Suv39h2 (suppressor of variegation 3-9 2) - Rat Genome Database

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Gene: Suv39h2 (suppressor of variegation 3-9 2) Mus musculus
Analyze
Symbol: Suv39h2
Name: suppressor of variegation 3-9 2
RGD ID: 1315885
MGI Page MGI
Description: Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; chromatin binding activity; and histone H3K9me2 methyltransferase activity. Involved in circadian rhythm; male meiotic nuclear division; and negative regulation of macromolecule biosynthetic process. Located in heterochromatin and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and limb. Orthologous to human SUV39H2 (SUV39H2 histone lysine methyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930507K23Rik; AA536750; D030054H19Rik; D2Ertd544; D2Ertd544e; H3-K9-HMTase 2; histone H3-K9 methyltransferase 2; histone-lysine N-methyltransferase SUV39H2; KMT1B; su(var)3-9 homolog 2; suppressor of variegation 3-9 homolog 2; suppressor of variegation 3-9 homolog 2 (Drosophila); Suv39h histone methyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,456,852 - 3,476,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,456,852 - 3,476,068 (-)EnsemblGRCm39 Ensembl
GRCm3823,455,815 - 3,474,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,455,815 - 3,475,031 (-)EnsemblGRCm38mm10GRCm38
MGSCv3723,373,087 - 3,392,258 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,373,092 - 3,392,235 (-)NCBIMGSCv36mm8
Celera23,406,803 - 3,425,973 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
FR900359  (ISO)
glycerol 2-phosphate  (ISO)
hydrogen peroxide  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nitric oxide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
succimer  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
2. Targeting protein lysine methylation and demethylation in cancers. He Y, etal., Acta Biochim Biophys Sin (Shanghai). 2012 Jan;44(1):70-9. doi: 10.1093/abbs/gmr109.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Isolation and characterization of Suv39h2, a second histone H3 methyltransferase gene that displays testis-specific expression. O'Carroll D, etal., Mol Cell Biol 2000 Dec;20(24):9423-33.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:10949293   PMID:11042159   PMID:11076861   PMID:11701123   PMID:12398767   PMID:12477932   PMID:12520002   PMID:14681479   PMID:14690609   PMID:14690610  
PMID:14702045   PMID:15107829   PMID:15788566   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16818776   PMID:18022353   PMID:18157120   PMID:18311137   PMID:18799693   PMID:19129513  
PMID:20573702   PMID:20588255   PMID:21267068   PMID:21402781   PMID:21464229   PMID:21677750   PMID:21731673   PMID:21873635   PMID:21896631   PMID:23333759   PMID:23451023   PMID:24183668  
PMID:24413057   PMID:24981170   PMID:27426629   PMID:28232186   PMID:28323616   PMID:28361889   PMID:28760199   PMID:28963472   PMID:30606806   PMID:32305044   PMID:33634103   PMID:34262135  
PMID:34368113   PMID:38719473  


Genomics

Comparative Map Data
Suv39h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,456,852 - 3,476,085 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,456,852 - 3,476,068 (-)EnsemblGRCm39 Ensembl
GRCm3823,455,815 - 3,474,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,455,815 - 3,475,031 (-)EnsemblGRCm38mm10GRCm38
MGSCv3723,373,087 - 3,392,258 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,373,092 - 3,392,235 (-)NCBIMGSCv36mm8
Celera23,406,803 - 3,425,973 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.95NCBI
SUV39H2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381014,878,866 - 14,904,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1014,878,820 - 14,904,315 (+)EnsemblGRCh38hg38GRCh38
GRCh371014,920,865 - 14,946,314 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361014,960,905 - 14,986,320 (+)NCBINCBI36Build 36hg18NCBI36
Build 341014,960,904 - 14,986,308NCBI
Celera1014,848,822 - 14,874,354 (+)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1014,831,341 - 14,856,796 (+)NCBIHuRef
CHM1_11014,921,216 - 14,946,434 (+)NCBICHM1_1
T2T-CHM13v2.01014,892,831 - 14,918,279 (+)NCBIT2T-CHM13v2.0
Suv39h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,665,467 - 79,684,492 (+)NCBIGRCr8
mRatBN7.21774,756,290 - 74,775,332 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,756,306 - 74,775,332 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1778,209,501 - 78,228,542 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,057,802 - 82,076,828 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,092,937 - 76,111,981 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,762,897 - 78,782,016 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,762,991 - 78,782,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,406,940 - 80,425,965 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,875,954 - 85,894,979 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11785,886,805 - 85,903,145 (+)NCBI
Celera1774,141,962 - 74,160,987 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Suv39h2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,503,197 - 19,528,027 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,503,197 - 19,526,454 (-)NCBIChiLan1.0ChiLan1.0
SUV39H2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,404,606 - 27,429,895 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,409,940 - 27,435,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01014,882,491 - 14,907,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,211,360 - 15,236,272 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,211,360 - 15,237,097 (+)Ensemblpanpan1.1panPan2
SUV39H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,715,677 - 21,749,732 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,728,964 - 21,749,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,828,959 - 18,863,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,017,081 - 22,051,385 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,029,347 - 22,051,353 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,228,679 - 19,251,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0220,052,418 - 20,086,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,679,024 - 20,713,098 (-)NCBIUU_Cfam_GSD_1.0
Suv39h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093446,893,110 - 6,922,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366131,443,629 - 1,467,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366131,443,663 - 1,467,776 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUV39H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,873,126 - 46,900,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,874,606 - 46,900,058 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,595,641 - 51,633,086 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUV39H2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,900,503 - 14,924,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl914,900,945 - 14,923,447 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,439,417 - 20,464,204 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Suv39h2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805597,406 - 618,969 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624805594,986 - 619,115 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2038
Count of miRNA genes:616
Interacting mature miRNAs:780
Transcripts:ENSMUST00000027956, ENSMUST00000060618, ENSMUST00000100458, ENSMUST00000127540
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse

Markers in Region
AU022550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,962 - 3,456,059UniSTSGRCm38
MGSCv3723,373,234 - 3,373,331UniSTSGRCm37
Celera23,406,950 - 3,407,047UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map21.0UniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH248.58UniSTS
PMC102198P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,464,451 - 3,464,663UniSTSGRCm38
MGSCv3723,381,723 - 3,381,935UniSTSGRCm37
Celera23,415,439 - 3,415,651UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
AA536750  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,457,627 - 3,457,752UniSTSGRCm38
MGSCv3723,374,899 - 3,375,024UniSTSGRCm37
Celera23,408,615 - 3,408,740UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH248.56UniSTS
RH124451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,457,790 - 3,457,876UniSTSGRCm38
MGSCv3723,375,062 - 3,375,148UniSTSGRCm37
Celera23,408,778 - 3,408,864UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
UniSTS:234318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,869 - 3,456,068UniSTSGRCm38
MGSCv3723,373,141 - 3,373,340UniSTSGRCm37
Celera23,406,857 - 3,407,056UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
AI661365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,022 - 3,455,138UniSTSGRCm38
MGSCv3723,372,294 - 3,372,410UniSTSGRCm37
Celera23,406,010 - 3,406,126UniSTS
Cytogenetic Map2AUniSTS
Cytogenetic Map2A1UniSTS
cM Map22.5UniSTS
Whitehead/MRC_RH264.31UniSTS
Suv39h2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
ksks283  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,464,300 - 3,464,624UniSTSGRCm38
MGSCv3723,381,572 - 3,381,896UniSTSGRCm37
Celera23,415,288 - 3,415,612UniSTS
Cytogenetic Map2AUniSTS
cM Map22.5UniSTS
AU022550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3823,455,863 - 3,456,104UniSTSGRCm38
MGSCv3723,373,135 - 3,373,376UniSTSGRCm37
Celera23,406,851 - 3,407,092UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map2AUniSTS
cM Map21.0UniSTS
Whitehead/MRC_RH247.57UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027956   ⟹   ENSMUSP00000027956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,456,852 - 3,476,068 (-)Ensembl
GRCm38.p6 Ensembl23,455,815 - 3,475,031 (-)Ensembl
Ensembl Acc Id: ENSMUST00000060618   ⟹   ENSMUSP00000054169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,458,617 - 3,475,997 (-)Ensembl
GRCm38.p6 Ensembl23,457,580 - 3,474,960 (-)Ensembl
Ensembl Acc Id: ENSMUST00000100458   ⟹   ENSMUSP00000098026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,458,618 - 3,475,456 (-)Ensembl
GRCm38.p6 Ensembl23,457,581 - 3,474,419 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127540   ⟹   ENSMUSP00000125485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl23,458,640 - 3,476,006 (-)Ensembl
GRCm38.p6 Ensembl23,457,603 - 3,474,969 (-)Ensembl
RefSeq Acc Id: NM_022724   ⟹   NP_073561
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,456,852 - 3,476,023 (-)NCBI
GRCm3823,455,815 - 3,474,986 (-)ENTREZGENE
MGSCv3723,373,087 - 3,392,258 (-)RGD
Celera23,406,803 - 3,425,973 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_027509
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,456,852 - 3,476,023 (-)NCBI
GRCm3823,455,815 - 3,474,986 (-)ENTREZGENE
MGSCv3723,373,087 - 3,392,258 (-)RGD
Celera23,406,803 - 3,425,973 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036162445   ⟹   XP_036018338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3923,458,617 - 3,476,085 (-)NCBI
Sequence:
RefSeq Acc Id: NP_073561   ⟸   NM_022724
- UniProtKB: Q9JLP7 (UniProtKB/Swiss-Prot),   Q9CUK3 (UniProtKB/Swiss-Prot),   Q8BNK2 (UniProtKB/Swiss-Prot),   Q9EQQ0 (UniProtKB/Swiss-Prot),   A0A0R4J074 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027956   ⟸   ENSMUST00000027956
Ensembl Acc Id: ENSMUSP00000125485   ⟸   ENSMUST00000127540
Ensembl Acc Id: ENSMUSP00000098026   ⟸   ENSMUST00000100458
Ensembl Acc Id: ENSMUSP00000054169   ⟸   ENSMUST00000060618
RefSeq Acc Id: XP_036018338   ⟸   XM_036162445
- Peptide Label: isoform X1
Protein Domains
Chromo   Post-SET   Pre-SET   SET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQQ0-F1-model_v2 AlphaFold Q9EQQ0 1-477 view protein structure

Promoters
RGD ID:6832888
Promoter ID:MM_KWN:27516
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000060618,   ENSMUST00000100458,   ENSMUST00000115062,   NR_027509,   OTTMUST00000025237,   OTTMUST00000025241
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3623,392,054 - 3,392,554 (-)MPROMDB
RGD ID:6876222
Promoter ID:EPDNEW_M1562
Type:multiple initiation site
Name:Suv39h2_1
Description:Mus musculus suppressor of variegation 3-9 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3823,474,969 - 3,475,029EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890396 AgrOrtholog
Ensembl Genes ENSMUSG00000026646 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027956 ENTREZGENE
  ENSMUST00000027956.9 UniProtKB/TrEMBL
  ENSMUST00000060618.13 UniProtKB/TrEMBL
  ENSMUST00000100458.4 UniProtKB/TrEMBL
  ENSMUST00000127540.2 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H3K9_Histone-Lys_N-MTase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H3-K9_MeTrfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Post-SET_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pre-SET_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SET_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:64707 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890396 ENTREZGENE
NCBI Gene 64707 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pre-SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Suv39h2 PhenoGen
PIRSF SUV39_SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POST_SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRE_SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_MT43_SUVAR39_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PostSET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PreSET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J074 ENTREZGENE, UniProtKB/TrEMBL
  E0CZC9_MOUSE UniProtKB/TrEMBL
  F6WB49_MOUSE UniProtKB/TrEMBL
  Q3TNH3_MOUSE UniProtKB/TrEMBL
  Q8BNK2 ENTREZGENE
  Q8K085_MOUSE UniProtKB/TrEMBL
  Q9CUK3 ENTREZGENE
  Q9EQQ0 ENTREZGENE
  Q9JLP7 ENTREZGENE
  SUV92_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BNK2 UniProtKB/Swiss-Prot
  Q9CUK3 UniProtKB/Swiss-Prot
  Q9JLP7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Suv39h2  suppressor of variegation 3-9 2    suppressor of variegation 3-9 homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED