GWAS1126519_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1126519_H (body mass index QTL GWAS1126519 (human)) Homo sapiens

Symbol: GWAS1126519_H
Name: body mass index QTL GWAS1126519 (human)
RGD ID: 597030445
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38311,599,007 - 11,599,008RGD_MAPPER_PIPELINEGRCh38
GRCh37311,640,481 - 11,640,482RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126519_HHumanbody mass index (BMI)  IAGPrs17776719405850206 GWAS_CATALOGPMID:30595370

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126519_HHumanbody mass index  IAGPrs17776719405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323223VGLL4vestigial like family member 431155606711721815Human


Peak: (rs17776719)
Human AssemblyChrPosition (strand)Source
GRCh38311,599,007 - 11,599,008RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597173193GWAS1269267_Hbody mass index QTL GWAS1269267 (human)8e-12body mass indexbody mass index (BMI) (CMO:0000105)31159900711599008Human
596986753GWAS1106272_Hbody mass index QTL GWAS1106272 (human)2e-09body mass index31159900711599008Human
597030445GWAS1126519_Hbody mass index QTL GWAS1126519 (human)1e-08body mass indexbody mass index (BMI) (CMO:0000105)31159900711599008Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
597300054GWAS1396128_Hbody mass index QTL GWAS1396128 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)31159900711599008Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1126519_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 1E-8 8 rs17776719 N/A body mass index (EFO:0004340)
 PMID:30595370
GWAS1269267_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 8E-12 11.097 rs17776719 0.0149 body mass index (EFO:0004340)
 PMID:36581621
GWAS1396128_H GCST90446645 Body mass index 650,000 European ancestry individuals A 0.8541 2E-9 8.699 rs17776719 0.0158 body mass index (EFO:0004340)
 PMID:39375568
Database
Acc Id
Source(s)
GWAS Catalog GCST007039 GWAS Catalog

Note Type Note Reference