NDUFAB1 (NADH:ubiquinone oxidoreductase subunit AB1) - Rat Genome Database

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Gene: NDUFAB1 (NADH:ubiquinone oxidoreductase subunit AB1) Homo sapiens
Analyze
Symbol: NDUFAB1
Name: NADH:ubiquinone oxidoreductase subunit AB1
RGD ID: 1313754
HGNC Page HGNC:7694
Description: Enables mitochondrial large ribosomal subunit binding activity. Involved in [2Fe-2S] cluster assembly and protein lipoylation. Located in mitochondrial inner membrane and nucleoplasm. Part of mitochondrial [2Fe-2S] assembly complex and respiratory chain complex I.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ACP; ACP1; acyl carrier protein, mitochondrial; CI-SDAP; complex I SDAP subunit; FASN2A; MGC65095; mitochondrial acyl carrier protein; NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa; NADH-ubiquinone oxidoreductase 9.6 kDa subunit; NADH:ubiquinone oxidoreductase SDAP subunit; SDAP
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: NDUFAB1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,581,014 - 23,596,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,581,014 - 23,596,316 (-)EnsemblGRCh38hg38GRCh38
GRCh371623,592,335 - 23,607,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,499,836 - 23,515,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341623,499,837 - 23,515,140NCBI
Celera1622,370,508 - 22,385,819 (-)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,682,894 - 21,697,748 (-)NCBIHuRef
CHM1_11624,603,886 - 24,619,351 (-)NCBICHM1_1
T2T-CHM13v2.01623,856,813 - 23,872,135 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1HumanBreast Cancer, Familial  IAGPRGD:4058765708554872ClinVar Annotator: match by term: Familial cancer of breastClinVarPMID:16793542|PMID:17200668|PMID:17200671|PMID:24136930|PMID:25099575|PMID:28492532
NDUFAB1HumanBreast Cancer, Familial  IAGPRGD:1564505248554872ClinVar Annotator: match by term: Familial cancer of breastClinVarPMID:17200668|PMID:17200671|PMID:19609323|PMID:28492532
NDUFAB1Humancongenital disorder of glycosylation type IIe  IAGPRGD:1564433828554872ClinVar Annotator: match by term: COG7 congenital disorder of glycosylationClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1Human(1->4)-beta-D-glucan multiple interactionsISORGD:13137556480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of NDUFAB1 mRNACTDPMID:36331819
NDUFAB1Human1,2-dimethylhydrazine multiple interactionsISORGD:13137556480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of NDUFAB1 mRNACTDPMID:22206623
NDUFAB1Human17alpha-ethynylestradiol increases expressionISORGD:13056196480464Ethinyl Estradiol results in increased expression of NDUFAB1 mRNACTDPMID:17108234
NDUFAB1Human17beta-estradiol decreases expressionISORGD:13137556480464Estradiol results in decreased expression of NDUFAB1 mRNACTDPMID:39298647
NDUFAB1Human2,2',4,4'-Tetrabromodiphenyl ether affects expressionISORGD:131375564804642,2',4,4'-tetrabromodiphenyl ether affects the expression of NDUFAB1 mRNACTDPMID:30294300
NDUFAB1Human2,2,2-tetramine multiple interactionsISORGD:13056196480464Trientine inhibits the reaction [Streptozocin results in increased expression of NDUFAB1 protein]CTDPMID:19634143
NDUFAB1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NDUFAB1 mRNACTDPMID:20106945|PMID:21632981
NDUFAB1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13056196480464Tetrachlorodibenzodioxin results in increased expression of NDUFAB1 mRNACTDPMID:33387578
NDUFAB1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13056196480464Tetrachlorodibenzodioxin results in decreased expression of NDUFAB1 mRNACTDPMID:27913140|PMID:32109520
NDUFAB1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13137556480464Tetrachlorodibenzodioxin affects the expression of NDUFAB1 mRNACTDPMID:21570461
NDUFAB1Human2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of NDUFAB1 mRNACTDPMID:30851411
NDUFAB1Human3H-1,2-dithiole-3-thione increases expressionISORGD:130561964804641,2-dithiol-3-thione results in increased expression of NDUFAB1 mRNACTDPMID:19162173
NDUFAB1Human4,4'-sulfonyldiphenol increases expressionISORGD:13137556480464bisphenol S results in increased expression of NDUFAB1 mRNACTDPMID:39298647
NDUFAB1Human4,4'-sulfonyldiphenol multiple interactionsISORGD:13056196480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of more ...CTDPMID:36041667
NDUFAB1Human4,4'-sulfonyldiphenol decreases methylationEXP 6480464bisphenol S results in decreased methylation of NDUFAB1 geneCTDPMID:31601247
NDUFAB1Human4-hydroxyphenyl retinamide affects expressionEXP 6480464Fenretinide affects the expression of NDUFAB1 mRNACTDPMID:16570282
NDUFAB1Human4-hydroxyphenyl retinamide decreases expressionISORGD:13137556480464Fenretinide results in decreased expression of NDUFAB1 mRNACTDPMID:28973697
NDUFAB1Human5-fluorouracil affects expressionEXP 6480464Fluorouracil affects the expression of NDUFAB1 mRNACTDPMID:34151400
NDUFAB1Human6-propyl-2-thiouracil decreases expressionISORGD:13056196480464Propylthiouracil results in decreased expression of NDUFAB1 mRNACTDPMID:30047161
NDUFAB1Human6-propyl-2-thiouracil increases expressionISORGD:13056196480464Propylthiouracil results in increased expression of NDUFAB1 mRNACTDPMID:30047161

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Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1Human[2Fe-2S] cluster assembly involved_inIDA 150520179 PMID:31664822, PMID:38627381UniProtPMID:31664822|PMID:38627381
NDUFAB1Humanaerobic respiration involved_inNAS 150520179 PMID:30030361ComplexPortalPMID:30030361
NDUFAB1Humanfatty acid biosynthetic process involved_inIEAInterPro:IPR003231150520179 InterProGO_REF:0000002
NDUFAB1Humanfatty acid biosynthetic process involved_inIEAUniProtKB-KW:KW-0275150520179 UniProtGO_REF:0000043
NDUFAB1Humanfatty acid biosynthetic process involved_inNAS 150520179 PMID:10234612UniProtPMID:10234612
NDUFAB1Humanfatty acid metabolic process involved_inIEAUniProtKB-KW:KW-0276150520179 UniProtGO_REF:0000043
NDUFAB1Humaniron-sulfur cluster assembly involved_inNAS 150520179 PMID:29097656ComplexPortalPMID:29097656
NDUFAB1Humanlipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
NDUFAB1Humanmitochondrial electron transport, NADH to ubiquinone involved_inNAS 150520179 PMID:9878551UniProtPMID:9878551
NDUFAB1Humanprotein lipoylation involved_inIMP 150520179 PMID:21846720UniProtPMID:21846720
NDUFAB1Humanproton motive force-driven mitochondrial ATP synthesis involved_inNAS 150520179 PMID:30030361ComplexPortalPMID:30030361
1 to 11 of 11 rows

Cellular Component
1 to 20 of 21 rows

  
Object Symbol
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Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1Humaniron-sulfur cluster assembly complex part_ofNAS 150520179 PMID:29097656ComplexPortalPMID:29097656
NDUFAB1Humanmitochondrial [2Fe-2S] assembly complex part_ofIDA 150520179 PMID:31101807FlyBasePMID:31101807
NDUFAB1Humanmitochondrial inner membrane located_inTAS 150520179 ReactomeReactome:R-HSA-163217|Reactome:R-HSA-6793590|Reactome:R-HSA-6799178|Reactome:R-HSA-6799179|Reactome:R-HSA-6799191|Reactome:R-HSA-6799196|Reactome:R-HSA-6799197|Reactome:R-HSA-6799202|Reactome:R-HSA-8933547
NDUFAB1Humanmitochondrial inner membrane is_active_inIEAUniProtKB:Q9CR21|ensembl:ENSMUSP00000033157150520179 EnsemblGO_REF:0000107
NDUFAB1Humanmitochondrial inner membrane located_inIDA 150520179 PMID:28844695ComplexPortalPMID:28844695
NDUFAB1Humanmitochondrial matrix located_inISSUniProtKB:P52505150520179 UniProtGO_REF:0000024
NDUFAB1Humanmitochondrial membrane located_inNAS 150520179 PMID:10234612UniProtPMID:10234612
NDUFAB1Humanmitochondrial membrane located_inISSUniProtKB:P52505150520179 UniProtGO_REF:0000024
NDUFAB1Humanmitochondrion located_inNAS 150520179 PMID:27519411ComplexPortalPMID:27519411
NDUFAB1Humanmitochondrion is_active_inIBAMGI:1917566|PANTHER:PTN000466616|SGD:S000001675|TAIR:locus:2042331|TAIR:locus:2168968|TAIR:locus:2206300|UniProtKB:O14561|UniProtKB:P52505|UniProtKB:Q57WW9|UniProtKB:Q8I0V5150520179 GO_CentralGO_REF:0000033
NDUFAB1Humanmitochondrion located_inIEAARBA:ARBA00026962150520179 UniProtGO_REF:0000117
NDUFAB1Humanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
NDUFAB1Humanmitochondrion located_inIEAUniProtKB-SubCell:SL-0173150520179 UniProtGO_REF:0000044
NDUFAB1Humanmitochondrion located_inHTP 150520179 PMID:34800366FlyBasePMID:34800366
NDUFAB1Humanmitochondrion located_inIDA 150520179 HPAGO_REF:0000052
NDUFAB1Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
NDUFAB1Humanrespiratory chain complex I part_ofISSUniProtKB:P52505150520179 UniProtGO_REF:0000024
NDUFAB1Humanrespiratory chain complex I part_ofIBAFB:FBgn0011361|MGI:1917566|PANTHER:PTN001074652|UniProtKB:O14561|UniProtKB:P52505150520179 GO_CentralGO_REF:0000033
NDUFAB1Humanrespiratory chain complex I part_ofIEAUniProtKB:Q9CR21|ensembl:ENSMUSP00000033157150520179 EnsemblGO_REF:0000107
NDUFAB1Humanrespiratory chain complex I part_ofIDA 150520179 PMID:12611891, PMID:27626371UniProtPMID:12611891|PMID:27626371
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Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1Humanacyl binding enablesIBAPANTHER:PTN000466551|UniProtKB:P0A6A8|UniProtKB:P9WQF3150520179 GO_CentralGO_REF:0000033
NDUFAB1Humanacyl carrier activity enablesNAS 150520179 PMID:10234612UniProtPMID:10234612
NDUFAB1Humanacyl carrier activity enablesIBAPANTHER:PTN000466551|TAIR:locus:2042331|TAIR:locus:2168968|TAIR:locus:2206300|UniProtKB:P0A6A8|UniProtKB:P9WQF1|UniProtKB:P9WQF3|UniProtKB:Q57WW9150520179 GO_CentralGO_REF:0000033
NDUFAB1Humancalcium ion binding enablesNAS 150520179 PMID:10234612UniProtPMID:10234612
NDUFAB1Humanfatty acid binding enablesISSUniProtKB:P52505150520179 UniProtGO_REF:0000024
NDUFAB1Humanmitochondrial large ribosomal subunit binding enablesIDA 150520179 PMID:28892042UniProtPMID:28892042
NDUFAB1Humanprotein binding enablesIPIUniProtKB:P02760-PRO_0000017886150520179 PMID:23157686UniProtPMID:23157686
NDUFAB1Humanprotein binding enablesIPIUniProtKB:Q9HD34|UniProtKB:Q9Y697150520179 PMID:31664822UniProtPMID:31664822
NDUFAB1Humanprotein binding enablesIPIUniProtKB:L0R8F8150520179 PMID:28892042, PMID:30215512UniProtPMID:28892042|PMID:30215512
NDUFAB1Humanprotein binding enablesIPIUniProtKB:O43482|UniProtKB:O43711|UniProtKB:P17023|UniProtKB:P17980|UniProtKB:P25791-3|UniProtKB:P26441|UniProtKB:Q08043|UniProtKB:Q08AM6|UniProtKB:Q13643|UniProtKB:Q16656-4|UniProtKB:Q3KNS6-3|UniProtKB:Q53EP0-3|UniProtKB:Q5H9J7|UniProtKB:Q6PF18|UniProtKB:Q7L273|UniProtKB:Q86UR1-2|UniProtKB:Q86VK4-3|UniProtKB:Q8N4L8|UniProtKB:Q8TBB1|UniProtKB:Q969H6|UniProtKB:Q96HA8|UniProtKB:Q96I34|UniProtKB:Q96NM4-3|UniProtKB:Q96PG8|UniProtKB:Q9BQA5|UniProtKB:Q9BSK4|UniProtKB:Q9GZT3|UniProtKB:Q9NVV9150520179 PMID:32296183IntActPMID:32296183
NDUFAB1Humanprotein binding enablesIPIUniProtKB:Q9GZT3150520179 PMID:28892042IntActPMID:28892042
NDUFAB1Humanprotein binding enablesIPIUniProtKB:Q6IPR1150520179 PMID:27499296UniProtPMID:27499296
NDUFAB1Humanstructural molecule activity enablesIDA 150520179 PMID:28634302FlyBasePMID:28634302
1 to 13 of 13 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NDUFAB1HumanAlzheimer's disease pathway   IEA 6907045 KEGGhsa:05010
NDUFAB1HumanHuntington's disease pathway   IEA 6907045 KEGGhsa:05016
NDUFAB1Humanoxidative phosphorylation pathway  IEA 6907045 KEGGhsa:00190
NDUFAB1HumanParkinson's disease pathway   IEA 6907045 KEGGhsa:05012

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:1907568   PMID:9763677   PMID:9878551   PMID:10234612   PMID:10493829   PMID:12477932   PMID:12611891   PMID:12882974   PMID:15489334   PMID:17554300   PMID:17601350   PMID:18230186  
PMID:18977241   PMID:19221180   PMID:19343046   PMID:20877624   PMID:21846720   PMID:21873635   PMID:21988832   PMID:23157686   PMID:24344204   PMID:25437307   PMID:26186194   PMID:26344197  
PMID:27499296   PMID:27519411   PMID:27626371   PMID:28514442   PMID:28634302   PMID:28844695   PMID:28892042   PMID:29097656   PMID:29395067   PMID:29507755   PMID:29568061   PMID:29615496  
PMID:29983374   PMID:30030361   PMID:30215512   PMID:31091453   PMID:31101807   PMID:31536960   PMID:31586073   PMID:31664822   PMID:31980649   PMID:32296183   PMID:32628020   PMID:32877691  
PMID:33961781   PMID:34373451   PMID:34800366   PMID:35013218   PMID:35063084   PMID:35235311   PMID:35271311   PMID:35575683   PMID:35831314   PMID:37071682   PMID:37788672   PMID:38039071  
PMID:38627381  



NDUFAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,581,014 - 23,596,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,581,014 - 23,596,316 (-)EnsemblGRCh38hg38GRCh38
GRCh371623,592,335 - 23,607,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,499,836 - 23,515,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341623,499,837 - 23,515,140NCBI
Celera1622,370,508 - 22,385,819 (-)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,682,894 - 21,697,748 (-)NCBIHuRef
CHM1_11624,603,886 - 24,619,351 (-)NCBICHM1_1
T2T-CHM13v2.01623,856,813 - 23,872,135 (-)NCBIT2T-CHM13v2.0
Ndufab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397121,686,038 - 121,701,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7121,684,626 - 121,701,109 (-)EnsemblGRCm39 Ensembl
GRCm387122,086,815 - 122,101,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,085,403 - 122,101,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv377129,231,558 - 129,245,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367121,879,192 - 121,892,996 (-)NCBIMGSCv36mm8
Celera7121,978,262 - 121,992,066 (-)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.38NCBI
Ndufab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,075,933 - 186,091,843 (-)NCBIGRCr8
mRatBN7.21176,644,696 - 176,658,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1176,644,703 - 176,658,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1184,972,598 - 184,985,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01192,158,550 - 192,171,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,842,359 - 184,855,803 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01192,044,209 - 192,057,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,044,216 - 192,057,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,106,654 - 199,120,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,908,331 - 180,921,734NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1174,354,467 - 174,367,869 (-)NCBICelera
Cytogenetic Map1q36NCBI
NDUFAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21824,992,700 - 25,008,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11629,512,277 - 29,527,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01614,513,734 - 14,529,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11623,833,485 - 23,849,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1623,833,485 - 23,849,085 (-)Ensemblpanpan1.1panPan2
NDUFAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,242,398 - 22,253,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,809,195 - 23,819,836 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,384,797 - 22,395,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,384,805 - 22,395,444 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,189,574 - 22,200,230 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0622,092,316 - 22,102,957 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,487,392 - 22,498,037 (+)NCBIUU_Cfam_GSD_1.0
Ndufab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,135,060 - 120,142,818 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,232,140 - 8,240,739 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,232,920 - 8,240,675 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,619,492 - 22,635,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,619,458 - 22,631,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21050,608 - 62,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,306,014 - 21,317,721 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660688,480,979 - 8,493,485 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247828,740,125 - 8,749,473 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247828,739,614 - 8,748,968 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in NDUFAB1
14 total Variants

1 to 10 of 55 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16p13.11-12.1(chr16:14954894-28306843)x3 copy number gain See cases [RCV000051828] Chr16:14954894..28306843 [GRCh38]
Chr16:15048751..28318164 [GRCh37]
Chr16:14956252..28225665 [NCBI36]
Chr16:16p13.11-12.1
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:21463739-29249579)x3 copy number gain See cases [RCV000051829] Chr16:21463739..29249579 [GRCh38]
Chr16:21475060..29260900 [GRCh37]
Chr16:21382561..29168401 [NCBI36]
Chr16:16p12.2-11.2
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:21602183-29314373)x3 copy number gain See cases [RCV000051842] Chr16:21602183..29314373 [GRCh38]
Chr16:21613504..29325694 [GRCh37]
Chr16:21521005..29233195 [NCBI36]
Chr16:16p12.2-11.2
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:23047969-30632245)x3 copy number gain See cases [RCV000052401] Chr16:23047969..30632245 [GRCh38]
Chr16:23059290..30643566 [GRCh37]
Chr16:22966791..30551067 [NCBI36]
Chr16:16p12.2-11.2
pathogenic
GRCh38/hg38 16p12.2-12.1(chr16:21600992-28323344)x1 copy number loss See cases [RCV000052519] Chr16:21600992..28323344 [GRCh38]
Chr16:21612313..28334665 [GRCh37]
Chr16:21519814..28242166 [NCBI36]
Chr16:16p12.2-12.1
pathogenic
GRCh38/hg38 16p13.3-11.2(chr16:4644892-29170820)x3 copy number gain See cases [RCV000133809] Chr16:4644892..29170820 [GRCh38]
Chr16:4694893..29182141 [GRCh37]
Chr16:4634894..29089642 [NCBI36]
Chr16:16p13.3-11.2
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:22634385-29227323)x3 copy number gain See cases [RCV000135594] Chr16:22634385..29227323 [GRCh38]
Chr16:22645706..29238644 [GRCh37]
Chr16:22553207..29146145 [NCBI36]
Chr16:16p12.2-11.2
likely pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:21350622-29202837)x3 copy number gain See cases [RCV000140235] Chr16:21350622..29202837 [GRCh38]
Chr16:21361943..29214158 [GRCh37]
Chr16:21269444..29121659 [NCBI36]
Chr16:16p12.2-11.2
likely pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:102839-28327676)x3 copy number gain See cases [RCV000203445] Chr16:102839..28327676 [GRCh37]
Chr16:16p13.3-11.2
pathogenic
GRCh37/hg19 16p12.3-11.2(chr16:19590412-29814175)x3 copy number gain Breast ductal adenocarcinoma [RCV000207226] Chr16:19590412..29814175 [GRCh37]
Chr16:16p12.3-11.2
uncertain significance
1 to 10 of 55 rows

Predicted Target Of
Summary Value
Count of predictions:676
Count of miRNA genes:391
Interacting mature miRNAs:422
Transcripts:ENST00000007516, ENST00000484769, ENST00000562133, ENST00000567761, ENST00000570319
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

RH64954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,595,893 - 23,596,051UniSTSGRCh37
Build 361623,503,394 - 23,503,552RGDNCBI36
Celera1622,374,066 - 22,374,224RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,686,480 - 21,686,638UniSTS
RH93191  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,592,386 - 23,592,507UniSTSGRCh37
Build 361623,499,887 - 23,500,008RGDNCBI36
Celera1622,370,559 - 22,370,680RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,682,945 - 21,683,066UniSTS
GeneMap99-GB4 RH Map16194.86UniSTS
SHGC-32823  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,592,382 - 23,592,483UniSTSGRCh37
Build 361623,499,883 - 23,499,984RGDNCBI36
Celera1622,370,555 - 22,370,656RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,682,941 - 21,683,042UniSTS
TNG Radiation Hybrid Map1613683.0UniSTS
Stanford-G3 RH Map161264.0UniSTS
GeneMap99-G3 RH Map161224.0UniSTS
G20300  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,595,961 - 23,596,087UniSTSGRCh37
Build 361623,503,462 - 23,503,588RGDNCBI36
Celera1622,374,134 - 22,374,260RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,686,548 - 21,686,674UniSTS
A005L06  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,595,961 - 23,596,087UniSTSGRCh37
Build 361623,503,462 - 23,503,588RGDNCBI36
Celera1622,374,134 - 22,374,260RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,686,548 - 21,686,674UniSTS
GeneMap99-GB4 RH Map16197.65UniSTS
NCBI RH Map16229.3UniSTS
SGC33525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371623,595,824 - 23,595,949UniSTSGRCh37
Build 361623,503,325 - 23,503,450RGDNCBI36
Celera1622,373,997 - 22,374,122RGD
Cytogenetic Map16p12.2UniSTS
HuRef1621,686,411 - 21,686,536UniSTS
GeneMap99-GB4 RH Map16193.96UniSTS
Whitehead-RH Map16113.5UniSTS
NCBI RH Map16230.2UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1



Ensembl Acc Id: ENST00000007516   ⟹   ENSP00000007516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1623,581,014 - 23,596,316 (-)Ensembl
Ensembl Acc Id: ENST00000484769   ⟹   ENSP00000454812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1623,581,033 - 23,596,303 (-)Ensembl
Ensembl Acc Id: ENST00000562133   ⟹   ENSP00000454891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1623,581,014 - 23,596,277 (-)Ensembl
Ensembl Acc Id: ENST00000567761   ⟹   ENSP00000461693
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1623,582,335 - 23,591,153 (-)Ensembl
Ensembl Acc Id: ENST00000570319   ⟹   ENSP00000458770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1623,581,871 - 23,596,291 (-)Ensembl
RefSeq Acc Id: NM_005003   ⟹   NP_004994
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381623,581,014 - 23,596,316 (-)NCBI
GRCh371623,592,335 - 23,607,639 (-)RGD
Build 361623,499,836 - 23,515,140 (-)NCBI Archive
Celera1622,370,508 - 22,385,819 (-)RGD
HuRef1621,682,894 - 21,697,748 (-)RGD
CHM1_11624,603,886 - 24,619,351 (-)NCBI
T2T-CHM13v2.01623,856,813 - 23,872,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011545856   ⟹   XP_011544158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381623,581,014 - 23,596,316 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054380402   ⟹   XP_054236377
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01623,856,813 - 23,872,135 (-)NCBI
RefSeq Acc Id: NP_004994   ⟸   NM_005003
- Peptide Label: precursor
- UniProtKB: B2R4M1 (UniProtKB/Swiss-Prot),   Q9UNV1 (UniProtKB/Swiss-Prot),   O14561 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011544158   ⟸   XM_011545856
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000458770   ⟸   ENST00000570319
Ensembl Acc Id: ENSP00000007516   ⟸   ENST00000007516
Ensembl Acc Id: ENSP00000454891   ⟸   ENST00000562133
Carrier

Name Modeler Protein Id AA Range Protein Structure
AF-O14561-F1-model_v2 AlphaFold O14561 1-156 view protein structure

RGD ID:6793310
Promoter ID:HG_KWN:23311
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000214058,   OTTHUMT00000214059
Position:
Human AssemblyChrPosition (strand)Source
Build 361623,514,856 - 23,515,356 (-)MPROMDB
RGD ID:6851504
Promoter ID:EP73553
Type:single initiation site
Name:HS_NDUFAB1
Description:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1,8kDa.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361623,515,136 - 23,515,196EPD
RGD ID:7231609
Promoter ID:EPDNEW_H21549
Type:initiation region
Name:NDUFAB1_1
Description:NADH:ubiquinone oxidoreductase subunit AB1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381623,596,316 - 23,596,376EPDNEW


1 to 32 of 32 rows
Database
Acc Id
Source(s)
COSMIC NDUFAB1 COSMIC
Ensembl Genes ENSG00000004779 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000007516 ENTREZGENE
  ENST00000007516.8 UniProtKB/Swiss-Prot
  ENST00000570319.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1200.10 UniProtKB/Swiss-Prot
GTEx ENSG00000004779 GTEx
HGNC ID HGNC:7694 ENTREZGENE
Human Proteome Map NDUFAB1 Human Proteome Map
InterPro ACP-like_sf UniProtKB/Swiss-Prot
  Acyl_carrier UniProtKB/Swiss-Prot
  PP-bd_ACP UniProtKB/Swiss-Prot
  Ppantetheine_attach_site UniProtKB/Swiss-Prot
KEGG Report hsa:4706 UniProtKB/Swiss-Prot
NCBI Gene 4706 ENTREZGENE
OMIM 603836 OMIM
PANTHER ACYL CARRIER PROTEIN, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR20863 UniProtKB/Swiss-Prot
Pfam PP-binding UniProtKB/Swiss-Prot
PharmGKB PA31500 PharmGKB
PROSITE CARRIER UniProtKB/Swiss-Prot
  PHOSPHOPANTETHEINE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47336 UniProtKB/Swiss-Prot
UniProt ACPM_HUMAN UniProtKB/Swiss-Prot
  B2R4M1 ENTREZGENE
  H3BNE8_HUMAN UniProtKB/TrEMBL
  H3BNK3_HUMAN UniProtKB/TrEMBL
  I3L505_HUMAN UniProtKB/TrEMBL
  O14561 ENTREZGENE
  Q9UNV1 ENTREZGENE
UniProt Secondary B2R4M1 UniProtKB/Swiss-Prot
  Q9UNV1 UniProtKB/Swiss-Prot
1 to 32 of 32 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 NDUFAB1  NADH:ubiquinone oxidoreductase subunit AB1    NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa  Symbol and/or name change 5135510 APPROVED