Sall1 (spalt like transcription factor 1) - Rat Genome Database

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Gene: Sall1 (spalt like transcription factor 1) Mus musculus
Analyze
Symbol: Sall1
Name: spalt like transcription factor 1
RGD ID: 1320516
MGI Page MGI
Description: Exhibits several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II transcription factor binding activity. Involved in several processes, including limb morphogenesis; nephron morphogenesis; and nervous system development. Localizes to NuRD complex and heterochromatin. Is expressed in several structures, including branchial arch; central nervous system; limb; metanephros; and sensory organ. Used to study Townes-Brocks syndrome. Human ortholog(s) of this gene implicated in Townes-Brocks syndrome and middle lobe syndrome. Orthologous to human SALL1 (spalt like transcription factor 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Msa; Msal-3; sal-3; sal-like 1; sal-like 1 (Drosophila); sal-like protein 1; zinc finger protein Spalt-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,753,867 - 89,770,790 (-)NCBIGRCm39mm39
GRCm39 Ensembl889,753,863 - 89,770,790 (-)Ensembl
GRCm38889,027,242 - 89,044,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)EnsemblGRCm38mm10GRCm38
MGSCv37891,551,141 - 91,568,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36891,918,348 - 91,932,544 (-)NCBImm8
Celera893,321,670 - 93,338,514 (-)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (ISO)
branching involved in ureteric bud morphogenesis  (IMP)
embryonic digestive tract development  (ISO)
embryonic digit morphogenesis  (IMP,ISO)
forelimb morphogenesis  (IGI)
gonad development  (ISO)
heart development  (ISO)
hindlimb morphogenesis  (IGI)
inductive cell-cell signaling  (IMP)
kidney development  (ISO)
kidney epithelium development  (IMP)
limb development  (ISO)
mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis  (IMP)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (IMP)
negative regulation of ectoderm development  (IMP)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (IMP)
negative regulation of mesoderm development  (IMP)
negative regulation of smoothened signaling pathway  (IGI)
negative regulation of transcription by RNA polymerase II  (IDA,IGI,IMP,ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO)
neural tube closure  (IGI)
neural tube development  (IGI)
olfactory bulb development  (IMP)
olfactory bulb interneuron differentiation  (IMP)
olfactory bulb mitral cell layer development  (ISO)
olfactory nerve development  (IMP)
pituitary gland development  (ISO)
positive regulation of branching involved in ureteric bud morphogenesis  (IMP)
positive regulation of neuron differentiation  (IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of Wnt signaling pathway  (ISO)
regulation of neural precursor cell proliferation  (IMP)
regulation of transcription by RNA polymerase II  (IBA)
ureteric bud development  (IMP)
ureteric bud invasion  (IMP)
ventricular septum development  (IGI,IMP)

Cellular Component
chromocenter  (ISO)
cytoplasm  (ISO)
heterochromatin  (IDA,ISO)
nucleus  (IBA,IC,IDA,ISO)
NuRD complex  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anus morphology  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal kidney cortex morphology  (IAGP)
abnormal kidney development  (IAGP)
abnormal kidney mesenchyme morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal metanephric mesenchyme morphology  (IAGP)
abnormal olfactory bulb morphology  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal rectum morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal ureteric bud invasion  (IAGP)
abnormal ureteric bud morphology  (IAGP)
absent carpal bone  (IAGP)
absent kidney  (IAGP)
absent triquetrum  (IAGP)
absent ureter  (IAGP)
anal atresia  (IAGP)
anal stenosis  (IAGP)
conductive hearing loss  (IAGP)
deafness  (IAGP)
decreased cell proliferation  (IAGP)
dilated renal tubules  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
exencephaly  (IAGP)
fused metacarpal bones  (IAGP)
impaired branching involved in ureteric bud morphogenesis  (IAGP)
increased metanephric mesenchyme apoptosis  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
intestinal obstruction  (IAGP)
kidney cysts  (IAGP)
metacarpal bone hypoplasia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
oligodactyly  (IAGP)
open neural tube  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
renal glomerulus atrophy  (IAGP)
renal hypoplasia  (IAGP)
renal tubular necrosis  (IAGP)
single kidney  (IAGP)
small kidney  (IAGP)
syndactyly  (IAGP)
ventricular septal defect  (IAGP)
References

Additional References at PubMed
PMID:7671812   PMID:10965108   PMID:11231076   PMID:11404093   PMID:11688560   PMID:11836251   PMID:12466851   PMID:12477932   PMID:12482961   PMID:12520002   PMID:12590351   PMID:12783782  
PMID:12915476   PMID:14613977   PMID:15158448   PMID:15172686   PMID:15385616   PMID:15618518   PMID:16221172   PMID:16319116   PMID:16396903   PMID:16442091   PMID:16602821   PMID:16670092  
PMID:16707490   PMID:16790473   PMID:16839447   PMID:16916509   PMID:16919269   PMID:17036046   PMID:17060609   PMID:17093407   PMID:17295837   PMID:17300925   PMID:17537792   PMID:17967808  
PMID:18024993   PMID:18260139   PMID:18287559   PMID:18470945   PMID:18787044   PMID:18799693   PMID:18818376   PMID:19168674   PMID:19350679   PMID:19476507   PMID:19483677   PMID:19591821  
PMID:19942929   PMID:20053786   PMID:20127799   PMID:20159597   PMID:20362541   PMID:20362542   PMID:20412781   PMID:20439720   PMID:20702564   PMID:20843830   PMID:21062744   PMID:21267068  
PMID:21345181   PMID:21423180   PMID:21613322   PMID:21677750   PMID:21731673   PMID:21873635   PMID:21888672   PMID:21934330   PMID:22083510   PMID:22228756   PMID:22507837   PMID:23201013  
PMID:23332759   PMID:23555292   PMID:23825698   PMID:23892456   PMID:24218595   PMID:24370450   PMID:24398455   PMID:24440154   PMID:24500693   PMID:24550112   PMID:24742196   PMID:24744442  
PMID:25142465   PMID:25168025   PMID:25362053   PMID:25617721   PMID:25989023   PMID:26116661   PMID:26238476   PMID:26311113   PMID:26511275   PMID:26658320   PMID:26685160   PMID:26876450  
PMID:27076431   PMID:27210758   PMID:27459098   PMID:27471257   PMID:27480037   PMID:27654891   PMID:27776109   PMID:27820600   PMID:27974206   PMID:28759006   PMID:28760814   PMID:29109083  
PMID:29420474   PMID:29449451   PMID:29712641   PMID:29721946   PMID:29768210   PMID:29768498   PMID:29771971   PMID:29891551   PMID:30377232   PMID:30595499   PMID:30718617   PMID:30886905  
PMID:30905739   PMID:30929925   PMID:30943054   PMID:31061494   PMID:31077711   PMID:31142573   PMID:31813798   PMID:31862977   PMID:32259484   PMID:32284604   PMID:32439942   PMID:32470397  
PMID:32492250   PMID:32665241   PMID:33333014  


Genomics

Comparative Map Data
Sall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,753,867 - 89,770,790 (-)NCBIGRCm39mm39
GRCm39 Ensembl889,753,863 - 89,770,790 (-)Ensembl
GRCm38889,027,242 - 89,044,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)EnsemblGRCm38mm10GRCm38
MGSCv37891,551,141 - 91,568,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36891,918,348 - 91,932,544 (-)NCBImm8
Celera893,321,670 - 93,338,514 (-)NCBICelera
Cytogenetic Map8C3NCBI
SALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1651,135,975 - 51,151,367 (-)EnsemblGRCh38hg38GRCh38
GRCh381651,135,982 - 51,151,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371651,169,893 - 51,185,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,727,387 - 49,742,684 (-)NCBINCBI36hg18NCBI36
Build 341649,727,829 - 49,742,653NCBI
Celera1635,686,254 - 35,701,557 (-)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1637,057,983 - 37,073,288 (-)NCBIHuRef
CHM1_11652,577,216 - 52,592,517 (-)NCBICHM1_1
Sall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21918,005,782 - 18,022,705 (+)NCBI
Rnor_6.0 Ensembl1923,389,375 - 23,405,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01923,387,737 - 23,405,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01934,377,838 - 34,395,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,277,337 - 19,293,298 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11919,283,733 - 19,298,618 (+)NCBI
Celera1917,896,753 - 17,911,869 (+)NCBICelera
Cytogenetic Map19p11NCBI
Sall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554339,144,748 - 9,161,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554339,146,074 - 9,161,171 (-)NCBIChiLan1.0ChiLan1.0
SALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11650,274,081 - 50,280,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1650,274,090 - 50,284,819 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01631,396,399 - 31,412,753 (-)NCBIMhudiblu_PPA_v0panPan3
SALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,242,742 - 64,260,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,243,987 - 64,259,521 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha260,816,127 - 60,833,504 (+)NCBI
ROS_Cfam_1.0264,787,008 - 64,804,401 (+)NCBI
UMICH_Zoey_3.1261,612,959 - 61,630,321 (+)NCBI
UNSW_CanFamBas_1.0262,631,291 - 62,648,633 (+)NCBI
UU_Cfam_GSD_1.0263,519,257 - 63,536,638 (+)NCBI
Sall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBI
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl633,732,016 - 33,748,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1633,731,666 - 33,748,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2630,222,502 - 30,239,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,928,711 - 36,944,158 (-)NCBI
ChlSab1.1 Ensembl536,927,990 - 36,943,630 (-)Ensembl
Sall1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBI

Position Markers
UniSTS:235962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38889,028,354 - 89,028,436UniSTSGRCm38
MGSCv37891,552,253 - 91,552,335UniSTSGRCm37
Celera893,322,782 - 93,322,864UniSTS
Cytogenetic Map8DUniSTS
PMC140661P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38889,028,096 - 89,028,383UniSTSGRCm38
MGSCv37891,551,995 - 91,552,282UniSTSGRCm37
Celera893,322,524 - 93,322,811UniSTS
Cytogenetic Map8DUniSTS
Sall1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8DUniSTS
cM Map8 UniSTS
RH47686  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381851,084,174 - 51,084,311UniSTSGRCm38
GRCm38889,027,320 - 89,027,459UniSTSGRCm38
MGSCv371851,243,828 - 51,243,965UniSTSGRCm37
MGSCv37891,551,219 - 91,551,358UniSTSGRCm37
Celera1852,402,615 - 52,402,752UniSTS
Celera893,321,748 - 93,321,887UniSTS
Cytogenetic Map8DUniSTS
AF021116  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38889,032,952 - 89,033,113UniSTSGRCm38
MGSCv37891,556,851 - 91,557,012UniSTSGRCm37
Celera893,327,380 - 93,327,541UniSTS
Cytogenetic Map8DUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined885716921119717069Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined885716921119717069Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined885716921119717069Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889000000130800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:262
Count of miRNA genes:216
Interacting mature miRNAs:233
Transcripts:ENSMUST00000034090
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034090   ⟹   ENSMUSP00000034090
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)Ensembl
RefSeq Acc Id: NM_001371069   ⟹   NP_001357998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39889,753,870 - 89,770,140 (-)NCBI
GRCm38889,027,242 - 89,043,512 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001371070   ⟹   NP_001357999
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39889,753,870 - 89,769,490 (-)NCBI
GRCm38889,027,242 - 89,042,862 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021390   ⟹   NP_067365
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39889,753,870 - 89,770,790 (-)NCBI
GRCm38889,027,242 - 89,044,162 (-)NCBI
MGSCv37891,551,141 - 91,568,061 (-)RGD
Celera893,321,670 - 93,338,514 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036154203   ⟹   XP_036010096
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39889,753,867 - 89,768,267 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_067365   ⟸   NM_021390
- UniProtKB: Q6P5E3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001357998   ⟸   NM_001371069
RefSeq Acc Id: NP_001357999   ⟸   NM_001371070
RefSeq Acc Id: ENSMUSP00000034090   ⟸   ENSMUST00000034090
RefSeq Acc Id: XP_036010096   ⟸   XM_036154203
- Peptide Label: isoform X1
Protein Domains
C2H2-type

Promoters
RGD ID:8667833
Promoter ID:EPDNEW_M11947
Type:multiple initiation site
Name:Sall1_2
Description:Mus musculus spalt like transcription factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11948  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38889,042,456 - 89,042,516EPDNEW
RGD ID:8667835
Promoter ID:EPDNEW_M11948
Type:initiation region
Name:Sall1_1
Description:Mus musculus spalt like transcription factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11947  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38889,044,183 - 89,044,243EPDNEW
RGD ID:6843689
Promoter ID:MM_KWN:55223
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:UC009MRZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36891,566,386 - 91,566,886 (-)MPROMDB
RGD ID:6843688
Promoter ID:MM_KWN:55224
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver
Transcripts:NM_021390
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36891,567,576 - 91,569,052 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889585 AgrOrtholog
Ensembl Genes ENSMUSG00000031665 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034090 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034090 ENTREZGENE, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1889585 ENTREZGENE
NCBI Gene 58198 ENTREZGENE
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sall1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q6P5E3 ENTREZGENE, UniProtKB/TrEMBL
  Q9ER74 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q920R5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Sall1  spalt like transcription factor 1    sal-like 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED