SUV39H2 (suppressor of variegation 3-9 homolog 2) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: SUV39H2 (suppressor of variegation 3-9 homolog 2) Sus scrofa
Analyze
Symbol: SUV39H2
Name: suppressor of variegation 3-9 homolog 2
RGD ID: 14222764
Description: ENCODES a protein that exhibits chromatin binding (ortholog); methyltransferase activity (ortholog); protein methyltransferase activity (ortholog); INVOLVED IN histone H3-K9 dimethylation (ortholog); histone H3-K9 trimethylation (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); severe combined immunodeficiency with sensitivity to ionizing radiation (ortholog); FOUND IN heterochromatin (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: histone-lysine N-methyltransferase SUV39H2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,862,584 - 46,900,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,874,606 - 46,900,058 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,595,641 - 51,633,086 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15265077   PMID:23018532  


Genomics

Comparative Map Data
SUV39H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,862,584 - 46,900,040 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,874,606 - 46,900,058 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,595,641 - 51,633,086 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUV39H2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1014,878,820 - 14,904,315 (+)EnsemblGRCh38hg38GRCh38
GRCh381014,878,866 - 14,904,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371014,920,782 - 14,946,314 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361014,960,905 - 14,986,320 (+)NCBINCBI36hg18NCBI36
Build 341014,960,904 - 14,986,308NCBI
Celera1014,848,822 - 14,874,354 (+)NCBI
Cytogenetic Map10p13NCBI
HuRef1014,831,341 - 14,856,796 (+)NCBIHuRef
CHM1_11014,921,216 - 14,946,434 (+)NCBICHM1_1
Suv39h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,456,852 - 3,476,085 (-)NCBIGRCm39mm39
GRCm3823,455,815 - 3,474,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,455,815 - 3,475,031 (-)EnsemblGRCm38mm10GRCm38
MGSCv3723,373,087 - 3,392,258 (-)NCBIGRCm37mm9NCBIm37
MGSCv3623,373,092 - 3,392,235 (-)NCBImm8
Celera23,406,803 - 3,425,973 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.95NCBI
Suv39h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01778,762,897 - 78,782,016 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,762,991 - 78,782,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,406,940 - 80,425,965 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,875,954 - 85,894,979 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11785,886,805 - 85,903,145 (+)NCBI
Celera1774,141,962 - 74,160,987 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Suv39h2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,503,197 - 19,528,027 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,503,197 - 19,526,454 (-)NCBIChiLan1.0ChiLan1.0
SUV39H2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11015,211,360 - 15,236,272 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,211,360 - 15,237,097 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01014,882,491 - 14,907,724 (+)NCBIMhudiblu_PPA_v0panPan3
SUV39H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl221,728,964 - 21,749,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1221,715,677 - 21,749,732 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Suv39h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366131,443,663 - 1,467,776 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUV39H2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,900,503 - 14,924,017 (+)NCBI
ChlSab1.1 Ensembl914,900,945 - 14,923,447 (+)Ensembl
Suv39h2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624805594,986 - 619,115 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012092   ⟹   ENSSSCP00000011784
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,862,584 - 46,899,966 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049142   ⟹   ENSSSCP00000055161
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,873,126 - 46,900,040 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059014   ⟹   ENSSSCP00000039480
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,875,085 - 46,899,966 (-)Ensembl
RefSeq Acc Id: NM_001039747   ⟹   NP_001034836
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,876,462 - 46,899,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668113   ⟹   XP_005668170
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,874,606 - 46,900,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668119   ⟹   XP_005668176
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,875,693 - 46,899,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013980236   ⟹   XP_013835690
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,875,693 - 46,899,572 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005668170   ⟸   XM_005668113
- Peptide Label: isoform X1
- UniProtKB: A0A287A6I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668176   ⟸   XM_005668119
- Peptide Label: isoform X2
- UniProtKB: Q27I49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835690   ⟸   XM_013980236
- Peptide Label: isoform X2
- UniProtKB: Q27I49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034836   ⟸   NM_001039747
- UniProtKB: Q27I49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000055161   ⟸   ENSSSCT00000049142
RefSeq Acc Id: ENSSSCP00000039480   ⟸   ENSSSCT00000059014
RefSeq Acc Id: ENSSSCP00000011784   ⟸   ENSSSCT00000012092
Protein Domains
Chromo   Post-SET   Pre-SET   SET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000011784 UniProtKB/TrEMBL
  ENSSSCP00000039480 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055161 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012092 UniProtKB/TrEMBL
  ENSSSCT00000049142 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000059014 ENTREZGENE, UniProtKB/TrEMBL
InterPro Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/TrEMBL
  Histone_H3-K9_MeTrfase UniProtKB/TrEMBL
  Post-SET_dom UniProtKB/TrEMBL
  Pre-SET_dom UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
KEGG Report ssc:664651 UniProtKB/TrEMBL
NCBI Gene SUV39H2 ENTREZGENE
Pfam Chromo UniProtKB/TrEMBL
  Pre-SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
PIRSF SUV39_SET UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/TrEMBL
  POST_SET UniProtKB/TrEMBL
  PRE_SET UniProtKB/TrEMBL
  SAM_MT43_SUVAR39_3 UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
SMART CHROMO UniProtKB/TrEMBL
  PostSET UniProtKB/TrEMBL
  PreSET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/TrEMBL
UniGene Ssc.24424 ENTREZGENE
UniProt A0A287A6I1 ENTREZGENE, UniProtKB/TrEMBL
  A0A288CFY9_PIG UniProtKB/TrEMBL
  Q27I49 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1RW84 UniProtKB/TrEMBL
VGNC ID VGNC:95841 ENTREZGENE