass index 441,761 European ancestry individuals T NR 2E-9 8.699 rs17609108 0.0166813 body mass index (EFO:0004340)
 PMID:37280435
GWAS1439983_H GCST90301670 Color vision defects (Deutan-Protan) 31 Silk Road (founder/genetic isolate) cases, 483 Silk Road (founder/genetic isolate) controls C 0.844 0.000002 5.699 rs17609108 0.09724958 PMID:37359372
Database
Acc Id
Source(s)
GWAS Catalog GCST009004 GWAS Catalog

Note Type Note Reference