Sall1 (spalt like transcription factor 1) - Rat Genome Database

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Gene: Sall1 (spalt like transcription factor 1) Ictidomys tridecemlineatus
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Symbol: Sall1
Name: spalt like transcription factor 1
RGD ID: 12649604
Description: ENCODES a protein that exhibits beta-catenin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); embryonic digestive tract development (ortholog); ASSOCIATED WITH CAKUT (ortholog); Congenital Abnormalities (ortholog); Congenital Limb Deformities (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sal-like 1; sal-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBI
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (ISO)
branching involved in ureteric bud morphogenesis  (ISO)
embryonic digestive tract development  (ISO)
embryonic digit morphogenesis  (ISO)
forelimb morphogenesis  (ISO)
gonad development  (ISO)
heart development  (ISO)
hindlimb morphogenesis  (ISO)
inductive cell-cell signaling  (ISO)
kidney development  (ISO)
kidney epithelium development  (ISO)
limb development  (ISO)
mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis  (ISO)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
negative regulation of ectoderm development  (ISO)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (ISO)
negative regulation of mesoderm development  (ISO)
negative regulation of smoothened signaling pathway  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of transcription, DNA-templated  (ISO)
neural tube closure  (ISO)
neural tube development  (ISO)
olfactory bulb development  (ISO)
olfactory bulb interneuron differentiation  (ISO)
olfactory bulb mitral cell layer development  (ISO)
olfactory nerve development  (ISO)
pituitary gland development  (ISO)
positive regulation of branching involved in ureteric bud morphogenesis  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of Wnt signaling pathway  (ISO)
regulation of neural precursor cell proliferation  (ISO)
ureteric bud development  (ISO)
ureteric bud invasion  (ISO)
ventricular septum development  (ISO)

Cellular Component

References

Genomics

Comparative Map Data
Sall1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBI
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1651,135,975 - 51,151,367 (-)EnsemblGRCh38hg38GRCh38
GRCh381651,135,982 - 51,151,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371651,169,893 - 51,185,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,727,387 - 49,742,684 (-)NCBINCBI36hg18NCBI36
Build 341649,727,829 - 49,742,653NCBI
Celera1635,686,254 - 35,701,557 (-)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1637,057,983 - 37,073,288 (-)NCBIHuRef
CHM1_11652,577,216 - 52,592,517 (-)NCBICHM1_1
Sall1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,753,867 - 89,770,790 (-)NCBIGRCm39mm39
GRCm39 Ensembl889,753,863 - 89,770,790 (-)Ensembl
GRCm38889,027,242 - 89,044,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl889,027,235 - 89,044,162 (-)EnsemblGRCm38mm10GRCm38
MGSCv37891,551,141 - 91,568,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36891,918,348 - 91,932,544 (-)NCBImm8
Celera893,321,670 - 93,338,514 (-)NCBICelera
Cytogenetic Map8C3NCBI
Sall1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21918,005,782 - 18,022,705 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1918,007,503 - 18,022,705 (+)Ensembl
Rnor_6.01923,387,737 - 23,405,025 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1923,389,375 - 23,405,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01934,377,838 - 34,395,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,277,337 - 19,293,298 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11919,283,733 - 19,298,618 (+)NCBI
Celera1917,896,753 - 17,911,869 (+)NCBICelera
Cytogenetic Map19p11NCBI
Sall1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554339,144,748 - 9,161,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554339,146,074 - 9,161,171 (-)NCBIChiLan1.0ChiLan1.0
SALL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11650,274,081 - 50,280,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1650,274,090 - 50,284,819 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01631,396,399 - 31,412,753 (-)NCBIMhudiblu_PPA_v0panPan3
SALL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,242,742 - 64,260,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,243,987 - 64,259,521 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha260,816,127 - 60,833,504 (+)NCBI
ROS_Cfam_1.0264,787,008 - 64,804,401 (+)NCBI
UMICH_Zoey_3.1261,612,959 - 61,630,321 (+)NCBI
UNSW_CanFamBas_1.0262,631,291 - 62,648,633 (+)NCBI
UU_Cfam_GSD_1.0263,519,257 - 63,536,638 (+)NCBI
SALL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl633,732,016 - 33,748,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1633,731,666 - 33,748,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2630,222,502 - 30,239,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,928,711 - 36,944,158 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl536,927,990 - 36,943,630 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604739,548,229 - 39,564,556 (+)NCBIVero_WHO_p1.0
Sall1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247575,572,510 - 5,587,623 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005318173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005318173   ⟹   XP_005318230
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934955,465,986 - 55,483,143 (+)NCBI
SpeTri2.0NW_0049364754,106,663 - 4,121,356 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005318230 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3257304 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005318230   ⟸   XM_005318173
- UniProtKB: I3NEV7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020885 ENTREZGENE
Ensembl Protein ENSSTOP00000022904 ENTREZGENE
NCBI Gene Sall1 ENTREZGENE
UniProt I3NEV7 ENTREZGENE