Suv39h2 (SUV39H2 histone lysine methyltransferase)

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Gene: Suv39h2 (SUV39H2 histone lysine methyltransferase) Ictidomys tridecemlineatus

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Symbol:

Suv39h2

Name:

SUV39H2 histone lysine methyltransferase

RGD ID:

12692541

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); histone H3 methyltransferase activity (ortholog); histone H3K9me2 methyltransferase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); circadian rhythm (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH histiocytic sarcoma (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); Parakeratosis (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

histone-lysine N-methyltransferase SUV39H2; suppressor of variegation 3-9 homolog 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	6,893,110 - 6,922,105 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	1,443,629 - 1,467,229 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	1,443,663 - 1,467,776 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

histiocytic sarcoma (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

Parakeratosis (ISO)

severe combined immunodeficiency with sensitivity to ionizing radiation (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cellular response to hypoxia (IEA,ISO)

chromatin organization (IEA)

chromatin remodeling (IEA)

circadian rhythm (ISO)

epigenetic programming in the zygotic pronuclei (IEA)

male meiotic nuclear division (ISO)

methylation (IEA)

negative regulation of DNA-templated transcription (IEA)

negative regulation of gene expression, epigenetic (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

chromatin (IEA)

chromosome (IEA)

chromosome, centromeric region (IEA)

heterochromatin (ISO)

nucleus (IEA,ISO)

Molecular Function

chromatin binding (ISO)

histone H3 methyltransferase activity (ISO)

histone H3K9 methyltransferase activity (IEA)

histone H3K9 trimethyltransferase activity (IEA)

histone H3K9me2 methyltransferase activity (ISO)

metal ion binding (IEA)

methyltransferase activity (IEA)

protein binding (ISO)

protein methyltransferase activity (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

S-adenosyl-L-methionine binding (IEA)

transcription cis-regulatory region binding (ISO)

ubiquitin-like ligase-substrate adaptor activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

methionine cycle/metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Suv39h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	6,893,110 - 6,922,105 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	1,443,629 - 1,467,229 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	1,443,663 - 1,467,776 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUV39H2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	14,878,866 - 14,904,315 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	14,878,820 - 14,904,315 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	14,920,865 - 14,946,314 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	14,960,905 - 14,986,320 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	14,960,904 - 14,986,308	NCBI
Celera	10	14,848,822 - 14,874,354 (+)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	14,831,341 - 14,856,796 (+)	NCBI		HuRef
CHM1_1	10	14,921,216 - 14,946,434 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	14,892,831 - 14,918,279 (+)	NCBI		T2T-CHM13v2.0

Suv39h2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	3,456,852 - 3,476,085 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	3,456,852 - 3,476,068 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	3,455,815 - 3,474,986 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	3,455,815 - 3,475,031 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	3,373,087 - 3,392,258 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	3,373,092 - 3,392,235 (-)	NCBI		MGSCv36	mm8
Celera	2	3,406,803 - 3,425,973 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	1.95	NCBI

Suv39h2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	79,665,467 - 79,684,492 (+)	NCBI		GRCr8
mRatBN7.2	17	74,756,290 - 74,775,332 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	74,756,306 - 74,775,332 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	78,209,501 - 78,228,542 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,057,802 - 82,076,828 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,092,937 - 76,111,981 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	78,762,897 - 78,782,016 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	78,762,991 - 78,782,016 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	80,406,940 - 80,425,965 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	85,875,954 - 85,894,979 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	85,886,805 - 85,903,145 (+)	NCBI
Celera	17	74,141,962 - 74,160,987 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

Suv39h2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	19,503,197 - 19,528,027 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	19,503,197 - 19,526,454 (-)	NCBI	ChiLan1.0	ChiLan1.0

SUV39H2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	27,404,606 - 27,429,895 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	27,409,940 - 27,435,229 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	14,882,491 - 14,907,724 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	15,211,360 - 15,236,272 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	15,211,360 - 15,237,097 (+)	Ensembl	panpan1.1		panPan2

SUV39H2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	21,715,677 - 21,749,732 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	21,728,964 - 21,749,597 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	18,828,959 - 18,863,033 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	22,017,081 - 22,051,385 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	22,029,347 - 22,051,353 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	19,228,679 - 19,251,776 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	20,052,418 - 20,086,507 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	20,679,024 - 20,713,098 (-)	NCBI		UU_Cfam_GSD_1.0

SUV39H2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	46,873,126 - 46,900,040 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	46,874,606 - 46,900,058 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	51,595,641 - 51,633,086 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SUV39H2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	14,900,503 - 14,924,017 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	14,900,945 - 14,923,447 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	20,439,417 - 20,464,204 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Suv39h2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	597,406 - 618,969 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624805	594,986 - 619,115 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005334276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000002216 ⟹ ENSSTOP00000001976

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936613	1,443,629 - 1,467,229 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032290 ⟹ ENSSTOP00000028490

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936613	1,443,824 - 1,467,229 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032939 ⟹ ENSSTOP00000031043

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936613	1,443,824 - 1,467,229 (+)	Ensembl

RefSeq Acc Id:

XM_005334275 ⟹ XP_005334332

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	6,893,110 - 6,918,140 (+)	NCBI
SpeTri2.0	NW_004936613	1,443,664 - 1,467,776 (+)	NCBI

Sequence:

show sequence

CGCGCAAACCGCTGCGGCCGGGGTCGGCCTGTGTGACGTCAGGACGCCTCGCTGGTTCCATGGC
CCCAGTCTCGGCCCCCAAGTCCCGGGCGAGGGCGGGGCGTCTGGCCAGCTGAGCTATTCCGTCA
GACCGCGCCAGTTTGAATGAATGTTCCACAAGATGGCGGCAGCTGAGGCCGACGCGCGAGGAGC
TTGGTGTGTGCCTTGCCTAGTTTCACTTGATACTCTTCAGGAATATTGTAGAAAAGAAAAGCTC
ACATGTAAATCGATTGGAATCACCAAAAGGAATCTAAACAATTATGAGGTGGAATACTTGTGTG
ACTACAAGGTATTAAAGGATATGGAATATTATCTTGTAAAATGGAAAGGATGGCCAGATTCTAC
AAATACTTGGGAACCCTTACAAAATCTCAAGTGTCCGTTACTACTTCAACAATTCTCTAATGAC
AGGCATAATTATTTATCTCAGGTAAAGAAAGGCAAATCAGTAATTTCAAAAGACAATAACAAAG
CTTTGAAACCTGCTGTTGCTGAATACATTGTAAAGAAAGCCAAACAAAGGATAGCTCTGCAGAG
ATGGCAAGATGAACTCAACAGAAGAAAGAATCATAAAGGAATGATATTTGTTGAAAATACTGTT
GACTTAGAGGGTCCACCTTCAGACTTCTTCTACATTAATGAATACAAACCAGCTCCTGGGATCA
GCTTAGTCAATGAAGCTACATTTGGTTGTTCATGCACAGATTGTTACTTTGAGAAATGTTGTCC
TGCTGAAGCTGGAGTTCTTTTGGCTTATAATAAGAACCAGCAAATTAGAATCCCACCTGGTACC
CCCATCTATGAATGCAACTCAAGGTGCCGATGTGGACCTGATTGTCCCAATAGGATTGTACAAA
AAGGCACACAGTATTCACTTTGCATCTTTCGAACTAGCAATGGCTGTGGCTGGGGTGTAAAAAC
CCTTATGAAGATTAAAAAAATGAGTTTTGTCATGGAATATGTTGGAGAGGTAATCACAAGTGAA
GAAGCTGAAAGACGGGGGCAGTTATATGACAACAAAGGAATCACATATCTCTTTGATCTGGATT
ATGAATCTGATGAATTCACAGTGGATGCAGCCCGATATGGAAATGTGTCTCATTTTGTGAATCA
CAGTTGTGACCCAAATCTTCAGGTGTTCAATGTTTTCATTGATAACCTTGATACTCGTCTTCCC
CGAATAGCATTATTTTCCACAAGAACCATAAATGCTGGAGAAGAGCTGACATTTGATTATCAAA
TGAAAGGTTCTGGAGATGTATCTTCAGATTCTATTGACCATAGCCCTGCCAAAAAGAGGATCAG
AACTGTATGCAAATGTGGAGCTGTGACTTGCAGAGGTTACCTCAACTGAATTTTCAGGAAACAG
AGCTGATGATAATTGTAGTTTTCTCCTCCCCTAATGTTAACACTTTAAAAATAAGTATTTGGGA
CTCTTTCTTATTATCAGGATTATACTTATGTTAATCTACAATTCATGTTTCAAGACATTTGCCA
AATATATTACTGTTGCTTCTGAAGAGGACACAGGGTCATGTAACCGAATTTAAAGTATACATAT
TTGGTGGTTAGACATCAAACATGGAAGACAACTATGGCTCAGCATGTACATACTTATGAAGTCT
GTGTGAACAGAGAAGTGCTCCCTTTACTGTTTGAAACGTGTTAAAATGATAATGCTGAGATGAA
AAATTCATCTTGCCTTATACATTGGTTTCAAAGAAATAGTTGAATTTGGGCTGTATACAAGTTC
TATTTTTGTTACTATATTCCTGTTTAATACCCACTGGTCTTGTTTTTGAGACAAATAGGTGATA
CTGAATTTTTTTACTCTAATTTTCTACTTTTTCATTAAAACCTTGGCATTTTCATGATATAAAA
ATTAAGGTATAAAATTAAAT

hide sequence

RefSeq Acc Id:

XM_005334276 ⟹ XP_005334333

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	6,893,112 - 6,918,140 (+)	NCBI
SpeTri2.0	NW_004936613	1,443,667 - 1,467,776 (+)	NCBI

Sequence:

show sequence

GCAAACCGCTGCGGCCGGGGTCGGCCTGTGTGACGTCAGGACGCCTCGCTGGTTCCATGGCCCC
AGTCTCGGCCCCCAAGTCCCGGGCGAGGGCGGGGCGTCTGGCCAGCTGAGCTATTCCGTCAGAC
CGCGCCAGTTTGAATGAATGTTCCACAAGATGGCGGCAGCTGAGGCCGACGCGCGAGGAGGATA
TGGAATATTATCTTGTAAAATGGAAAGGATGGCCAGATTCTACAAATACTTGGGAACCCTTACA
AAATCTCAAGTGTCCGTTACTACTTCAACAATTCTCTAATGACAGGCATAATTATTTATCTCAG
GTAAAGAAAGGCAAATCAGTAATTTCAAAAGACAATAACAAAGCTTTGAAACCTGCTGTTGCTG
AATACATTGTAAAGAAAGCCAAACAAAGGATAGCTCTGCAGAGATGGCAAGATGAACTCAACAG
AAGAAAGAATCATAAAGGAATGATATTTGTTGAAAATACTGTTGACTTAGAGGGTCCACCTTCA
GACTTCTTCTACATTAATGAATACAAACCAGCTCCTGGGATCAGCTTAGTCAATGAAGCTACAT
TTGGTTGTTCATGCACAGATTGTTACTTTGAGAAATGTTGTCCTGCTGAAGCTGGAGTTCTTTT
GGCTTATAATAAGAACCAGCAAATTAGAATCCCACCTGGTACCCCCATCTATGAATGCAACTCA
AGGTGCCGATGTGGACCTGATTGTCCCAATAGGATTGTACAAAAAGGCACACAGTATTCACTTT
GCATCTTTCGAACTAGCAATGGCTGTGGCTGGGGTGTAAAAACCCTTATGAAGATTAAAAAAAT
GAGTTTTGTCATGGAATATGTTGGAGAGGTAATCACAAGTGAAGAAGCTGAAAGACGGGGGCAG
TTATATGACAACAAAGGAATCACATATCTCTTTGATCTGGATTATGAATCTGATGAATTCACAG
TGGATGCAGCCCGATATGGAAATGTGTCTCATTTTGTGAATCACAGTTGTGACCCAAATCTTCA
GGTGTTCAATGTTTTCATTGATAACCTTGATACTCGTCTTCCCCGAATAGCATTATTTTCCACA
AGAACCATAAATGCTGGAGAAGAGCTGACATTTGATTATCAAATGAAAGGTTCTGGAGATGTAT
CTTCAGATTCTATTGACCATAGCCCTGCCAAAAAGAGGATCAGAACTGTATGCAAATGTGGAGC
TGTGACTTGCAGAGGTTACCTCAACTGAATTTTCAGGAAACAGAGCTGATGATAATTGTAGTTT
TCTCCTCCCCTAATGTTAACACTTTAAAAATAAGTATTTGGGACTCTTTCTTATTATCAGGATT
ATACTTATGTTAATCTACAATTCATGTTTCAAGACATTTGCCAAATATATTACTGTTGCTTCTG
AAGAGGACACAGGGTCATGTAACCGAATTTAAAGTATACATATTTGGTGGTTAGACATCAAACA
TGGAAGACAACTATGGCTCAGCATGTACATACTTATGAAGTCTGTGTGAACAGAGAAGTGCTCC
CTTTACTGTTTGAAACGTGTTAAAATGATAATGCTGAGATGAAAAATTCATCTTGCCTTATACA
TTGGTTTCAAAGAAATAGTTGAATTTGGGCTGTATACAAGTTCTATTTTTGTTACTATATTCCT
GTTTAATACCCACTGGTCTTGTTTTTGAGACAAATAGGTGATACTGAATTTTTTTACTCTAATT
TTCTACTTTTTCATTAAAACCTTGGCATTTTCATGATATAAAAATTAAGGTATAAAATTAAAT

hide sequence

RefSeq Acc Id:

XM_040278747 ⟹ XP_040134681

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	6,893,348 - 6,922,105 (+)	NCBI

RefSeq Acc Id:

XM_040278748 ⟹ XP_040134682

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	6,893,334 - 6,918,140 (+)	NCBI

RefSeq Acc Id:

XM_040278750 ⟹ XP_040134684

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	6,893,338 - 6,918,145 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005334332	(Get FASTA)	NCBI Sequence Viewer
	XP_005334333	(Get FASTA)	NCBI Sequence Viewer
	XP_040134681	(Get FASTA)	NCBI Sequence Viewer
	XP_040134682	(Get FASTA)	NCBI Sequence Viewer
	XP_040134684	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001976.3
	ENSSTOP00000028490.1
	ENSSTOP00000031043.1

RefSeq Acc Id:	XP_005334332 ⟸ XM_005334275
- Peptide Label:	isoform X2
- UniProtKB:	I3LZZ5 (UniProtKB/TrEMBL), A0A287D4Q1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFHKMAAAEADARGAWCVPCLVSLDTLQEYCRKEKLTCKSIGITKRNLNNYEVEYLCDYKVLKD MEYYLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDRHNYLSQVKKGKSVISKDNNKALKPAVA EYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFFYINEYKPAPGISLVNEAT FGCSCTDCYFEKCCPAEAGVLLAYNKNQQIRIPPGTPIYECNSRCRCGPDCPNRIVQKGTQYSL CIFRTSNGCGWGVKTLMKIKKMSFVMEYVGEVITSEEAERRGQLYDNKGITYLFDLDYESDEFT VDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDV SSDSIDHSPAKKRIRTVCKCGAVTCRGYLN hide sequence

RefSeq Acc Id:

XP_005334333 ⟸ XM_005334276

- Peptide Label:

isoform X4

- Sequence:

show sequence

MEYYLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDRHNYLSQVKKGKSVISKDNNKALKPAVA
EYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFFYINEYKPAPGISLVNEAT
FGCSCTDCYFEKCCPAEAGVLLAYNKNQQIRIPPGTPIYECNSRCRCGPDCPNRIVQKGTQYSL
CIFRTSNGCGWGVKTLMKIKKMSFVMEYVGEVITSEEAERRGQLYDNKGITYLFDLDYESDEFT
VDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDV
SSDSIDHSPAKKRIRTVCKCGAVTCRGYLN

hide sequence

RefSeq Acc Id:	XP_040134682 ⟸ XM_040278748
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040134684 ⟸ XM_040278750
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040134681 ⟸ XM_040278747
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D4Q1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000028490 ⟸ ENSSTOT00000032290

Ensembl Acc Id:

ENSSTOP00000031043 ⟸ ENSSTOT00000032939

Ensembl Acc Id:

ENSSTOP00000001976 ⟸ ENSSTOT00000002216

Protein Domains

Chromo Post-SET Pre-SET SET

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002220	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002216.3	UniProtKB/TrEMBL
	ENSSTOT00000032290.1	UniProtKB/TrEMBL
	ENSSTOT00000032939.1	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
	2.40.50.40	UniProtKB/TrEMBL
InterPro	Chromo-like_dom_sf	UniProtKB/TrEMBL
	Chromo/chromo_shadow_dom	UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/TrEMBL
	H3K9_Histone-Lys_N-MTase	UniProtKB/TrEMBL
	Histone_H3-K9_MeTrfase	UniProtKB/TrEMBL
	Post-SET_dom	UniProtKB/TrEMBL
	Pre-SET_dom	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Suv39h2	ENTREZGENE
PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H	UniProtKB/TrEMBL
	HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H2	UniProtKB/TrEMBL
Pfam	Chromo	UniProtKB/TrEMBL
	Pre-SET	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
PIRSF	SUV39_SET	UniProtKB/TrEMBL
PROSITE	CHROMO_1	UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/TrEMBL
	POST_SET	UniProtKB/TrEMBL
	PRE_SET	UniProtKB/TrEMBL
	SAM_MT43_SUVAR39_3	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
SMART	CHROMO	UniProtKB/TrEMBL
	PostSET	UniProtKB/TrEMBL
	PreSET	UniProtKB/TrEMBL
	SET	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54160	UniProtKB/TrEMBL
	SSF82199	UniProtKB/TrEMBL
UniProt	A0A287D4Q1	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DBX5_ICTTR	UniProtKB/TrEMBL
	I3LZZ5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-08-17	Suv39h2	SUV39H2 histone lysine methyltransferase	Suv39h2	suppressor of variegation 3-9 homolog 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIA

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIA

RGD Manual Annotations