Sall1 (spalt like transcription factor 1) - Rat Genome Database

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Pathways
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Gene: Sall1 (spalt like transcription factor 1) Heterocephalus glaber
Analyze
Symbol: Sall1
Name: spalt like transcription factor 1
RGD ID: 18930663
Description: ENCODES a protein that exhibits beta-catenin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); embryonic digestive tract development (ortholog); ASSOCIATED WITH CAKUT (ortholog); chronic kidney disease (ortholog); Congenital Abnormalities (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sal-like 1; Sal-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247575,572,528 - 5,587,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (ISO)
branching involved in ureteric bud morphogenesis  (ISO)
embryonic digestive tract development  (ISO)
embryonic digit morphogenesis  (ISO)
forelimb morphogenesis  (ISO)
GABAergic neuron differentiation  (ISO)
gonad development  (ISO)
heart development  (ISO)
hindlimb morphogenesis  (ISO)
inductive cell-cell signaling  (ISO)
kidney development  (ISO)
kidney epithelium development  (ISO)
limb development  (ISO)
mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis  (ISO)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
negative regulation of DNA-templated transcription  (ISO)
negative regulation of ectoderm development  (ISO)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
negative regulation of mesoderm development  (ISO)
negative regulation of smoothened signaling pathway  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neural tube closure  (ISO)
neural tube development  (ISO)
neuron differentiation  (ISO)
olfactory bulb development  (ISO)
olfactory bulb interneuron differentiation  (ISO)
olfactory bulb mitral cell layer development  (ISO)
olfactory nerve development  (ISO)
pituitary gland development  (ISO)
positive regulation of branching involved in ureteric bud morphogenesis  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of Wnt signaling pathway  (ISO)
regulation of neuroblast proliferation  (ISO)
regulation of transcription by RNA polymerase II  (IEA)
smoothened signaling pathway  (ISO)
transcription by RNA polymerase II  (ISO)
ureteric bud development  (ISO)
ureteric bud invasion  (ISO)
ventricular septum development  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247575,572,528 - 5,587,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381651,135,982 - 51,152,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1651,135,982 - 51,152,334 (-)EnsemblGRCh38hg38GRCh38
GRCh371651,169,893 - 51,185,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,727,387 - 49,742,684 (-)NCBINCBI36Build 36hg18NCBI36
Build 341649,727,829 - 49,742,653NCBI
Celera1635,686,254 - 35,701,557 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1637,057,983 - 37,073,288 (-)NCBIHuRef
CHM1_11652,577,216 - 52,592,517 (-)NCBICHM1_1
T2T-CHM13v2.01656,933,839 - 56,950,190 (-)NCBIT2T-CHM13v2.0
Sall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,753,867 - 89,770,790 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl889,753,863 - 89,770,790 (-)EnsemblGRCm39 Ensembl
GRCm38889,027,242 - 89,044,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)EnsemblGRCm38mm10GRCm38
MGSCv37891,551,141 - 91,568,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,918,348 - 91,932,544 (-)NCBIMGSCv36mm8
Celera893,321,670 - 93,338,514 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.51NCBI
Sall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81934,179,316 - 34,196,278 (+)NCBIGRCr8
mRatBN7.21918,005,782 - 18,022,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,007,503 - 18,022,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1919,687,226 - 19,702,424 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01924,881,820 - 24,897,018 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01927,838,998 - 27,854,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01923,387,737 - 23,405,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1923,389,375 - 23,405,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01934,377,838 - 34,395,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,277,337 - 19,293,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11919,283,733 - 19,298,618 (+)NCBI
Celera1917,896,753 - 17,911,869 (+)NCBICelera
Cytogenetic Map19p11NCBI
Sall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554339,144,748 - 9,161,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554339,146,074 - 9,161,171 (-)NCBIChiLan1.0ChiLan1.0
SALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21860,591,098 - 60,605,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11666,506,188 - 66,522,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01631,396,399 - 31,412,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11650,274,081 - 50,280,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1650,274,090 - 50,284,819 (-)Ensemblpanpan1.1panPan2
SALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,242,742 - 64,260,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,243,987 - 64,259,521 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha260,816,127 - 60,833,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0264,787,008 - 64,804,401 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl264,787,375 - 64,804,352 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,612,959 - 61,630,321 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,631,291 - 62,648,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0263,519,257 - 63,536,638 (+)NCBIUU_Cfam_GSD_1.0
Sall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364754,106,084 - 4,121,413 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl633,732,025 - 33,748,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1633,731,666 - 33,748,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2630,222,502 - 30,239,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,928,711 - 36,944,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl536,927,990 - 36,943,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604739,548,229 - 39,564,556 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005946   ⟹   ENSHGLP00000005872
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247575,572,528 - 5,587,617 (+)Ensembl
RefSeq Acc Id: XM_004847932   ⟹   XP_004847989
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBI
RefSeq Acc Id: XM_021260916   ⟹   XP_021116575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247575,579,929 - 5,587,623 (+)NCBI
RefSeq Acc Id: XM_021260917   ⟹   XP_021116576
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247575,573,400 - 5,587,623 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847989 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116575 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116576 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15614 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005872
  ENSHGLP00100028966
Reference Protein Sequences
RefSeq Acc Id: XP_004847989   ⟸   XM_004847932
- Peptide Label: isoform X1
- UniProtKB: G5C253 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116576   ⟸   XM_021260917
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021116575   ⟸   XM_021260916
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000005872   ⟸   ENSHGLT00000005946


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004288 Ensembl, ENTREZGENE
  ENSHGLG00100017496 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005946 ENTREZGENE
  ENSHGLT00100045730 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101706985 UniProtKB/TrEMBL
NCBI Gene Sall1 ENTREZGENE
PANTHER SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt G5C253 ENTREZGENE, UniProtKB/TrEMBL