Evx2 (even-skipped homeobox 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Evx2 (even-skipped homeobox 2) Chinchilla lanigera
Analyze
Symbol: Evx2
Name: even-skipped homeobox 2
RGD ID: 8800425
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN limb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); split hand-foot malformation 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox even-skipped homolog protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540320,578,813 - 20,582,409 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540320,578,813 - 20,582,409 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Evx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540320,578,813 - 20,582,409 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540320,578,813 - 20,582,409 (+)NCBIChiLan1.0ChiLan1.0
EVX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382176,077,472 - 176,083,962 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2176,077,472 - 176,083,962 (-)EnsemblGRCh38hg38GRCh38
GRCh372176,942,200 - 176,948,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,653,081 - 176,656,936 (-)NCBINCBI36Build 36hg18NCBI36
Celera2170,553,985 - 170,557,840 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2168,822,321 - 168,826,177 (-)NCBIHuRef
CHM1_12176,950,682 - 176,954,537 (-)NCBICHM1_1
T2T-CHM13v2.02176,565,581 - 176,572,075 (-)NCBIT2T-CHM13v2.0
Evx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,483,333 - 74,491,864 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,483,335 - 74,489,901 (-)EnsemblGRCm39 Ensembl
GRCm38274,652,989 - 74,661,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,652,991 - 74,659,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv37274,493,673 - 74,497,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,456,455 - 74,460,258 (-)NCBIMGSCv36mm8
Celera276,325,721 - 76,329,525 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
Evx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,965,630 - 79,969,700 (-)NCBIGRCr8
mRatBN7.2359,558,197 - 59,562,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,558,197 - 59,561,872 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0361,564,917 - 61,581,598 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,578,229 - 61,581,598 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0368,032,231 - 68,048,055 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,262,625 - 57,274,916 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1357,166,866 - 57,172,821 (-)NCBI
Celera359,080,928 - 59,084,154 (-)NCBICelera
Cytogenetic Map3q23NCBI
EVX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21378,745,037 - 78,752,561 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B78,760,013 - 78,767,481 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B63,359,892 - 63,364,762 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B181,069,133 - 181,073,347 (-)NCBIpanpan1.1PanPan1.1panPan2
EVX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,887,095 - 19,891,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3619,887,524 - 19,891,247 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,897,402 - 19,901,132 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03620,028,549 - 20,032,283 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3620,028,549 - 20,032,913 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13620,102,621 - 20,106,351 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03620,103,583 - 20,107,304 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03620,215,301 - 20,219,023 (-)NCBIUU_Cfam_GSD_1.0
Evx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303137,010,758 - 137,017,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365095,566,432 - 5,571,005 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365095,566,432 - 5,571,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EVX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,881,362 - 81,885,193 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,881,362 - 81,884,994 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,345,989 - 91,354,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EVX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11061,650,763 - 61,659,724 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1061,654,829 - 61,658,494 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040137,951,216 - 137,955,814 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Evx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,221,382 - 13,224,978 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,221,382 - 13,224,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000021203   ⟹   ENSCLAP00000021002
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540320,578,813 - 20,582,409 (+)Ensembl
RefSeq Acc Id: XM_005373888   ⟹   XP_005373945
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540320,578,813 - 20,582,409 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373945 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021002
  ENSCLAP00000021002.1
RefSeq Acc Id: XP_005373945   ⟸   XM_005373888
- UniProtKB: A0A8C2VUV4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021002   ⟸   ENSCLAT00000021203
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021203 ENTREZGENE
  ENSCLAT00000021203.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene Evx2 ENTREZGENE
PANTHER HOMEOBOX EVEN-SKIPPED HOMOLOG PROTEIN 2 UniProtKB/TrEMBL
  SEGMENTATION PROTEIN EVEN-SKIPPED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2VUV4 ENTREZGENE, UniProtKB/TrEMBL