Evx2 (even-skipped homeobox 2) - Rat Genome Database

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Gene: Evx2 (even-skipped homeobox 2) Mus musculus
Analyze
Symbol: Evx2
Name: even-skipped homeobox 2
RGD ID: 1313716
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within limb morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; genitourinary system; limb; limb bud; and sensory organ. Orthologous to human EVX2 (even-skipped homeobox 2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: even skipped homeotic gene 2 homolog; Evx-; Evx-2; homeobox even-skipped homolog protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,483,333 - 74,491,864 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,483,335 - 74,489,901 (-)EnsemblGRCm39 Ensembl
GRCm38274,652,989 - 74,661,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,652,991 - 74,659,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv37274,493,673 - 74,497,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,456,455 - 74,460,258 (-)NCBIMGSCv36mm8
Celera276,325,721 - 76,329,525 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1349539   PMID:1611218   PMID:1684419   PMID:1971786   PMID:2064805   PMID:7579515   PMID:7896287   PMID:8674109   PMID:8751373   PMID:8900279   PMID:8978061   PMID:8978698  
PMID:10075849   PMID:10319820   PMID:11239429   PMID:11544178   PMID:11567614   PMID:11902682   PMID:12403721   PMID:12435628   PMID:12466851   PMID:12477932   PMID:12679098   PMID:12732147  
PMID:12874134   PMID:14723851   PMID:15236237   PMID:15578713   PMID:16322559   PMID:16399081   PMID:16602821   PMID:17245451   PMID:18245448   PMID:18287559   PMID:20059953   PMID:20081190  
PMID:21098566   PMID:21145498   PMID:21195707   PMID:21267068   PMID:21423180   PMID:21637793   PMID:21677750   PMID:21873635   PMID:22118467   PMID:22988430   PMID:23134724   PMID:23818637  
PMID:24075990   PMID:24146773   PMID:24398455   PMID:24553291   PMID:24952961   PMID:25960414   PMID:27198226   PMID:27974206   PMID:29273679   PMID:30177510   PMID:30917309   PMID:31152445  
PMID:31299961  


Genomics

Comparative Map Data
Evx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,483,333 - 74,491,864 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,483,335 - 74,489,901 (-)EnsemblGRCm39 Ensembl
GRCm38274,652,989 - 74,661,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,652,991 - 74,659,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv37274,493,673 - 74,497,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,456,455 - 74,460,258 (-)NCBIMGSCv36mm8
Celera276,325,721 - 76,329,525 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
EVX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382176,077,472 - 176,083,962 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2176,077,472 - 176,083,962 (-)EnsemblGRCh38hg38GRCh38
GRCh372176,942,200 - 176,948,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,653,081 - 176,656,936 (-)NCBINCBI36Build 36hg18NCBI36
Celera2170,553,985 - 170,557,840 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2168,822,321 - 168,826,177 (-)NCBIHuRef
CHM1_12176,950,682 - 176,954,537 (-)NCBICHM1_1
T2T-CHM13v2.02176,565,581 - 176,572,075 (-)NCBIT2T-CHM13v2.0
Evx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,965,630 - 79,969,700 (-)NCBIGRCr8
mRatBN7.2359,558,197 - 59,562,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,558,197 - 59,561,872 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0361,564,917 - 61,581,598 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,578,229 - 61,581,598 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0368,032,231 - 68,048,055 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,262,625 - 57,274,916 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1357,166,866 - 57,172,821 (-)NCBI
Celera359,080,928 - 59,084,154 (-)NCBICelera
Cytogenetic Map3q23NCBI
Evx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540320,578,813 - 20,582,409 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540320,578,813 - 20,582,409 (+)NCBIChiLan1.0ChiLan1.0
EVX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21378,745,037 - 78,752,561 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B78,760,013 - 78,767,481 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B63,359,892 - 63,364,762 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B181,069,133 - 181,073,347 (-)NCBIpanpan1.1PanPan1.1panPan2
EVX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,887,095 - 19,891,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3619,887,524 - 19,891,247 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,897,402 - 19,901,132 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03620,028,549 - 20,032,283 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3620,028,549 - 20,032,913 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13620,102,621 - 20,106,351 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03620,103,583 - 20,107,304 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03620,215,301 - 20,219,023 (-)NCBIUU_Cfam_GSD_1.0
Evx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303137,010,758 - 137,017,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365095,566,432 - 5,571,005 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365095,566,432 - 5,571,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EVX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,881,362 - 81,885,193 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,881,362 - 81,884,994 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,345,989 - 91,354,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EVX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11061,650,763 - 61,659,724 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1061,654,829 - 61,658,494 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040137,951,216 - 137,955,814 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Evx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,221,382 - 13,224,978 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,221,382 - 13,224,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2604
Count of miRNA genes:830
Interacting mature miRNAs:1171
Transcripts:ENSMUST00000001867, ENSMUST00000173623
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
1301059Hrtfm1_mheart failure modifier 1 (mouse)Not determined26759194074964933Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
D2Tfv7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38274,657,541 - 74,657,770UniSTSGRCm38
MGSCv37274,495,598 - 74,495,827UniSTSGRCm37
Celera276,327,647 - 76,327,876UniSTS
Cytogenetic Map2C3UniSTS
cM Map245.0UniSTS
cM Map2 UniSTS
Evx2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38274,658,028 - 74,659,022UniSTSGRCm38
MGSCv37274,496,085 - 74,497,079UniSTSGRCm37
Celera276,328,134 - 76,329,128UniSTS
Cytogenetic Map2C3UniSTS
cM Map245.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000001867   ⟹   ENSMUSP00000001867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,483,335 - 74,489,901 (-)Ensembl
GRCm38.p6 Ensembl274,652,991 - 74,659,557 (-)Ensembl
Ensembl Acc Id: ENSMUST00000173623   ⟹   ENSMUSP00000134131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,485,960 - 74,489,763 (-)Ensembl
GRCm38.p6 Ensembl274,655,616 - 74,659,419 (-)Ensembl
RefSeq Acc Id: NM_007967   ⟹   NP_031993
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39274,483,335 - 74,489,901 (-)NCBI
GRCm38274,652,991 - 74,659,557 (-)NCBI
MGSCv37274,493,673 - 74,497,476 (-)RGD
Celera276,325,721 - 76,329,525 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006498728   ⟹   XP_006498791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39274,483,333 - 74,491,864 (-)NCBI
GRCm38274,652,989 - 74,661,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498729   ⟹   XP_006498792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39274,483,333 - 74,491,864 (-)NCBI
GRCm38274,652,989 - 74,661,520 (-)NCBI
Sequence:
RefSeq Acc Id: NP_031993   ⟸   NM_007967
- UniProtKB: P49749 (UniProtKB/Swiss-Prot),   G5E813 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498792   ⟸   XM_006498729
- Peptide Label: isoform X1
- UniProtKB: P49749 (UniProtKB/Swiss-Prot),   G5E813 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498791   ⟸   XM_006498728
- Peptide Label: isoform X1
- UniProtKB: P49749 (UniProtKB/Swiss-Prot),   G5E813 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000134131   ⟸   ENSMUST00000173623
Ensembl Acc Id: ENSMUSP00000001867   ⟸   ENSMUST00000001867
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49749-F1-model_v2 AlphaFold P49749 1-475 view protein structure

Promoters
RGD ID:6877646
Promoter ID:EPDNEW_M2274
Type:single initiation site
Name:Evx2_1
Description:Mus musculus even-skipped homeobox 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38274,659,595 - 74,659,655EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95462 AgrOrtholog
Ensembl Genes ENSMUSG00000001815 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001867 ENTREZGENE
  ENSMUST00000001867.13 UniProtKB/TrEMBL
  ENSMUST00000173623.2 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Even-skipped_HD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95462 ENTREZGENE
NCBI Gene 14029 ENTREZGENE
PANTHER HOMEOBOX EVEN-SKIPPED HOMOLOG PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEGMENTATION PROTEIN EVEN-SKIPPED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Evx2 PhenoGen
PRINTS HOMEOBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt EVX2_MOUSE UniProtKB/Swiss-Prot
  G5E813 ENTREZGENE, UniProtKB/TrEMBL
  P49749 ENTREZGENE
  Q6P7W9_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Evx2  even-skipped homeobox 2    even skipped homeotic gene 2 homolog  Symbol and/or name change 5135510 APPROVED