NDUFAB1 (NADH:ubiquinone oxidoreductase subunit AB1) - Rat Genome Database

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Gene: NDUFAB1 (NADH:ubiquinone oxidoreductase subunit AB1) Sus scrofa
Analyze
Symbol: NDUFAB1
Name: NADH:ubiquinone oxidoreductase subunit AB1
RGD ID: 13924579
Description: ENCODES a protein that exhibits acyl binding (inferred); acyl carrier activity (inferred); mitochondrial large ribosomal subunit binding (inferred); INVOLVED IN [2Fe-2S] cluster assembly (inferred); fatty acid biosynthetic process (inferred); mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); congenital disorder of glycosylation type IIe (ortholog); genetic disease (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acyl carrier protein, mitochondrial; NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,619,492 - 22,635,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,619,458 - 22,631,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21050,608 - 62,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NDUFAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,619,492 - 22,635,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,619,458 - 22,631,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21050,608 - 62,608 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,581,014 - 23,596,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,581,014 - 23,596,316 (-)EnsemblGRCh38hg38GRCh38
GRCh371623,592,335 - 23,607,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,499,836 - 23,515,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341623,499,837 - 23,515,140NCBI
Celera1622,370,508 - 22,385,819 (-)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,682,894 - 21,697,748 (-)NCBIHuRef
CHM1_11624,603,886 - 24,619,351 (-)NCBICHM1_1
T2T-CHM13v2.01623,856,813 - 23,872,135 (-)NCBIT2T-CHM13v2.0
Ndufab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397121,686,038 - 121,701,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7121,684,626 - 121,701,109 (-)EnsemblGRCm39 Ensembl
GRCm387122,086,815 - 122,101,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,085,403 - 122,101,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv377129,231,558 - 129,245,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367121,879,192 - 121,892,996 (-)NCBIMGSCv36mm8
Celera7121,978,262 - 121,992,066 (-)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.38NCBI
Ndufab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,075,933 - 186,091,843 (-)NCBIGRCr8
mRatBN7.21176,644,696 - 176,658,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1176,644,703 - 176,658,099 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1184,972,598 - 184,985,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01192,158,550 - 192,171,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,842,359 - 184,855,803 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01192,044,209 - 192,057,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,044,216 - 192,057,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,106,654 - 199,120,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41180,908,331 - 180,921,734NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1174,354,467 - 174,367,869 (-)NCBICelera
Cytogenetic Map1q36NCBI
NDUFAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21824,992,700 - 25,008,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11629,512,277 - 29,527,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01614,513,734 - 14,529,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11623,833,485 - 23,849,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1623,833,485 - 23,849,085 (-)Ensemblpanpan1.1panPan2
NDUFAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,242,398 - 22,253,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,809,195 - 23,819,836 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,384,797 - 22,395,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,384,805 - 22,395,444 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,189,574 - 22,200,230 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0622,092,316 - 22,102,957 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,487,392 - 22,498,037 (+)NCBIUU_Cfam_GSD_1.0
Ndufab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,135,060 - 120,142,818 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,232,140 - 8,240,739 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,232,920 - 8,240,675 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,306,014 - 21,317,721 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660688,480,979 - 8,493,485 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247828,740,125 - 8,749,473 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247828,739,614 - 8,748,968 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFAB1
342 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011811   ⟹   ENSSSCP00000011508
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl322,619,492 - 22,631,559 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000065658   ⟹   ENSSSCP00000040903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl322,619,492 - 22,635,288 (+)Ensembl
RefSeq Acc Id: NM_001167652   ⟹   NP_001161124
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1322,619,516 - 22,630,645 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005656762   ⟹   XP_005656819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1322,619,458 - 22,631,575 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005656819   ⟸   XM_005656762
- Peptide Label: isoform X1
- UniProtKB: A0A287AAR5 (UniProtKB/TrEMBL),   A0A8D1CP07 (UniProtKB/TrEMBL),   A0A8D0U0G9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161124   ⟸   NM_001167652
- UniProtKB: D0G781 (UniProtKB/TrEMBL),   A0A4X1V0C8 (UniProtKB/TrEMBL),   A0A8D0U0G9 (UniProtKB/TrEMBL),   A0A8D1KH26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000040903   ⟸   ENSSSCT00000065658
RefSeq Acc Id: ENSSSCP00000011508   ⟸   ENSSSCT00000011811
Protein Domains
Carrier


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010795 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005009505 UniProtKB/TrEMBL
  ENSSSCG00015029306 UniProtKB/TrEMBL
  ENSSSCG00025046750 UniProtKB/TrEMBL
  ENSSSCG00030066537 UniProtKB/TrEMBL
  ENSSSCG00035020491 UniProtKB/TrEMBL
  ENSSSCG00040060751 UniProtKB/TrEMBL
  ENSSSCG00045037588 UniProtKB/TrEMBL
  ENSSSCG00050078149 UniProtKB/TrEMBL
  ENSSSCG00055008410 UniProtKB/TrEMBL
  ENSSSCG00065040040 UniProtKB/TrEMBL
  ENSSSCG00070020766 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000065658 ENTREZGENE
  ENSSSCT00000065658.2 UniProtKB/TrEMBL
  ENSSSCT00005014542.1 UniProtKB/TrEMBL
  ENSSSCT00015038886.1 UniProtKB/TrEMBL
  ENSSSCT00025063650.1 UniProtKB/TrEMBL
  ENSSSCT00030092990.1 UniProtKB/TrEMBL
  ENSSSCT00035026652.1 UniProtKB/TrEMBL
  ENSSSCT00040082653.1 UniProtKB/TrEMBL
  ENSSSCT00040082718.1 UniProtKB/TrEMBL
  ENSSSCT00045064895.1 UniProtKB/TrEMBL
  ENSSSCT00050107671.1 UniProtKB/TrEMBL
  ENSSSCT00050107703.1 UniProtKB/TrEMBL
  ENSSSCT00055016422.1 UniProtKB/TrEMBL
  ENSSSCT00055016458.1 UniProtKB/TrEMBL
  ENSSSCT00065054765.1 UniProtKB/TrEMBL
  ENSSSCT00070041317.1 UniProtKB/TrEMBL
  ENSSSCT00070041353.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.10 UniProtKB/TrEMBL
InterPro ACP-like_sf UniProtKB/TrEMBL
  Acyl_carrier UniProtKB/TrEMBL
  PP-bd_ACP UniProtKB/TrEMBL
  Ppantetheine_attach_site UniProtKB/TrEMBL
KEGG Report ssc:100312976 UniProtKB/TrEMBL
NCBI Gene NDUFAB1 ENTREZGENE
PANTHER ACYL CARRIER PROTEIN, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR20863 UniProtKB/TrEMBL
Pfam PP-binding UniProtKB/TrEMBL
PROSITE CARRIER UniProtKB/TrEMBL
  PHOSPHOPANTETHEINE UniProtKB/TrEMBL
Superfamily-SCOP SSF47336 UniProtKB/TrEMBL
UniProt A0A287AAR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V0C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U0G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CP07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KH26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q218_PIG UniProtKB/TrEMBL
  D0G781 ENTREZGENE
UniProt Secondary D0G781 UniProtKB/TrEMBL
VGNC ID VGNC:104004 ENTREZGENE